; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10018860 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018860
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCell surface glycoprotein 1
Genome locationChr04:9817239..9817700
RNA-Seq ExpressionHG10018860
SyntenyHG10018860
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GIL82429.1 hypothetical protein Vretifemale_11418, partial [Volvox reticuliferus]5.1e-0650.41Show/hide
Query:  SAAAPSPSPSPALSPTPPASPSPPWRWTPITKPP----------PPPTPSHETKPTPPPSSPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQSPSPSPLSV
        S A PSP P P LSP PP SPSPP   +P   PP          PPP PS  T P PPPS P P PSP P PP +    PTP P SPPPP  PSP P   
Subjt:  SAAAPSPSPSPALSPTPPASPSPPWRWTPITKPP----------PPPTPSHETKPTPPPSSPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQSPSPSPLSV

Query:  PSPSPSWIDGPPSEAPAPSKP
        PSP P     PP   P+P  P
Subjt:  PSPSPSWIDGPPSEAPAPSKP

KAF6254242.1 hypothetical protein COO60DRAFT_1462786 [Scenedesmus sp. NREL 46B-D3]1.4e-0654.95Show/hide
Query:  APSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPS-SPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQSPSPSPLSVPSPSPSWIDGPP
        +PSPSPSP+ SP+P  SPSP    +P   PPPPP+PS    P+P PS SP P+PSP+P PP +   +P P P SP PP SPSPSP   PSPSP     PP
Subjt:  APSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPS-SPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQSPSPSPLSVPSPSPSWIDGPP

Query:  SEAPAPSKPKS
        S +P+PS P S
Subjt:  SEAPAPSKPKS

XP_011659717.1 vegetative cell wall protein gp1 [Cucumis sativus]3.3e-2968.18Show/hide
Query:  MPHSALLNALLAAALLFSAAAPSPSPSPALSPTPPASPSPPWRWTPITKPP-PPPTPSHETKPTPPPSSPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQS
        MPHS LLNALLAAALLFSAAA SPSPSP  SPTPPAS SPPWRW PITKPP  PPTPSHET+P+ PP      PSPT VPP AHH  P            
Subjt:  MPHSALLNALLAAALLFSAAAPSPSPSPALSPTPPASPSPPWRWTPITKPP-PPPTPSHETKPTPPPSSPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQS

Query:  PSPSPLSVPSPSPSWIDGPPSEAPAPSKPKSDAFHNRFSVVGSVAIGAMAAALL
        P+  P S PSPSP+WI  PPSEA +PSK KSD F N FS+VGSVAIGAMAAA L
Subjt:  PSPSPLSVPSPSPSWIDGPPSEAPAPSKPKSDAFHNRFSVVGSVAIGAMAAALL

XP_022141995.1 extensin-like [Momordica charantia]2.4e-1961.59Show/hide
Query:  LAAALLFSAAAPSPSPSPALSPTPPASPSPPWRWTPITKPPPPPT---PSHETKPTPPPSSPAPAPSPTP--VPPLAHHHAPTPGPVSPPP-PQSPSP--
        +AAALL SAAA   +P PA SP+P A+PSPPWRWTP  KPP PPT   P+   +PT PPSSPAP+PSPT   VPP      PT  PVSPPP  QSP+P  
Subjt:  LAAALLFSAAAPSPSPSPALSPTPPASPSPPWRWTPITKPPPPPT---PSHETKPTPPPSSPAPAPSPTP--VPPLAHHHAPTPGPVSPPP-PQSPSP--

Query:  SPLSVPSPSPSWIDGPPSEAPAPSKPKSDAFHNRFSVVGSVAIGAMAAALL
        +P    +P+PSWI GPP++A APSK KS+A  NRFS+VGSV IGAMAAA L
Subjt:  SPLSVPSPSPSWIDGPPSEAPAPSKPKSDAFHNRFSVVGSVAIGAMAAALL

