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HG10018933 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018933
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
Genome locationChr04:11734505..11735132
RNA-Seq ExpressionHG10018933
SyntenyHG10018933
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4354438.1 hypothetical protein G4B88_010062 [Cannabis sativa]7.4e-0424.84Show/hide
Query:  LRSDEFLLFGVICWVIWEDKNKILFGSVVASVSINVEWILGYGDDILGFIIEARR------------------FIGRSDSSLGGSKRSLVEVSHPERFGI
        L  ++F+ F    W+IW+ +N+ +F +    +   + W +   +++LG   E R                   FI  SD+SL   +            G 
Subjt:  LRSDEFLLFGVICWVIWEDKNKILFGSVVASVSINVEWILGYGDDILGFIIEARR------------------FIGRSDSSLGGSKRSLVEVSHPERFGI

Query:  GLSAVIQNHLGVVVVAMQMEFQQGCVEAEAGQALVLLSGLRIAEEMGLSSLWVKVDALVMV
        G+SA+I+N  G ++VA  + +  GC+     +A  +L GL++A +  +S++WV  D+  M+
Subjt:  GLSAVIQNHLGVVVVAMQMEFQQGCVEAEAGQALVLLSGLRIAEEMGLSSLWVKVDALVMV

KAF4367776.1 hypothetical protein G4B88_011077 [Cannabis sativa]7.4e-0424.84Show/hide
Query:  LRSDEFLLFGVICWVIWEDKNKILFGSVVASVSINVEWILGYGDDILGFIIEARR------------------FIGRSDSSLGGSKRSLVEVSHPERFGI
        L  ++F+ F    W+IW+ +N+ +F +    +   + W +   +++LG   E R                   FI  SD+SL   +            G 
Subjt:  LRSDEFLLFGVICWVIWEDKNKILFGSVVASVSINVEWILGYGDDILGFIIEARR------------------FIGRSDSSLGGSKRSLVEVSHPERFGI

Query:  GLSAVIQNHLGVVVVAMQMEFQQGCVEAEAGQALVLLSGLRIAEEMGLSSLWVKVDALVMV
        G+SA+I+N  G ++VA  + +  GC+     +A  +L GL++A +  +S++WV  D+  M+
Subjt:  GLSAVIQNHLGVVVVAMQMEFQQGCVEAEAGQALVLLSGLRIAEEMGLSSLWVKVDALVMV

KAF4394884.1 hypothetical protein G4B88_002761 [Cannabis sativa]4.4e-0428Show/hide
Query:  LRSDEFLLFGVICWVIWEDKNKILFGSVVASVSINVEWILGYGDDILGFIIEAR-RFIGRSDSSLGGSKRSLVEVS------HPERFGIGLSAVIQNHLG
        L  +EF  F    W+IW+ +N  +F   V+     + W L   +  LG   +        + ++     + LV ++      H +  G GLSAVI++  G
Subjt:  LRSDEFLLFGVICWVIWEDKNKILFGSVVASVSINVEWILGYGDDILGFIIEAR-RFIGRSDSSLGGSKRSLVEVS------HPERFGIGLSAVIQNHLG

Query:  VVVVAMQMEFQQGCVEAEAGQALVLLSGLRIAEEMGLSSLWVKVDALVMV
         ++VA  M F  GC+  +  +A  +  GLR+AE   +S  WV  D+ V++
Subjt:  VVVVAMQMEFQQGCVEAEAGQALVLLSGLRIAEEMGLSSLWVKVDALVMV

KAF4400621.1 hypothetical protein G4B88_023029 [Cannabis sativa]3.3e-0427.74Show/hide
Query:  LRSDEFLLFGVICWVIWEDKNKILFGSVVASVSINVEWILGYGDDILGFIIEARRFIGRSDSS------------LGGSKRSLVEVSHPERFGIGLSAVI
        L  +EF  F    W+IW+ +N  +F   V+     + W L   +  LG  ++ +  +  + S+            +  +  SLV+       G GLSAVI
Subjt:  LRSDEFLLFGVICWVIWEDKNKILFGSVVASVSINVEWILGYGDDILGFIIEARRFIGRSDSS------------LGGSKRSLVEVSHPERFGIGLSAVI

Query:  QNHLGVVVVAMQMEFQQGCVEAEAGQALVLLSGLRIAEEMGLSSLWVKVDALVMV
        ++  G ++VA  M F  GC+  +  +A  +  GLR+AE   +S  WV  D+ V++
Subjt:  QNHLGVVVVAMQMEFQQGCVEAEAGQALVLLSGLRIAEEMGLSSLWVKVDALVMV

