; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10018942 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018942
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionglycine-rich RNA-binding protein 2-like
Genome locationChr04:12076394..12076954
RNA-Seq ExpressionHG10018942
SyntenyHG10018942
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608571.1 hypothetical protein SDJN03_01913, partial [Cucurbita argyrosperma subsp. sororia]1.0e-5676.97Show/hide
Query:  LVVFAAVIYGSRAEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGW----GGGGGGGGGSGGGGGGWGLGGGGGGW
        LV F   +YGSRAEGL NG      TFLTFSELP+GNAGE  RN+S NTTTVEVSK+N  GGGGGYGWGW    GGGGGGGGG GGGGGGWG GGGGGGW
Subjt:  LVVFAAVIYGSRAEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGW----GGGGGGGGGSGGGGGGWGLGGGGGGW

Query:  WKWGCGGQRKSERVGRRDGRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR
        WKWGCGGQ KS R  R  GRRKNV+RK++Y+E+DY MGEFA+CMVKGRC+GMRLDCPLHC GPCFYDCRYMCKAHCRR
Subjt:  WKWGCGGQRKSERVGRRDGRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR

KAG7037889.1 hypothetical protein SDJN02_01520, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-5574.18Show/hide
Query:  VVFAAVIYGSRAEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGW---------GGGGGGGGGSGGGGGGWGLGGG
        + F   +YGSRAEGL NG      TFLTFSELP+GNAGE  RN+S NTTTVEVSK+N  GGGGGYGWGW         GGGGGGGGG GGGGGGWG GGG
Subjt:  VVFAAVIYGSRAEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGW---------GGGGGGGGGSGGGGGGWGLGGG

Query:  GGGWWKWGCGGQRKSERVGRRDGRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR
        GGGWWKWGCGGQ KS R  R  GRRKNV+RK++Y+E+DY MGEFA+CMVKGRC+GMRLDCPLHC GPCFYDCRYMCKAHCRR
Subjt:  GGGWWKWGCGGQRKSERVGRRDGRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR

XP_008455258.1 PREDICTED: keratin, type II cytoskeletal 1 [Cucumis melo]2.0e-7383.59Show/hide
Query:  MGWENPIKLCALVVFAAVIYGSR-AEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRN-GGGGGGGYGWGW------GGGGGGGGGSG
        MGWENPIKL ALV+ A VIYGSR AEGLGNGSMP NVTFLTFSELPQ NAGE RRN+S NT+TVEVSK+N GGGGGGGYGWGW      GGGGGGGGG G
Subjt:  MGWENPIKLCALVVFAAVIYGSR-AEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRN-GGGGGGGYGWGW------GGGGGGGGGSG

Query:  GGGGGWGLGGGGGGWWKWGCGGQRKSERVGRRD--GRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR
        GGGGGWG GGGGGGWWKWGCGG+ K E+VGRRD  GRRKNV RKKMY+EKDYRMGEFAQCMVKGRC+GMRLDCPLHC GPCFYDCRYMCKAHC R
Subjt:  GGGGGWGLGGGGGGWWKWGCGGQRKSERVGRRD--GRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR

XP_011659711.1 keratin, type II cytoskeletal 2 epidermal [Cucumis sativus]1.3e-7283.77Show/hide
Query:  MGWENPIKLCALVVFAAVIYGSR-AEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGW---GGGGGGGGGSGGGGG
        MGWENPIKL ALV+ A VI GSR AEGLGNGSMP NVTFLTFSELPQ NAGE RRN+S N+TTVEVSK+NGGGGGGGYGWGW   GGGGGGGGG GGGGG
Subjt:  MGWENPIKLCALVVFAAVIYGSR-AEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGW---GGGGGGGGGSGGGGG

Query:  GWGLGGGGGGWWKWGCGGQRKSERVGRRD--GRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR
        GWG GGGGGGWWKWGCGGQ KSERVGRRD  G  +NV  K+MY EKDYRMGEFAQCMVKGRC+GMRLDCPLHC GPCFYDCRYMCKAHC R
Subjt:  GWGLGGGGGGWWKWGCGGQRKSERVGRRD--GRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR

XP_022940700.1 glycine-rich RNA-binding protein 2-like [Cucurbita moschata]4.7e-5477.65Show/hide
Query:  IYGSRAEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGW---GGGGGGGGGSGGGGGGWGLGGGGGGWWKWGCGGQ
        +YGSRAEGL NG      TFLTFSELP GNAGE  RN+S NTTTVEVSK+N  GGGGGYGWGW   GGGGGGGGG GGGGGGWG GGGGGGWWKWGCGGQ
Subjt:  IYGSRAEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGW---GGGGGGGGGSGGGGGGWGLGGGGGGWWKWGCGGQ