XP_038887113.1 anther-specific proline-rich protein APG-like [Benincasa hispida]3.4e-4279.87Show/hide
Query:  MPHSALLNALLAAALLFS-AAAPSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPSSPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQS
        MPHSALLNALLAAALLFS AAAP+P+PSPA   TPPASPSPPWRWTPITKPPP  TPSHE+KPTPPPSSP P PSPTPV P  HHHAPT  PVS P  +S
Subjt:  MPHSALLNALLAAALLFS-AAAPSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPSSPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQS

Query:  PSPSPLSVPSPSPSWIDGPPSEAPAPSKPKSDAFHNRFSVVGSVAIGAMAAALL
        PSPS    PSPSPSWI  PP EAPAPSK KSDAF+NRFSVV SVAI AMAAALL
Subjt:  PSPSPLSVPSPSPSWIDGPPSEAPAPSKPKSDAFHNRFSVVGSVAIGAMAAALL

TrEMBL top hitse value%identityAlignment
A0A093H3P1 Neurofilament heavy polypeptide (Fragment)8.0e-0551.75Show/hide
Query:  APSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPSSPAPAPSPTPVPPLAHHHAPTPGP-VSPPPPQSPSPSPLSVPSPSPSWIDGP-
        +P PSPSP  SP+PP SPSPP   +P   P PPP+PS    P+PPP SP+P PSP+P P  +   +P+P P +SPPP  SP PSP   PSPSP     P 
Subjt:  APSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPSSPAPAPSPTPVPPLAHHHAPTPGP-VSPPPPQSPSPSPLSVPSPSPSWIDGP-

Query:  --PSEAPAPSKPKS
          PS  P+PS P S
Subjt:  --PSEAPAPSKPKS

A0A0A0K238 Uncharacterized protein1.6e-2968.18Show/hide
Query:  MPHSALLNALLAAALLFSAAAPSPSPSPALSPTPPASPSPPWRWTPITKPP-PPPTPSHETKPTPPPSSPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQS
        MPHS LLNALLAAALLFSAAA SPSPSP  SPTPPAS SPPWRW PITKPP  PPTPSHET+P+ PP      PSPT VPP AHH  P            
Subjt:  MPHSALLNALLAAALLFSAAAPSPSPSPALSPTPPASPSPPWRWTPITKPP-PPPTPSHETKPTPPPSSPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQS

Query:  PSPSPLSVPSPSPSWIDGPPSEAPAPSKPKSDAFHNRFSVVGSVAIGAMAAALL
        P+  P S PSPSP+WI  PPSEA +PSK KSD F N FS+VGSVAIGAMAAA L
Subjt:  PSPSPLSVPSPSPSWIDGPPSEAPAPSKPKSDAFHNRFSVVGSVAIGAMAAALL

A0A2K3CSD7 Uncharacterized protein2.1e-0548.84Show/hide
Query:  MPHSALLNALLAAALLFSAAAPSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPS-SPAPAPSPTPVPPLAHHHAPTPGP-VSPPPPQ
        +PH      ++ AALL +AAAP+P+PSPA  P+P  SPSP  + +P   P P P+PS    P+P PS SP+P+PSP+P P  +   +P+P P  SP P  
Subjt:  MPHSALLNALLAAALLFSAAAPSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPS-SPAPAPSPTPVPPLAHHHAPTPGP-VSPPPPQ

Query:  SPSPSPLSVPSPSPSWIDGP-PSEAPAPS
        SPSPSP   PSPSPS    P PS +P+PS
Subjt:  SPSPSPLSVPSPSPSWIDGP-PSEAPAPS

A0A6J1CJN4 extensin-like1.2e-1961.59Show/hide
Query:  LAAALLFSAAAPSPSPSPALSPTPPASPSPPWRWTPITKPPPPPT---PSHETKPTPPPSSPAPAPSPTP--VPPLAHHHAPTPGPVSPPP-PQSPSP--
        +AAALL SAAA   +P PA SP+P A+PSPPWRWTP  KPP PPT   P+   +PT PPSSPAP+PSPT   VPP      PT  PVSPPP  QSP+P  
Subjt:  LAAALLFSAAAPSPSPSPALSPTPPASPSPPWRWTPITKPPPPPT---PSHETKPTPPPSSPAPAPSPTP--VPPLAHHHAPTPGPVSPPP-PQSPSP--

