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HG10018907 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018907
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCCHC-type domain-containing protein
Genome locationChr04:11078696..11079556
RNA-Seq ExpressionHG10018907
SyntenyHG10018907
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5469007.1 hypothetical protein F2P56_013112 [Juglans regia]7.1e-1731.38Show/hide
Query:  MGMFLEVDCDQDNFCWGESLRLKVDVDISKPLRRGIWIQPGEDQENIWIQVKYERVPDFCYGCGRIGHVVKDCKLEFQDKKLDPEFWQYGSWLKFQGSNP
        +G FLEVD  +  F WGE +R++V +DIS PL+R   ++ G D+   W+++ YER+PDFCY CG +GH +++C  EF     + +   YG+WL+   S+P
Subjt:  MGMFLEVDCDQDNFCWGESLRLKVDVDISKPLRRGIWIQPGEDQENIWIQVKYERVPDFCYGCGRIGHVVKDCKLEFQDKKLDPEFWQYGSWLKFQGSNP

Query:  GRRRKNTSPRNGKEGSPSEFFPPQPETNLNGKSPCKGKS------------FYNLGTMEDKNSPVSISNFDLNIGPVDLEIVENTEI-----QKDSNMEF
         R  +  +    KEGS +   PPQP        P KG S              NL   E  +    ++  + N+GPV +E + + +      + ++ M+ 
Subjt:  GRRRKNTSPRNGKEGSPSEFFPPQPETNLNGKSPCKGKS------------FYNLGTMEDKNSPVSISNFDLNIGPVDLEIVENTEI-----QKDSNMEF

Query:  GIQGQGLTLNSLDLLNPQTIPSLSD----QLDLSKSSEL
        G  G G T NS + +     P++++     + + KSSE+
Subjt:  GIQGQGLTLNSLDLLNPQTIPSLSD----QLDLSKSSEL

TXG70052.1 hypothetical protein EZV62_004987 [Acer yangbiense]5.4e-1747.73Show/hide
Query:  CWGESLRLKVDVDISKPLRRGIWIQPGEDQENIWIQVKYERVPDFCYGCGRIGHVVKDCKLEFQDK-KLDPEFWQYGSWLKFQGSNPG
        CWG+ +R+KV +DISKPL+R + ++ G+  E + + +KYER+PDFC+ CGRIGH++K+C  E   K  L+    ++G WLK QGS  G
Subjt:  CWGESLRLKVDVDISKPLRRGIWIQPGEDQENIWIQVKYERVPDFCYGCGRIGHVVKDCKLEFQDK-KLDPEFWQYGSWLKFQGSNPG

TXG73549.1 hypothetical protein EZV62_002128 [Acer yangbiense]4.2e-1742.59Show/hide
Query:  MGMFLEVDCDQDNFCWGESLRLKVDVDISKPLRRGIWIQPGEDQENIWIQVKYERVPDFCYGCGRIGHVVKDCKLEF-QDKKLDPEFWQYGSWLKFQGSN
        +G  +E+   +   CWG+ +R+KV +DI KPL+R +  +PG   E I + +KYER+PDFC+ CGRIGH +K+C  E  + + LD    +YGSWLK     
Subjt:  MGMFLEVDCDQDNFCWGESLRLKVDVDISKPLRRGIWIQPGEDQENIWIQVKYERVPDFCYGCGRIGHVVKDCKLEF-QDKKLDPEFWQYGSWLKFQGSN

Query:  PGRRRKNT
         G+ R N+
Subjt:  PGRRRKNT

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]8.4e-1844Show/hide
Query:  MGMFLEVDCDQDNFCWGESLRLKVDVDISKPLRRGIWIQPGEDQENIWIQVKYERVPDFCYGCGRIGHVVKDCK---LEFQDKKLDPEFWQYGSWLKFQG
        +G+F +V+ + +NFCWG  LR++V  D+ KPL RGI +         WI ++YER+PDF Y CGR+ H++KDC    ++   K L     QYG WL+FQG
Subjt:  MGMFLEVDCDQDNFCWGESLRLKVDVDISKPLRRGIWIQPGEDQENIWIQVKYERVPDFCYGCGRIGHVVKDCK---LEFQDKKLDPEFWQYGSWLKFQG

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.2e-1945.9Show/hide
Query:  MGMFLEVDCDQDNFCWGESLRLKVDVDISKPLRRGIWIQPGEDQENIWIQVKYERVPDFCYGCGRIGHVVKDCKLEFQDKKLDPEFW-QYGSWLKFQGSN
        +G F++VDC++  F WG SLR++V +DI+KPLRRGI I         WI ++YER+PDFCY CG IGH   DC   +   + D     +YG WL+F GS 
Subjt:  MGMFLEVDCDQDNFCWGESLRLKVDVDISKPLRRGIWIQPGEDQENIWIQVKYERVPDFCYGCGRIGHVVKDCKLEFQDKKLDPEFW-QYGSWLKFQGSN