KAF4402710.1 hypothetical protein G4B88_012495 [Cannabis sativa]7.4e-0425.62Show/hide
Query:  LRSDEFLLFGVICWVIWEDKNKILFGSVVASVSINVEWILGYGDDILG---------------FIIEARR--FIGRSDSSLGGSKRSLVEVSHPERFGIG
        L  +EF+ F    W+IW+ +N+ +F +    +   + W +   + +LG               F     +  FI  SD+SL   +            G G
Subjt:  LRSDEFLLFGVICWVIWEDKNKILFGSVVASVSINVEWILGYGDDILG---------------FIIEARR--FIGRSDSSLGGSKRSLVEVSHPERFGIG

Query:  LSAVIQNHLGVVVVAMQMEFQQGCVEAEAGQALVLLSGLRIAEEMGLSSLWVKVDALVMV
        +SA+I+N  G ++VA  M +  GC+     +A  +L GL++A +  +S++WV  D+  M+
Subjt:  LSAVIQNHLGVVVVAMQMEFQQGCVEAEAGQALVLLSGLRIAEEMGLSSLWVKVDALVMV

TrEMBL top hitse value%identityAlignment
A0A6P5RCL8 uncharacterized protein LOC1107467418.0e-0428.82Show/hide
Query:  FISNLVSIAAGLLRSDEFLLFGVICWVIWEDKNKILFGSVV--------ASVSINVEWI---LGYG---DDILGFIIEARRFIGRSDSSLGGSKRSLVEV
        F+ NL+S   G       ++F + CW IW  +NK +F   V           +  VEW+   +G G   D +L F+  A   IG+   ++ GS+R+   +
Subjt:  FISNLVSIAAGLLRSDEFLLFGVICWVIWEDKNKILFGSVV--------ASVSINVEWI---LGYG---DDILGFIIEARRFIGRSDSSLGGSKRSLVEV

Query:  SHPERFGIGLSAVIQNHLGVVVVAMQMEFQQG-CVEAEAGQALVLLSGLRIAEEMGLSSLWVKVDALVMV
               IG   VI++  G  +    +   QG  +EAE      L  GL++A E G+++L +++DA V V
Subjt:  SHPERFGIGLSAVIQNHLGVVVVAMQMEFQQG-CVEAEAGQALVLLSGLRIAEEMGLSSLWVKVDALVMV

A0A7J6GAB1 RNase H domain-containing protein6.1e-0428.37Show/hide
Query:  DEFLLFGVICWVIWEDKNKILFGSVVASVSINVEWILGYGDDILGFIIE------ARRFIGRSDSSLGGSKRSLVEVSHPERFGIGLSAVIQNHLGVVVV
        D F+LF  + W+IW  +NK +F        + +EW     D  L  +         +  +  S    G  K +        + G GL  VI++HLG+VVV
Subjt:  DEFLLFGVICWVIWEDKNKILFGSVVASVSINVEWILGYGDDILGFIIE------ARRFIGRSDSSLGGSKRSLVEVSHPERFGIGLSAVIQNHLGVVVV

Query:  AMQMEFQQGCVEAEAGQALVLLSGLRIAEEMGLSSLWVKVD
        A +  +  GC+     ++L + SGL +A    LSS+ +  D
Subjt:  AMQMEFQQGCVEAEAGQALVLLSGLRIAEEMGLSSLWVKVD

A0A7J6HHY1 RNase H domain-containing protein2.1e-0428Show/hide
Query:  LRSDEFLLFGVICWVIWEDKNKILFGSVVASVSINVEWILGYGDDILGFIIEAR-RFIGRSDSSLGGSKRSLVEVS------HPERFGIGLSAVIQNHLG
        L  +EF  F    W+IW+ +N  +F   V+     + W L   +  LG   +        + ++     + LV ++      H +  G GLSAVI++  G
Subjt:  LRSDEFLLFGVICWVIWEDKNKILFGSVVASVSINVEWILGYGDDILGFIIEAR-RFIGRSDSSLGGSKRSLVEVS------HPERFGIGLSAVIQNHLG

Query:  VVVVAMQMEFQQGCVEAEAGQALVLLSGLRIAEEMGLSSLWVKVDALVMV
         ++VA  M F  GC+  +  +A  +  GLR+AE   +S  WV  D+ V++
Subjt:  VVVVAMQMEFQQGCVEAEAGQALVLLSGLRIAEEMGLSSLWVKVDALVMV

A0A7J6HP67 Uncharacterized protein8.0e-0424.52Show/hide
Query:  GLLRSDEFLLFGVICWVIWEDKNKILFGSVVASVSINVEWILGYGDDILGFIIEARRFIG----------RSDSSLGGSKRSLVEVSHPERFGIGLSAVI
        G L ++E + F  I W+IW+ +NK+LF +    V + V W     +D  G ++  R+ +             D     +  S+++    ++ G GLSAVI
Subjt:  GLLRSDEFLLFGVICWVIWEDKNKILFGSVVASVSINVEWILGYGDDILGFIIEARRFIG----------RSDSSLGGSKRSLVEVSHPERFGIGLSAVI