Query:  SPLSVPSPSPSWIDGPPSEAPAPSKPKSDAFHNRFSVVGSVAIGAMAAALL
        +P    +P+PSWI GPP++A APSK KS+A  NRFS+VGSV IGAMAAA L
Subjt:  SPLSVPSPSPSWIDGPPSEAPAPSKPKSDAFHNRFSVVGSVAIGAMAAALL

A0A7J7PQK5 Uncharacterized protein6.6e-0754.95Show/hide
Query:  APSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPS-SPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQSPSPSPLSVPSPSPSWIDGPP
        +PSPSPSP+ SP+P  SPSP    +P   PPPPP+PS    P+P PS SP P+PSP+P PP +   +P P P SP PP SPSPSP   PSPSP     PP
Subjt:  APSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPS-SPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQSPSPSPLSVPSPSPSWIDGPP

Query:  SEAPAPSKPKS
        S +P+PS P S
Subjt:  SEAPAPSKPKS

SwissProt top hitse value%identityAlignment
O10341 Uncharacterized 29.3 kDa protein5.3e-0650Show/hide
Query:  PSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPS---SPAPAPSPTPVPPLAHHHAPTPGPV-SPPPPQSPSPSPLSVPSPSPSWIDG
        PSP+P+PALSPTP  +PSP    TP   P P PTPS    PTP PS   SP P PSPTP P       PTP P  SP P  +P+PSP   P+P+PS    
Subjt:  PSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPS---SPAPAPSPTPVPPLAHHHAPTPGPV-SPPPPQSPSPSPLSVPSPSPSWIDG

Query:  P---PSEAPAPSKPKS
        P   PS  P+P+ P S
Subjt:  P---PSEAPAPSKPKS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCACTCTGCCCTTCTCAACGCCCTCTTGGCGGCGGCGCTGCTCTTCTCCGCCGCCGCCCCCTCTCCATCTCCGTCACCAGCCCTGTCCCCCACTCCCCCGGCCTC
CCCTTCCCCTCCCTGGAGATGGACCCCCATCACCAAGCCTCCTCCACCACCAACGCCGTCGCATGAAACCAAGCCCACTCCACCGCCGTCGTCTCCGGCACCAGCACCGT
CGCCTACTCCAGTTCCGCCGCTGGCTCATCACCATGCACCAACTCCGGGTCCAGTTTCCCCGCCGCCGCCGCAGAGCCCTTCTCCGTCCCCTCTGTCAGTACCATCTCCG
TCTCCGTCCTGGATCGACGGACCGCCGTCGGAAGCACCGGCGCCGTCAAAACCGAAGAGCGATGCCTTTCATAATAGATTCTCGGTGGTGGGATCGGTGGCTATTGGAGC
CATGGCTGCTGCTCTGCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCACTCTGCCCTTCTCAACGCCCTCTTGGCGGCGGCGCTGCTCTTCTCCGCCGCCGCCCCCTCTCCATCTCCGTCACCAGCCCTGTCCCCCACTCCCCCGGCCTC
CCCTTCCCCTCCCTGGAGATGGACCCCCATCACCAAGCCTCCTCCACCACCAACGCCGTCGCATGAAACCAAGCCCACTCCACCGCCGTCGTCTCCGGCACCAGCACCGT
CGCCTACTCCAGTTCCGCCGCTGGCTCATCACCATGCACCAACTCCGGGTCCAGTTTCCCCGCCGCCGCCGCAGAGCCCTTCTCCGTCCCCTCTGTCAGTACCATCTCCG
TCTCCGTCCTGGATCGACGGACCGCCGTCGGAAGCACCGGCGCCGTCAAAACCGAAGAGCGATGCCTTTCATAATAGATTCTCGGTGGTGGGATCGGTGGCTATTGGAGC
CATGGCTGCTGCTCTGCTTTAA
Protein sequenceShow/hide protein sequence
MPHSALLNALLAAALLFSAAAPSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPSSPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQSPSPSPLSVPSP
SPSWIDGPPSEAPAPSKPKSDAFHNRFSVVGSVAIGAMAAALL