Query:  PG--RRRKNTSP-RNGKEGSPS
         G  + RK  SP R    GS S
Subjt:  PG--RRRKNTSP-RNGKEGSPS

TrEMBL top hitse value%identityAlignment
A0A2N9E949 CCHC-type domain-containing protein6.9e-1840.95Show/hide
Query:  MGMFLEVDCDQDNFCWGESLRLKVDVDISKPLRRGIWIQPGEDQENIWIQVKYERVPDFCYGCGRIGHVVKDCKLEFQ-DKKLDPEFWQYGSWLKFQGSN
        +G+  E+D  +D   WGE +R++V +D+S PL R   ++ G+ +E+IW+ +KYE++P FCY CG +GH  ++C+L  Q +K  D   ++YGSWL+   + 
Subjt:  MGMFLEVDCDQDNFCWGESLRLKVDVDISKPLRRGIWIQPGEDQENIWIQVKYERVPDFCYGCGRIGHVVKDCKLEFQ-DKKLDPEFWQYGSWLKFQGSN

Query:  PGRRR
        PGRR+
Subjt:  PGRRR

A0A2N9G3M9 CCHC-type domain-containing protein6.9e-1840.95Show/hide
Query:  MGMFLEVDCDQDNFCWGESLRLKVDVDISKPLRRGIWIQPGEDQENIWIQVKYERVPDFCYGCGRIGHVVKDCKLEFQ-DKKLDPEFWQYGSWLKFQGSN
        +G+  E+D  +D   WGE +R++V +D+S PL R   ++ G+ +E+IW+ +KYE++P FCY CG +GH  ++C+L  Q +K  D   ++YGSWL+   + 
Subjt:  MGMFLEVDCDQDNFCWGESLRLKVDVDISKPLRRGIWIQPGEDQENIWIQVKYERVPDFCYGCGRIGHVVKDCKLEFQ-DKKLDPEFWQYGSWLKFQGSN

Query:  PGRRR
        PGRR+
Subjt:  PGRRR

A0A6J1BSZ1 uncharacterized protein LOC1110054814.1e-1844Show/hide
Query:  MGMFLEVDCDQDNFCWGESLRLKVDVDISKPLRRGIWIQPGEDQENIWIQVKYERVPDFCYGCGRIGHVVKDCK---LEFQDKKLDPEFWQYGSWLKFQG
        +G+F +V+ + +NFCWG  LR++V  D+ KPL RGI +         WI ++YER+PDF Y CGR+ H++KDC    ++   K L     QYG WL+FQG
Subjt:  MGMFLEVDCDQDNFCWGESLRLKVDVDISKPLRRGIWIQPGEDQENIWIQVKYERVPDFCYGCGRIGHVVKDCK---LEFQDKKLDPEFWQYGSWLKFQG

A0A6J1DU55 uncharacterized protein LOC1110231355.7e-2045.9Show/hide
Query:  MGMFLEVDCDQDNFCWGESLRLKVDVDISKPLRRGIWIQPGEDQENIWIQVKYERVPDFCYGCGRIGHVVKDCKLEFQDKKLDPEFW-QYGSWLKFQGSN
        +G F++VDC++  F WG SLR++V +DI+KPLRRGI I         WI ++YER+PDFCY CG IGH   DC   +   + D     +YG WL+F GS 
Subjt:  MGMFLEVDCDQDNFCWGESLRLKVDVDISKPLRRGIWIQPGEDQENIWIQVKYERVPDFCYGCGRIGHVVKDCKLEFQDKKLDPEFW-QYGSWLKFQGSN