Query:  QNHLGVVVVAMQMEFQQGCVEAEAGQALVLLSGLRIAEEMGLSSLWVKVDALVMV
        + H G ++VA  + F  G +     +   +  G+ +A+   L  +    D++ +V
Subjt:  QNHLGVVVVAMQMEFQQGCVEAEAGQALVLLSGLRIAEEMGLSSLWVKVDALVMV

A0A7J6I0M5 RNase H domain-containing protein1.6e-0427.74Show/hide
Query:  LRSDEFLLFGVICWVIWEDKNKILFGSVVASVSINVEWILGYGDDILGFIIEARRFIGRSDSS------------LGGSKRSLVEVSHPERFGIGLSAVI
        L  +EF  F    W+IW+ +N  +F   V+     + W L   +  LG  ++ +  +  + S+            +  +  SLV+       G GLSAVI
Subjt:  LRSDEFLLFGVICWVIWEDKNKILFGSVVASVSINVEWILGYGDDILGFIIEARRFIGRSDSS------------LGGSKRSLVEVSHPERFGIGLSAVI

Query:  QNHLGVVVVAMQMEFQQGCVEAEAGQALVLLSGLRIAEEMGLSSLWVKVDALVMV
        ++  G ++VA  M F  GC+  +  +A  +  GLR+AE   +S  WV  D+ V++
Subjt:  QNHLGVVVVAMQMEFQQGCVEAEAGQALVLLSGLRIAEEMGLSSLWVKVDALVMV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATGTACATATTGGCGGTATGTAAAAACGACCATTTTCATCTCGAATCTGGTGTCTATTGCTGCTGGGTTGCTTCGATCTGATGAGTTTTTGTTGTTTGGAGTTAT
ATGTTGGGTGATTTGGGAGGATAAGAATAAAATTTTGTTTGGGTCTGTGGTGGCATCTGTTTCGATTAACGTTGAATGGATTTTGGGTTATGGGGATGATATTTTAGGTT
TCATTATTGAGGCTCGTCGGTTCATAGGGAGGAGCGACTCGAGTCTGGGGGGCTCTAAGAGATCTCTGGTTGAAGTGTCTCATCCAGAGAGATTTGGTATTGGTTTGAGT
GCTGTTATTCAAAATCATTTGGGTGTTGTGGTGGTGGCGATGCAAATGGAGTTCCAGCAGGGTTGTGTGGAGGCAGAAGCTGGACAGGCGTTGGTTTTGCTGTCGGGCCT
AAGAATTGCCGAGGAGATGGGTCTTTCATCTCTGTGGGTAAAGGTCGATGCTCTGGTGATGGTGAAGAATTGTCCAATCCATGAGTTTTATCTTATCTCCATATAG
mRNA sequenceShow/hide mRNA sequence
ATGACATGTACATATTGGCGGTATGTAAAAACGACCATTTTCATCTCGAATCTGGTGTCTATTGCTGCTGGGTTGCTTCGATCTGATGAGTTTTTGTTGTTTGGAGTTAT
ATGTTGGGTGATTTGGGAGGATAAGAATAAAATTTTGTTTGGGTCTGTGGTGGCATCTGTTTCGATTAACGTTGAATGGATTTTGGGTTATGGGGATGATATTTTAGGTT
TCATTATTGAGGCTCGTCGGTTCATAGGGAGGAGCGACTCGAGTCTGGGGGGCTCTAAGAGATCTCTGGTTGAAGTGTCTCATCCAGAGAGATTTGGTATTGGTTTGAGT
GCTGTTATTCAAAATCATTTGGGTGTTGTGGTGGTGGCGATGCAAATGGAGTTCCAGCAGGGTTGTGTGGAGGCAGAAGCTGGACAGGCGTTGGTTTTGCTGTCGGGCCT
AAGAATTGCCGAGGAGATGGGTCTTTCATCTCTGTGGGTAAAGGTCGATGCTCTGGTGATGGTGAAGAATTGTCCAATCCATGAGTTTTATCTTATCTCCATATAG
Protein sequenceShow/hide protein sequence
MTCTYWRYVKTTIFISNLVSIAAGLLRSDEFLLFGVICWVIWEDKNKILFGSVVASVSINVEWILGYGDDILGFIIEARRFIGRSDSSLGGSKRSLVEVSHPERFGIGLS
AVIQNHLGVVVVAMQMEFQQGCVEAEAGQALVLLSGLRIAEEMGLSSLWVKVDALVMVKNCPIHEFYLISI