CuGenDBv2

Gene ID	HG10018855
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Photosystem II protein D1
Genome location	Chr04:9747056..9747241
RNA-Seq Expression	HG10018855
Synteny	HG10018855
Gene Ontology terms	GO:0009635 - response to herbicide (biological process) GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0010242 - oxygen evolving activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000484 - Photosynthetic reaction centre, L/M IPR036854 - Photosystem II protein D1/D2 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AEX95796.1 photosystem II protein D1 [Ledebouria cordifolia]

2.2e-16

76.67

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Query:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN
        M FNLNGFNFNQS+   Q  VINTW D+INRANL MEVMHE NA+NFPL+L VVEVPSIN
Subjt:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN

KAF7048875.1 hypothetical protein CFC21_057534, partial [Triticum aestivum]

2.2e-16

76.67

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Query:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN
        M FNLNGFNFNQS+   Q  VINTW D+INRANL MEVMHE NA+NFPL+L VVEVPSIN
Subjt:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN

XP_038906467.1 photosystem II protein D1 [Benincasa hispida]

2.2e-16

76.67

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Query:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN
        M FNLNGFNFNQS+   Q  VINTW D+INRANL MEVMHE NA+NFPL+L VVEVPSIN
Subjt:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN

YP_009752646.1 photosystem II protein D1 [Ampelosycios humblotii]

2.2e-16

76.67

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Query:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN
        M FNLNGFNFNQS+   Q  VINTW D+INRANL MEVMHE NA+NFPL+L VVEVPSIN
Subjt:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN

YP_009990568.1 photosystem II protein D1 [Zygophyllum fabago]

2.2e-16

76.67

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Query:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN
        M FNLNGFNFNQS+   Q  VINTW D+INRANL MEVMHE NA+NFPL+L VVEVPSIN
Subjt:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN

TrEMBL top hits

e value

%identity

Alignment

A0A3B6IS79 Uncharacterized protein

1.1e-16

76.67

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Query:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN
        M FNLNGFNFNQS+   Q  VINTW D+INRANL MEVMHE NA+NFPL+L VVEVPSIN
Subjt:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN

A0A3B6KN25 Uncharacterized protein

1.1e-16

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Query:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN
        M FNLNGFNFNQS+   Q  VINTW D+INRANL MEVMHE+NA+NFPL+L  VEVPSIN
Subjt:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN

A0A3B6MI93 Photosystem II protein D1

1.1e-16

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Query:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN
        M FNLNGFNFNQS+   Q  VINTW D+INRANL MEVMHE+NA+NFPL+L  VEVPSIN
Subjt:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN

A0A6H0ETP7 Photosystem II protein D1

1.1e-16

76.67

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Query:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN
        M FNLNGFNFNQS+   Q  VINTW D+INRANL MEVMHE NA+NFPL+L VVEVPSIN
Subjt:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN

H2FAW3 Photosystem II protein D1

1.1e-16

76.67

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Query:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN
        M FNLNGFNFNQS+   Q  VINTW D+INRANL MEVMHE NA+NFPL+L VVEVPSIN
Subjt:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN

SwissProt top hits

e value

%identity

Alignment

A1E9Y8 Photosystem II protein D1

1.9e-18

73.33

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Query:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN
        M FNLNGFNFNQS+   Q  VINTW D+INRANL MEVMHE NA+NFPL+L  +EVPSIN
Subjt:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN

P05337 Photosystem II protein D1

1.9e-18

73.33

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Query:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN
        M FNLNGFNFNQS+   Q  VINTW D+INRANL MEVMHE NA+NFPL+L  VEVP+IN
Subjt:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN

P10510 Photosystem II protein D1

8.3e-19

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Query:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN
        M FNLNGFNFNQS+   Q  VINTW D+INRANL MEVMHE NA+NFPL+L  VEVPSIN
Subjt:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN

P12463 Photosystem II protein D1

8.3e-19

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Query:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN
        M FNLNGFNFNQS+   Q  VINTW D+INRANL MEVMHE NA+NFPL+L  VEVPSIN
Subjt:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN

Q2QDA8 Photosystem II protein D1

8.3e-19

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Query:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN
        M FNLNGFNFNQS+   Q  VINTW D+INRANL MEVMHE NA+NFPL+L  VEVPSIN
Subjt:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN

Arabidopsis top hits

e value

%identity

Alignment

ATCG00020.1 photosystem II reaction center protein A

6.6e-19

71.67

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Query:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN
        M FNLNGFNFNQS+   Q  VINTW D+INRANL MEVMHE NA+NFPL+L  VE PS N
Subjt:  MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSIN

Sequences

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CDS sequence

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ATGCCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTATAGGTTATAGGCAATGTTGTGTAATTAACACATGGGTTGATATGATTAATCGTGCTAATCTTAGTATGGA
AGTTATGCATGAATATAATGCTTACAACTTTCCTCTAGAACTAACTGTTGTTGAAGTTCCATCTATCAATGTATAA

mRNA sequence

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ATGCCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTATAGGTTATAGGCAATGTTGTGTAATTAACACATGGGTTGATATGATTAATCGTGCTAATCTTAGTATGGA
AGTTATGCATGAATATAATGCTTACAACTTTCCTCTAGAACTAACTGTTGTTGAAGTTCCATCTATCAATGTATAA

Protein sequence

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MPFNLNGFNFNQSIGYRQCCVINTWVDMINRANLSMEVMHEYNAYNFPLELTVVEVPSINV

HG10018855 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome