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HG10018893 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018893
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
Genome locationChr04:10684453..10686144
RNA-Seq ExpressionHG10018893
SyntenyHG10018893
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAE5963715.1 unnamed protein product [Arabidopsis arenosa]1.3e-0534.65Show/hide
Query:  LKLNIDASRVDPSSIVGLGYVIQNSKGEVLVVGAEFLESTCEVVDAEAMTLLVGLKIVGDMNIQNVWVESNSQILVKAIHDHSMIHSRIGVMLEEIREYV
        LK N D+      S    G+VI+NS G+VL+ G   L S+   + AEA+  L  L +     ++ +W ES+S+ L   I +    HS+IG +L++IR ++
Subjt:  LKLNIDASRVDPSSIVGLGYVIQNSKGEVLVVGAEFLESTCEVVDAEAMTLLVGLKIVGDMNIQNVWVESNSQILVKAIHDHSMIHSRIGVMLEEIREYV

Query:  A
        A
Subjt:  A

PRQ49904.1 putative ribonuclease H-like domain-containing protein [Rosa chinensis]5.8e-0635.29Show/hide
Query:  LKLNIDASRVDPSSIVGLGYVIQNSKGEVLVVGAEFLESTCEVVDAEAMTLLVGLKIVGDMNIQNVWVESNSQILVKAIHDHSMIHSRIGVMLEEIREYV
        +KLN+D +R + S  +G G VI++  G+ L  G        ++++AEA  LL GLK+  D+NI+ + VES+S I VK + D   I   +G ++   R  +
Subjt:  LKLNIDASRVDPSSIVGLGYVIQNSKGEVLVVGAEFLESTCEVVDAEAMTLLVGLKIVGDMNIQNVWVESNSQILVKAIHDHSMIHSRIGVMLEEIREYV

Query:  AG
         G
Subjt:  AG

XP_019190496.1 PREDICTED: uncharacterized protein LOC109184955 [Ipomoea nil]9.8e-0632.74Show/hide
Query:  LKLNIDASRVDPSSIVGLGYVIQNSKGEVLVVGAEFLESTCEVVDAEAMTLLVGLKIVGDMNIQNVWVESNSQILVKAIHDHSMIHSRIGVMLEEIREYV
        LKLN DA+  + SS +GLG+V++N +G  L      + S   V +AEA+++   L  +  + + NV VE +SQI+   +H  S   S  G+++++++E  
Subjt:  LKLNIDASRVDPSSIVGLGYVIQNSKGEVLVVGAEFLESTCEVVDAEAMTLLVGLKIVGDMNIQNVWVESNSQILVKAIHDHSMIHSRIGVMLEEIREYV

Query:  AGVG-----HRRW
        A +G     + RW
Subjt:  AGVG-----HRRW

XP_042965938.1 uncharacterized protein LOC122299618 [Carya illinoinensis]1.5e-0631.48Show/hide
Query:  LKLNIDASRVDPSSIVGLGYVIQNSKGEVLVVGAEFLESTCEVVDAEAMTLLVGLKIVGDMNIQNVWVESNSQILVKAIHDHSMIHSRIGVMLEEIREYV
        +K N DA+       VG+G VI++ +GEVLV   E +    +   AE+  L   L++  D+N  NVW E ++Q +V A++  +   SR G ++E+++  +
Subjt:  LKLNIDASRVDPSSIVGLGYVIQNSKGEVLVVGAEFLESTCEVVDAEAMTLLVGLKIVGDMNIQNVWVESNSQILVKAIHDHSMIHSRIGVMLEEIREYV

Query:  AGVGHRRW
           G ++W
Subjt:  AGVGHRRW

XP_042974660.1 uncharacterized protein LOC122306292 [Carya illinoinensis]1.8e-0733.01Show/hide
Query:  KLNIDASRVDPSSIVGLGYVIQNSKGEVLVVGAEFLESTCEVVDAEAMTLLVGLKIVGDMNIQNVWVESNSQILVKAIHDHSMIHSRIGVMLEEIREYVA
        KLN+D +     S+ G+G +++NSKGEV++  A+   S    V+ EA+ ++ GL++  D+ IQN+ +ES+S ++VK  +      +  G ++ E +E V 
Subjt:  KLNIDASRVDPSSIVGLGYVIQNSKGEVLVVGAEFLESTCEVVDAEAMTLLVGLKIVGDMNIQNVWVESNSQILVKAIHDHSMIHSRIGVMLEEIREYVA

Query:  GVG
          G
Subjt:  GVG

TrEMBL top hitse value%identityAlignment
A0A2I4FCK8 uncharacterized protein LOC1089975201.8e-0528.97Show/hide
Query:  KLNIDASRVDPSSIVGLGYVIQNSKGEVLVVGAEFLESTCEVVDAEAMTLLVGLKIVGDMNIQNVWVESNSQILVKAIHDHSMIHSRIGVMLEEIREYVA
        KLN DA+      ++G+G V++NS+GEVLVV +      C    A+   LL  +K+  ++ +  V  E +++ +V +++ ++  HS  G+++++I+  + 
Subjt:  KLNIDASRVDPSSIVGLGYVIQNSKGEVLVVGAEFLESTCEVVDAEAMTLLVGLKIVGDMNIQNVWVESNSQILVKAIHDHSMIHSRIGVMLEEIREYVA

Query:  GVGHRRW
          GH  W
Subjt:  GVGHRRW

A0A2P6RTZ7 Putative ribonuclease H-like domain-containing protein2.8e-0635.29Show/hide
Query:  LKLNIDASRVDPSSIVGLGYVIQNSKGEVLVVGAEFLESTCEVVDAEAMTLLVGLKIVGDMNIQNVWVESNSQILVKAIHDHSMIHSRIGVMLEEIREYV
        +KLN+D +R + S  +G G VI++  G+ L  G        ++++AEA  LL GLK+  D+NI+ + VES+S I VK + D   I   +G ++   R  +
Subjt:  LKLNIDASRVDPSSIVGLGYVIQNSKGEVLVVGAEFLESTCEVVDAEAMTLLVGLKIVGDMNIQNVWVESNSQILVKAIHDHSMIHSRIGVMLEEIREYV

Query:  AG
         G
Subjt:  AG

A0A5E4ET70 PREDICTED: reverse mRNAase3.1e-0533.67Show/hide
Query:  KLKLNIDASRVDPSSIVGLGYVIQNSKGEVLVVGAEFLESTCEVVDAEAMTLLVGLKIVGDMNIQNVWVESNSQILVKAIHDHSMIHSRIGVMLEEIR
        K KLN+DA+ +    + G+G VI+N KGEV+V  A  L +      AE M L  GL    D    ++ VES+SQ +V  ++      +  G ++++I+
Subjt:  KLKLNIDASRVDPSSIVGLGYVIQNSKGEVLVVGAEFLESTCEVVDAEAMTLLVGLKIVGDMNIQNVWVESNSQILVKAIHDHSMIHSRIGVMLEEIR

A0A803QGE0 Uncharacterized protein1.4e-0531.13Show/hide
Query:  KLKLNIDASRVDPSSIVGLGYVIQNSKGEVLVVGAEFLESTCEVVDAEAMTLLVGLKIVGDMNIQNVWVESNSQILVKAIHDHSMIHSRIGVMLEEIREY
        ++KLN+DA+  D SS  G+G+V++NS  E+L V   +     +   AEAM +   L  + D +     VES+S I V+AIH   +++S  G+++++ +  
Subjt:  KLKLNIDASRVDPSSIVGLGYVIQNSKGEVLVVGAEFLESTCEVVDAEAMTLLVGLKIVGDMNIQNVWVESNSQILVKAIHDHSMIHSRIGVMLEEIREY