Query:  PG--RRRKNTSP-RNGKEGSPS
         G  + RK  SP R    GS S
Subjt:  PG--RRRKNTSP-RNGKEGSPS

A0A803NE34 Uncharacterized protein5.3e-1850Show/hide
Query:  MGMFLEVDCDQDNFCWGESLRLKVDVDISKPLRRGIWIQPGEDQENIWIQVKYERVPDFCYGCGRIGHVVKDCKLE-FQDKKLDPEFWQYGSWL
        +G FLE D D D   WGE +R+K+  DI+KPLRRGI I  G   E  WI  KYER+ DFCY CGR+GH  +DC ++  +D+      +QYG WL
Subjt:  MGMFLEVDCDQDNFCWGESLRLKVDVDISKPLRRGIWIQPGEDQENIWIQVKYERVPDFCYGCGRIGHVVKDCKLE-FQDKKLDPEFWQYGSWL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAATGTTTCTTGAAGTAGATTGTGACCAAGACAATTTCTGTTGGGGAGAAAGCCTTCGTTTAAAAGTTGATGTGGACATTTCAAAACCTCTAAGAAGGGGTATTTG
GATTCAACCAGGGGAAGACCAAGAAAACATTTGGATTCAAGTTAAATATGAGAGGGTTCCTGACTTCTGTTATGGCTGTGGAAGAATTGGACATGTGGTCAAAGATTGCA
AATTAGAGTTTCAAGATAAGAAGTTAGATCCTGAGTTTTGGCAGTATGGGAGTTGGTTGAAATTTCAAGGAAGTAATCCAGGGAGAAGGAGGAAAAACACATCTCCAAGA
AATGGAAAAGAAGGCTCTCCCTCGGAATTTTTCCCTCCACAACCTGAAACAAATTTAAATGGTAAGAGTCCCTGTAAAGGGAAGTCTTTTTACAATTTGGGAACTATGGA
AGACAAAAACTCCCCTGTCTCAATCTCTAATTTCGATCTGAACATTGGCCCAGTGGATTTGGAAATTGTAGAAAACACTGAGATACAAAAAGATTCTAATATGGAGTTTG
GTATCCAAGGCCAAGGTTTGACTTTAAATTCTCTTGACCTTTTAAATCCTCAGACTATTCCTTCTCTCAGTGATCAATTGGATTTGTCTAAATCATCAGAACTCAAACAA
AGAACCTGGAAAAGGAGAGTTTTTTCTGAAAACAGAGATCCATCTCAATTGAAGGATACCCAAACTGCTTCAAAAAGGAAAGACAATCCTATTAGTAGTTTAGCTGGAAC
CAAGAAACCAAAAAGATCAGTTTCATCGTTAATCAATAACATCAGAGAAAAAGTGGCGGAGTTGTCAAGGCAACTCTGCCAAGAGCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAATGTTTCTTGAAGTAGATTGTGACCAAGACAATTTCTGTTGGGGAGAAAGCCTTCGTTTAAAAGTTGATGTGGACATTTCAAAACCTCTAAGAAGGGGTATTTG
GATTCAACCAGGGGAAGACCAAGAAAACATTTGGATTCAAGTTAAATATGAGAGGGTTCCTGACTTCTGTTATGGCTGTGGAAGAATTGGACATGTGGTCAAAGATTGCA
AATTAGAGTTTCAAGATAAGAAGTTAGATCCTGAGTTTTGGCAGTATGGGAGTTGGTTGAAATTTCAAGGAAGTAATCCAGGGAGAAGGAGGAAAAACACATCTCCAAGA
AATGGAAAAGAAGGCTCTCCCTCGGAATTTTTCCCTCCACAACCTGAAACAAATTTAAATGGTAAGAGTCCCTGTAAAGGGAAGTCTTTTTACAATTTGGGAACTATGGA
AGACAAAAACTCCCCTGTCTCAATCTCTAATTTCGATCTGAACATTGGCCCAGTGGATTTGGAAATTGTAGAAAACACTGAGATACAAAAAGATTCTAATATGGAGTTTG
GTATCCAAGGCCAAGGTTTGACTTTAAATTCTCTTGACCTTTTAAATCCTCAGACTATTCCTTCTCTCAGTGATCAATTGGATTTGTCTAAATCATCAGAACTCAAACAA
AGAACCTGGAAAAGGAGAGTTTTTTCTGAAAACAGAGATCCATCTCAATTGAAGGATACCCAAACTGCTTCAAAAAGGAAAGACAATCCTATTAGTAGTTTAGCTGGAAC
CAAGAAACCAAAAAGATCAGTTTCATCGTTAATCAATAACATCAGAGAAAAAGTGGCGGAGTTGTCAAGGCAACTCTGCCAAGAGCCATGA
Protein sequenceShow/hide protein sequence
MGMFLEVDCDQDNFCWGESLRLKVDVDISKPLRRGIWIQPGEDQENIWIQVKYERVPDFCYGCGRIGHVVKDCKLEFQDKKLDPEFWQYGSWLKFQGSNPGRRRKNTSPR
NGKEGSPSEFFPPQPETNLNGKSPCKGKSFYNLGTMEDKNSPVSISNFDLNIGPVDLEIVENTEIQKDSNMEFGIQGQGLTLNSLDLLNPQTIPSLSDQLDLSKSSELKQ
RTWKRRVFSENRDPSQLKDTQTASKRKDNPISSLAGTKKPKRSVSSLINNIREKVAELSRQLCQEP