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HG10018924 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018924
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTy1-copia retrotransposon protein
Genome locationChr04:11539552..11542047
RNA-Seq ExpressionHG10018924
SyntenyHG10018924
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042223.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]6.2e-1072.34Show/hide
Query:  QTSLVVLPNLSKLKPLDGANYHRWSQKVLIFFEQLEVDYVLTMKFQT
        +TS  +LP+LSKL+PLDG NY RWSQK+LIFFEQLEVDYVLT    T
Subjt:  QTSLVVLPNLSKLKPLDGANYHRWSQKVLIFFEQLEVDYVLTMKFQT
KAA0056761.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.1e-0972.34Show/hide
Query:  QTSLVVLPNLSKLKPLDGANYHRWSQKVLIFFEQLEVDYVLTMKFQT
        +TS  +LP+LSKL+PLDG NY RWSQK+LIFFEQLEVDYVLT    T
Subjt:  QTSLVVLPNLSKLKPLDGANYHRWSQKVLIFFEQLEVDYVLTMKFQT
KAA0063848.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]8.2e-1076.19Show/hide
Query:  QTSLVVLPNLSKLKPLDGANYHRWSQKVLIFFEQLEVDYVLT
        +TS  +LP+LSKL+PLDG NYHRWSQK+LIFFEQLEVDY+L+
Subjt:  QTSLVVLPNLSKLKPLDGANYHRWSQKVLIFFEQLEVDYVLT
TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.1e-0972.34Show/hide
Query:  QTSLVVLPNLSKLKPLDGANYHRWSQKVLIFFEQLEVDYVLTMKFQT
        +TS  +LP+LSKL+PLDG NY RWSQK+LIFFEQLEVDYVLT    T
Subjt:  QTSLVVLPNLSKLKPLDGANYHRWSQKVLIFFEQLEVDYVLTMKFQT
TYK26791.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]6.2e-1072.34Show/hide
Query:  QTSLVVLPNLSKLKPLDGANYHRWSQKVLIFFEQLEVDYVLTMKFQT
        +TS  +LP+LSKL+PLDG NY RWSQK+LIFFEQLEVDYVLT    T
Subjt:  QTSLVVLPNLSKLKPLDGANYHRWSQKVLIFFEQLEVDYVLTMKFQT
TrEMBL top hitse value%identityAlignment
A0A5A7SKK3 Ty1-copia retrotransposon protein5.2e-1072.34Show/hide
Query:  QTSLVVLPNLSKLKPLDGANYHRWSQKVLIFFEQLEVDYVLTMKFQT
        +TS  +LP+LSKL+PLDG NY RWSQK+LIFFEQLEVDYVLT    T
Subjt:  QTSLVVLPNLSKLKPLDGANYHRWSQKVLIFFEQLEVDYVLTMKFQT
A0A5A7TG73 Ty1-copia retrotransposon protein3.0e-1072.34Show/hide
Query:  QTSLVVLPNLSKLKPLDGANYHRWSQKVLIFFEQLEVDYVLTMKFQT
        +TS  +LP+LSKL+PLDG NY RWSQK+LIFFEQLEVDYVLT    T
Subjt:  QTSLVVLPNLSKLKPLDGANYHRWSQKVLIFFEQLEVDYVLTMKFQT
A0A5A7VIG3 Ty1-copia retrotransposon protein5.2e-1072.34Show/hide
Query:  QTSLVVLPNLSKLKPLDGANYHRWSQKVLIFFEQLEVDYVLTMKFQT
        +TS  +LP+LSKL+PLDG NY RWSQK+LIFFEQLEVDYVLT    T
Subjt:  QTSLVVLPNLSKLKPLDGANYHRWSQKVLIFFEQLEVDYVLTMKFQT
A0A5D3DSQ3 Ty1-copia retrotransposon protein3.0e-1072.34Show/hide
Query:  QTSLVVLPNLSKLKPLDGANYHRWSQKVLIFFEQLEVDYVLTMKFQT
        +TS  +LP+LSKL+PLDG NY RWSQK+LIFFEQLEVDYVLT    T
Subjt:  QTSLVVLPNLSKLKPLDGANYHRWSQKVLIFFEQLEVDYVLTMKFQT
A0A5D3DXF0 Ty1-copia retrotransposon protein3.9e-1076.19Show/hide
Query:  QTSLVVLPNLSKLKPLDGANYHRWSQKVLIFFEQLEVDYVLT
        +TS  +LP+LSKL+PLDG NYHRWSQK+LIFFEQLEVDY+L+
Subjt:  QTSLVVLPNLSKLKPLDGANYHRWSQKVLIFFEQLEVDYVLT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGATTCGAAGACCAAGGACAAGAACGTCAATCACAAAGAAAAAAAGATTGAGAAGAACCAAACGAGCCTGGTCGTTCTTCCGAATCTATCCAAATTGAAGCCACT
CGATGGAGCTAACTACCACCGTTGGTCCCAGAAAGTGTTGATCTTCTTCGAGCAATTGGAGGTAGATTACGTTCTGACCATGAAGTTCCAAACCTGCTTCTATTGTCGTT
GA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGATTCGAAGACCAAGGACAAGAACGTCAATCACAAAGAAAAAAAGATTGAGAAGAACCAAACGAGCCTGGTCGTTCTTCCGAATCTATCCAAATTGAAGCCACT
CGATGGAGCTAACTACCACCGTTGGTCCCAGAAAGTGTTGATCTTCTTCGAGCAATTGGAGGTAGATTACGTTCTGACCATGAAGTTCCAAACCTGCTTCTATTGTCGTT
GA
Protein sequenceShow/hide protein sequence
MVDSKTKDKNVNHKEKKIEKNQTSLVVLPNLSKLKPLDGANYHRWSQKVLIFFEQLEVDYVLTMKFQTCFYCR