Query:  RKSERVGRRDGRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR
         KS R  R  GRRKNV+RK++Y+E+DY +GEFA+CMVKGRC+GMRLDCPLHC GPCFYDCR+MCKAHCRR
Subjt:  RKSERVGRRDGRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR

TrEMBL top hitse value%identityAlignment
A0A0A0K766 Uncharacterized protein6.4e-7383.77Show/hide
Query:  MGWENPIKLCALVVFAAVIYGSR-AEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGW---GGGGGGGGGSGGGGG
        MGWENPIKL ALV+ A VI GSR AEGLGNGSMP NVTFLTFSELPQ NAGE RRN+S N+TTVEVSK+NGGGGGGGYGWGW   GGGGGGGGG GGGGG
Subjt:  MGWENPIKLCALVVFAAVIYGSR-AEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGW---GGGGGGGGGSGGGGG

Query:  GWGLGGGGGGWWKWGCGGQRKSERVGRRD--GRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR
        GWG GGGGGGWWKWGCGGQ KSERVGRRD  G  +NV  K+MY EKDYRMGEFAQCMVKGRC+GMRLDCPLHC GPCFYDCRYMCKAHC R
Subjt:  GWGLGGGGGGWWKWGCGGQRKSERVGRRD--GRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR

A0A1S3C029 keratin, type II cytoskeletal 19.9e-7483.59Show/hide
Query:  MGWENPIKLCALVVFAAVIYGSR-AEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRN-GGGGGGGYGWGW------GGGGGGGGGSG
        MGWENPIKL ALV+ A VIYGSR AEGLGNGSMP NVTFLTFSELPQ NAGE RRN+S NT+TVEVSK+N GGGGGGGYGWGW      GGGGGGGGG G
Subjt:  MGWENPIKLCALVVFAAVIYGSR-AEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRN-GGGGGGGYGWGW------GGGGGGGGGSG

Query:  GGGGGWGLGGGGGGWWKWGCGGQRKSERVGRRD--GRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR
        GGGGGWG GGGGGGWWKWGCGG+ K E+VGRRD  GRRKNV RKKMY+EKDYRMGEFAQCMVKGRC+GMRLDCPLHC GPCFYDCRYMCKAHC R
Subjt:  GGGGGWGLGGGGGGWWKWGCGGQRKSERVGRRD--GRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR

A0A498HUM3 Uncharacterized protein4.6e-3145.73Show/hide
Query:  KLCALVVFAAVIYGSRAEG--LGNGSMPT------NVTFLTFSELPQ-GNAGEIRRNNSDNTTTVEVSKR------------------------------
        KL  ++       GS A G  L NG   +      N +FL  +E+P  G  GE++   +  TT V+++ +                              
Subjt:  KLCALVVFAAVIYGSRAEG--LGNGSMPT------NVTFLTFSELPQ-GNAGEIRRNNSDNTTTVEVSKR------------------------------

Query:  -----NGGGGGGGYGWGWGGGGGGGGGSGGGGG----------GWGLGGGGGGWWKWGCGGQRKSER--VGRRDGRRKNVNRKKMYDEKDYRMGEFAQCM
              GGGGGGGY WGWGGGGGGGGG GGGGG          GWG GGGG GWWKWGCGG +   R   GRR+       RK+ +DE++Y MGEFAQCM
Subjt:  -----NGGGGGGGYGWGWGGGGGGGGGSGGGGG----------GWGLGGGGGGWWKWGCGGQRKSER--VGRRDGRRKNVNRKKMYDEKDYRMGEFAQCM

Query:  VKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR
         KG+CKGMRLDCPLHC GPCFYDC++MCKAHCRR
Subjt:  VKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR

A0A540M1B0 Uncharacterized protein2.7e-3147.09Show/hide
Query:  KLCALVVFAAVIYGSRAEG--LGNGSMPT--------NVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKR----------------------NGGGGGG
        KL  L+     I GS A G  L NG+  +          + L  +E+P    GE+R   +  TT V+++ +                        GGGGG
Subjt:  KLCALVVFAAVIYGSRAEG--LGNGSMPT--------NVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKR----------------------NGGGGGG

Query:  GYGWGWGGGGGGGGGSG---------GGGGGWGLGGGGGGWWKWGCGGQRKSERVGRRDGRRKNVN----RKKMYDEKDYRMGEFAQCMVKGRCKGMRLD
        GY WGWGGGGGGGGG G         GGG GWG GGGG GWWKWGCGG +   + GR  GRR + +     K+ +DE++Y +GEFAQCM KGRCKGMRLD
Subjt:  GYGWGWGGGGGGGGGSG---------GGGGGWGLGGGGGGWWKWGCGGQRKSERVGRRDGRRKNVN----RKKMYDEKDYRMGEFAQCMVKGRCKGMRLD