Query:  VAGVGH
        +  + +
Subjt:  VAGVGH

M5X848 Uncharacterized protein2.4e-0532.65Show/hide
Query:  KLKLNIDASRVDPSSIVGLGYVIQNSKGEVLVVGAEFLESTCEVVDAEAMTLLVGLKIVGDMNIQNVWVESNSQILVKAIHDHSMIHSRIGVMLEEIR
        K KLN+DA+ +  + + G+G VI+N KGEV+V  A  L +      AE M L  GL    D    ++ VES+SQ +V  ++      +  G ++++++
Subjt:  KLKLNIDASRVDPSSIVGLGYVIQNSKGEVLVVGAEFLESTCEVVDAEAMTLLVGLKIVGDMNIQNVWVESNSQILVKAIHDHSMIHSRIGVMLEEIR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein7.5e-0429.63Show/hide
Query:  LKLNIDASRVDPSSIVGLGYVIQNSKGEVLVVGAEFLESTCEVVDAEAMTLLVGLKIVGDMNIQNVWVESNSQILVKAIHD
        +K N DA+    +   G+G+V++N KGEV  +GA  L     V++AE   +   +  +       V  ES+SQ+L++ +++
Subjt:  LKLNIDASRVDPSSIVGLGYVIQNSKGEVLVVGAEFLESTCEVVDAEAMTLLVGLKIVGDMNIQNVWVESNSQILVKAIHD

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.0e-0526.73Show/hide
Query:  KLKLNIDASRVDPSSIVGLGYVIQNSKGEVLVVGAEFLESTCEVVDAEAMTLLVGLKIVGDMNIQNVWVESNSQILVKAIHDHSMIHSRIGVMLEEIREY
        KLK N DAS  + +++ GLG++++NS+G V+  G    +      +AE  TL+  ++       + V  E ++Q + + I+  S  + R+   L+ I+ +
Subjt:  KLKLNIDASRVDPSSIVGLGYVIQNSKGEVLVVGAEFLESTCEVVDAEAMTLLVGLKIVGDMNIQNVWVESNSQILVKAIHDHSMIHSRIGVMLEEIREY

Query:  V
        +
Subjt:  V


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTTAAAACTAAACATTGATGCTTCGCGTGTTGATCCATCAAGCATCGTGGGTCTGGGATATGTCATTCAAAATTCCAAAGGAGAGGTGTTGGTGGTTGGGGCCGA
GTTTTTGGAAAGCACATGTGAGGTTGTGGATGCTGAAGCAATGACCCTTCTTGTTGGGCTCAAGATTGTGGGTGATATGAACATTCAAAATGTTTGGGTCGAATCTAATT
CTCAAATCCTGGTTAAAGCTATCCACGATCATTCTATGATACATTCCCGAATTGGGGTTATGTTGGAAGAGATTAGAGAGTATGTTGCTGGAGTTGGCCACAGGCGATGG
TTGTCGAAGGTGGTCATCGGAGTTGGTTGTCAGAAGTGGTCTCCGGAGTTGGATGTCGGAGGTGGTCGCCTGAGTTTGGTCGTCAAATGTGGTGTCGGAGTTAGCCGTAG
AAGGTTTCATCGAAGTTGGTCGTTAGAGGTGGTCACCGAAGTTGAGCAACGAGACATCTGTGGTGATGAGGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGTTAAAACTAAACATTGATGCTTCGCGTGTTGATCCATCAAGCATCGTGGGTCTGGGATATGTCATTCAAAATTCCAAAGGAGAGGTGTTGGTGGTTGGGGCCGA
GTTTTTGGAAAGCACATGTGAGGTTGTGGATGCTGAAGCAATGACCCTTCTTGTTGGGCTCAAGATTGTGGGTGATATGAACATTCAAAATGTTTGGGTCGAATCTAATT
CTCAAATCCTGGTTAAAGCTATCCACGATCATTCTATGATACATTCCCGAATTGGGGTTATGTTGGAAGAGATTAGAGAGTATGTTGCTGGAGTTGGCCACAGGCGATGG
TTGTCGAAGGTGGTCATCGGAGTTGGTTGTCAGAAGTGGTCTCCGGAGTTGGATGTCGGAGGTGGTCGCCTGAGTTTGGTCGTCAAATGTGGTGTCGGAGTTAGCCGTAG
AAGGTTTCATCGAAGTTGGTCGTTAGAGGTGGTCACCGAAGTTGAGCAACGAGACATCTGTGGTGATGAGGGTTGA
Protein sequenceShow/hide protein sequence
MKLKLNIDASRVDPSSIVGLGYVIQNSKGEVLVVGAEFLESTCEVVDAEAMTLLVGLKIVGDMNIQNVWVESNSQILVKAIHDHSMIHSRIGVMLEEIREYVAGVGHRRW
LSKVVIGVGCQKWSPELDVGGGRLSLVVKCGVGVSRRRFHRSWSLEVVTEVEQRDICGDEG