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HG10018889 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018889
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNA-directed DNA polymerase (Reverse transcriptase)
Genome locationChr04:10546160..10546411
RNA-Seq ExpressionHG10018889
SyntenyHG10018889
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU40243.1 hypothetical protein TSUD_219530 [Trifolium subterraneum]8.7e-0843.84Show/hide
Query:  YENASGECINLSKSSMIFSPNVIMECGAYLSSMLGINKVEDFGFYLAIPSIFSRRKSRDFQYIVEKVWGTINN
        YENASG+ INLSKS + FS N+  E    L  ++G+  V   G YL +PS+  R K   F YI +++W  IN+
Subjt:  YENASGECINLSKSSMIFSPNVIMECGAYLSSMLGINKVEDFGFYLAIPSIFSRRKSRDFQYIVEKVWGTINN

GAU45877.1 hypothetical protein TSUD_401030, partial [Trifolium subterraneum]2.3e-0845.21Show/hide
Query:  YENASGECINLSKSSMIFSPNVIMECGAYLSSMLGINKVEDFGFYLAIPSIFSRRKSRDFQYIVEKVWGTINN
        YENASG+ INLSKS + FS N+  E    LS ++G+  V   G YL +PS+  R K   F YI +++W  IN+
Subjt:  YENASGECINLSKSSMIFSPNVIMECGAYLSSMLGINKVEDFGFYLAIPSIFSRRKSRDFQYIVEKVWGTINN

XP_021626927.1 uncharacterized protein LOC110625601 [Manihot esculenta]1.0e-0847.76Show/hide
Query:  YENASGECINLSKSSMIFSPNVIMECGAYLSSMLGINKVEDFGFYLAIPSIFSRRKSRDFQYIVEKV
        YE A G+ I+L+KSS++F+P V M+C   L ++LG+ +V++ G YL +PS+  R K + FQY+VEKV
Subjt:  YENASGECINLSKSSMIFSPNVIMECGAYLSSMLGINKVEDFGFYLAIPSIFSRRKSRDFQYIVEKV

XP_022143493.1 uncharacterized protein LOC111013370 [Momordica charantia]1.3e-0843.48Show/hide
Query:  MYENASGECINLSKSSMIFSPNVIMECGAYLSSMLGINKVEDFGFYLAIPSIFSRRKSRDFQYIVEKVW
        +Y   S +CIN +KS++IFSPNV +    +L S+L +  V DFG Y  +PS FSRRK +D++++ +++W
Subjt:  MYENASGECINLSKSSMIFSPNVIMECGAYLSSMLGINKVEDFGFYLAIPSIFSRRKSRDFQYIVEKVW

XP_030964852.1 uncharacterized protein LOC115986136 [Quercus lobata]1.1e-0744.93Show/hide
Query:  MYENASGECINLSKSSMIFSPNVIMECGAYLSSMLGINKVEDFGFYLAIPSIFSRRKSRDFQYIVEKVW
        +Y +ASG+CINL KSS  FS NV +E  A++   L +  VE F  YL +P++  RRK   F ++ E+VW
Subjt:  MYENASGECINLSKSSMIFSPNVIMECGAYLSSMLGINKVEDFGFYLAIPSIFSRRKSRDFQYIVEKVW

TrEMBL top hitse value%identityAlignment
A0A2N9H0F5 CCHC-type domain-containing protein7.2e-0850.79Show/hide
Query:  SGECINLSKSSMIFSPNVIMECGAYLSSMLGINKVEDFGFYLAIPSIFSRRKSRDFQYIVEKV
        SG+ +NLSKS ++FSPNV  +  A LS +LG++  +D G YL  P   + R SRDF +IVEKV
Subjt:  SGECINLSKSSMIFSPNVIMECGAYLSSMLGINKVEDFGFYLAIPSIFSRRKSRDFQYIVEKV

A0A2Z6N0X6 Uncharacterized protein7.2e-0843.84Show/hide
Query:  YENASGECINLSKSSMIFSPNVIMECGAYLSSMLGINKVEDFGFYLAIPSIFSRRKSRDFQYIVEKVWGTINN
        YE ASG+ INLSKS + FS N+  E    LS ++G+  V   G YL +PS+  R K   F YI +++W  IN+
Subjt:  YENASGECINLSKSSMIFSPNVIMECGAYLSSMLGINKVEDFGFYLAIPSIFSRRKSRDFQYIVEKVWGTINN

A0A2Z6NE64 Reverse transcriptase domain-containing protein4.2e-0843.84Show/hide
Query:  YENASGECINLSKSSMIFSPNVIMECGAYLSSMLGINKVEDFGFYLAIPSIFSRRKSRDFQYIVEKVWGTINN
        YENASG+ INLSKS + FS N+  E    L  ++G+  V   G YL +PS+  R K   F YI +++W  IN+
Subjt:  YENASGECINLSKSSMIFSPNVIMECGAYLSSMLGINKVEDFGFYLAIPSIFSRRKSRDFQYIVEKVWGTINN

A0A2Z6PL14 Reverse transcriptase domain-containing protein (Fragment)1.1e-0845.21Show/hide
Query:  YENASGECINLSKSSMIFSPNVIMECGAYLSSMLGINKVEDFGFYLAIPSIFSRRKSRDFQYIVEKVWGTINN
        YENASG+ INLSKS + FS N+  E    LS ++G+  V   G YL +PS+  R K   F YI +++W  IN+
Subjt:  YENASGECINLSKSSMIFSPNVIMECGAYLSSMLGINKVEDFGFYLAIPSIFSRRKSRDFQYIVEKVWGTINN

A0A6J1CQU9 uncharacterized protein LOC1110133706.5e-0943.48Show/hide
Query:  MYENASGECINLSKSSMIFSPNVIMECGAYLSSMLGINKVEDFGFYLAIPSIFSRRKSRDFQYIVEKVW
        +Y   S +CIN +KS++IFSPNV +    +L S+L +  V DFG Y  +PS FSRRK +D++++ +++W
Subjt:  MYENASGECINLSKSSMIFSPNVIMECGAYLSSMLGINKVEDFGFYLAIPSIFSRRKSRDFQYIVEKVW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGAAAATGCCTCGGGAGAATGTATTAATCTTTCAAAGTCATCAATGATTTTCTCACCAAATGTAATCATGGAGTGTGGAGCATACTTGAGTAGTATGCTGGGCAT
TAATAAGGTTGAAGACTTTGGATTTTATCTTGCAATTCCATCAATCTTCTCAAGAAGAAAATCTAGGGATTTCCAATATATTGTTGAGAAAGTATGGGGAACCATTAATA
ACCCAAATACTCTTGTGTCTTGTTTACTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTATGAAAATGCCTCGGGAGAATGTATTAATCTTTCAAAGTCATCAATGATTTTCTCACCAAATGTAATCATGGAGTGTGGAGCATACTTGAGTAGTATGCTGGGCAT
TAATAAGGTTGAAGACTTTGGATTTTATCTTGCAATTCCATCAATCTTCTCAAGAAGAAAATCTAGGGATTTCCAATATATTGTTGAGAAAGTATGGGGAACCATTAATA
ACCCAAATACTCTTGTGTCTTGTTTACTTTAA
Protein sequenceShow/hide protein sequence
MYENASGECINLSKSSMIFSPNVIMECGAYLSSMLGINKVEDFGFYLAIPSIFSRRKSRDFQYIVEKVWGTINNPNTLVSCLL