Query:  CPLHCDGPCFYDCRYMCKAHCRR
        CPLHC GPCFYDC++MCKAHCRR
Subjt:  CPLHCDGPCFYDCRYMCKAHCRR

A0A6J1FRC8 glycine-rich RNA-binding protein 2-like2.3e-5477.65Show/hide
Query:  IYGSRAEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGW---GGGGGGGGGSGGGGGGWGLGGGGGGWWKWGCGGQ
        +YGSRAEGL NG      TFLTFSELP GNAGE  RN+S NTTTVEVSK+N  GGGGGYGWGW   GGGGGGGGG GGGGGGWG GGGGGGWWKWGCGGQ
Subjt:  IYGSRAEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGW---GGGGGGGGGSGGGGGGWGLGGGGGGWWKWGCGGQ

Query:  RKSERVGRRDGRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR
         KS R  R  GRRKNV+RK++Y+E+DY +GEFA+CMVKGRC+GMRLDCPLHC GPCFYDCR+MCKAHCRR
Subjt:  RKSERVGRRDGRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G75550.1 glycine-rich protein3.3e-2152.08Show/hide
Query:  NNSDNTTTVEV----SKRNGGGGGGGYGWGWGGGGGGGGGSGGGGG---------GWGLGGGGGGWWKWGCGGQRKSERVGRRDGRRKNVNRKKMYDEKD
        NN +N+TT  V     KR+  GG G Y WGWGGGGGGGGG GGGGG         GWG GGGGGGW+KWGCGG  K +    R+GR + V R        
Subjt:  NNSDNTTTVEV----SKRNGGGGGGGYGWGWGGGGGGGGGSGGGGG---------GWGLGGGGGGWWKWGCGGQRKSERVGRRDGRRKNVNRKKMYDEKD

Query:  YRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR
            E+A+C  +G+C G RL+CP HC G CFYDC ++CK HCRR
Subjt:  YRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTGGGAAAATCCAATTAAATTATGTGCTTTGGTGGTTTTTGCAGCAGTGATTTATGGGTCAAGAGCTGAGGGTTTGGGAAATGGAAGTATGCCCACAAATGTCAC
TTTCTTGACATTCTCAGAGCTGCCACAGGGGAATGCAGGGGAGATCAGAAGAAACAATTCAGACAATACTACAACGGTTGAGGTCAGCAAGCGGAATGGGGGTGGCGGTG
GCGGTGGCTATGGATGGGGATGGGGTGGAGGCGGCGGTGGTGGTGGAGGAAGTGGTGGTGGTGGTGGTGGATGGGGATTGGGAGGAGGTGGAGGTGGGTGGTGGAAATGG
GGTTGCGGAGGACAGCGAAAATCCGAGAGAGTTGGACGACGTGACGGACGGAGAAAAAATGTTAACCGGAAGAAAATGTACGACGAGAAAGATTATAGAATGGGAGAATT
TGCACAATGTATGGTGAAAGGAAGATGCAAAGGAATGAGATTAGACTGCCCACTTCATTGCGACGGACCTTGCTTTTATGATTGTCGATACATGTGTAAAGCTCACTGTC
GACGCTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGTGGGAAAATCCAATTAAATTATGTGCTTTGGTGGTTTTTGCAGCAGTGATTTATGGGTCAAGAGCTGAGGGTTTGGGAAATGGAAGTATGCCCACAAATGTCAC
TTTCTTGACATTCTCAGAGCTGCCACAGGGGAATGCAGGGGAGATCAGAAGAAACAATTCAGACAATACTACAACGGTTGAGGTCAGCAAGCGGAATGGGGGTGGCGGTG
GCGGTGGCTATGGATGGGGATGGGGTGGAGGCGGCGGTGGTGGTGGAGGAAGTGGTGGTGGTGGTGGTGGATGGGGATTGGGAGGAGGTGGAGGTGGGTGGTGGAAATGG
GGTTGCGGAGGACAGCGAAAATCCGAGAGAGTTGGACGACGTGACGGACGGAGAAAAAATGTTAACCGGAAGAAAATGTACGACGAGAAAGATTATAGAATGGGAGAATT
TGCACAATGTATGGTGAAAGGAAGATGCAAAGGAATGAGATTAGACTGCCCACTTCATTGCGACGGACCTTGCTTTTATGATTGTCGATACATGTGTAAAGCTCACTGTC
GACGCTCCTAA
Protein sequenceShow/hide protein sequence
MGWENPIKLCALVVFAAVIYGSRAEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGWGGGGGGGGGSGGGGGGWGLGGGGGGWWKW
GCGGQRKSERVGRRDGRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRRS