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HG10018983 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018983
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
Genome locationChr04:13117224..13117571
RNA-Seq ExpressionHG10018983
SyntenyHG10018983
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8648586.1 hypothetical protein Csa_008875 [Cucumis sativus]9.2e-0858.82Show/hide
Query:  ISKSGGLGWVLRDHLGHVCLVGLKCIPQCNEVKILEVMTICYGLESVSSFH
        IS S GLG VL+DH G V LVG K + +C EV++LE MTIC+GL+++SS H
Subjt:  ISKSGGLGWVLRDHLGHVCLVGLKCIPQCNEVKILEVMTICYGLESVSSFH

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]8.3e-0932.41Show/hide
Query:  MNIDVAWSPISKSGGLGWVLRDHLGHVCLVGLKCIPQCNEVKILEVMTICYGLESVSSFHSSNLMVESNCLEVVHLLNDEVVDIFEVSFFIVEAKGCGCD
        +N + AW   + +GG+GW+LRD  G V     + I     +  LEVM IC GL ++   H   + +ES+ LE +HLL+ +  D  E+ + + E      D
Subjt:  MNIDVAWSPISKSGGLGWVLRDHLGHVCLVGLKCIPQCNEVKILEVMTICYGLESVSSFHSSNLMVESNCLEVVHLLNDEVVDIFEVSFFIVEAKGCGCD

Query:  LGVASFSH
        + + S  H
Subjt:  LGVASFSH

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]9.2e-0838.27Show/hide
Query:  MNIDVAWSPISKSGGLGWVLRDHLGHVCLVGLKCIPQCNEVKILEVMTICYGLESVSSFHSSNLMVESNCLEVVHLLNDEV
        +N D AW   + + G+GW+LRD  G V   G + I     +  LEVM IC GL ++   H   + +ES+ LE +HLL+  V
Subjt:  MNIDVAWSPISKSGGLGWVLRDHLGHVCLVGLKCIPQCNEVKILEVMTICYGLESVSSFHSSNLMVESNCLEVVHLLNDEV

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]9.2e-0838.27Show/hide
Query:  MNIDVAWSPISKSGGLGWVLRDHLGHVCLVGLKCIPQCNEVKILEVMTICYGLESVSSFHSSNLMVESNCLEVVHLLNDEV
        +N D AW   + + G+GW+LRD  G V   G + I     +  LEVM IC GL ++   H   + +ES+ LE +HLL+  V
Subjt:  MNIDVAWSPISKSGGLGWVLRDHLGHVCLVGLKCIPQCNEVKILEVMTICYGLESVSSFHSSNLMVESNCLEVVHLLNDEV

XP_038886170.1 uncharacterized protein LOC120076417 [Benincasa hispida]1.6e-2355.05Show/hide
Query:  MNIDVAWSPISKSGGLGWVLRDHLGHVCLVGLKCIPQCNEVKILEVMTICYGLESVSSFHSSNLMVESNCL-EVVHLLNDEVVDIFEVSFFIVEAKGCGC
        +N+D +W+    + GLGWV  DHL  VC+ GLK + +C +V ILE + IC+GLE +SS   SN+MVES+CL EV++LLND+VVD+ EVSF   EAK  G 
Subjt:  MNIDVAWSPISKSGGLGWVLRDHLGHVCLVGLKCIPQCNEVKILEVMTICYGLESVSSFHSSNLMVESNCL-EVVHLLNDEVVDIFEVSFFIVEAKGCGC

Query:  DLGVASFSH
        +LGV SFSH
Subjt:  DLGVASFSH

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134124.0e-0932.41Show/hide
Query:  MNIDVAWSPISKSGGLGWVLRDHLGHVCLVGLKCIPQCNEVKILEVMTICYGLESVSSFHSSNLMVESNCLEVVHLLNDEVVDIFEVSFFIVEAKGCGCD
        +N + AW   + +GG+GW+LRD  G V     + I     +  LEVM IC GL ++   H   + +ES+ LE +HLL+ +  D  E+ + + E      D
Subjt:  MNIDVAWSPISKSGGLGWVLRDHLGHVCLVGLKCIPQCNEVKILEVMTICYGLESVSSFHSSNLMVESNCLEVVHLLNDEVVDIFEVSFFIVEAKGCGCD

Query:  LGVASFSH
        + + S  H
Subjt:  LGVASFSH

A0A6J1D5W1 uncharacterized protein LOC1110173297.6e-0830.43Show/hide
Query:  MNIDVAWSPISKSGGLGWVLRDHLGHVCLVGLKCIPQCNEVKILEVMTICYGLESVSSFHSSNLMVESNCLEVVHLLNDEVVDIFEVSFFIVEAKGCGCD
        +N D AW      GGLGW++R+    +   G + I    ++  LE+M I  G+E+V S  S +L++ES  LE +HL+     ++ E+ + + + K  G  
Subjt:  MNIDVAWSPISKSGGLGWVLRDHLGHVCLVGLKCIPQCNEVKILEVMTICYGLESVSSFHSSNLMVESNCLEVVHLLNDEVVDIFEVSFFIVEAKGCGCD

Query:  LGVASFSHGHCSQNS
          +  F H     NS
Subjt:  LGVASFSHGHCSQNS

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X14.5e-0838.27Show/hide
Query:  MNIDVAWSPISKSGGLGWVLRDHLGHVCLVGLKCIPQCNEVKILEVMTICYGLESVSSFHSSNLMVESNCLEVVHLLNDEV
        +N D AW   + + G+GW+LRD  G V   G + I     +  LEVM IC GL ++   H   + +ES+ LE +HLL+  V
Subjt:  MNIDVAWSPISKSGGLGWVLRDHLGHVCLVGLKCIPQCNEVKILEVMTICYGLESVSSFHSSNLMVESNCLEVVHLLNDEV

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X24.5e-0838.27Show/hide
Query:  MNIDVAWSPISKSGGLGWVLRDHLGHVCLVGLKCIPQCNEVKILEVMTICYGLESVSSFHSSNLMVESNCLEVVHLLNDEV
        +N D AW   + + G+GW+LRD  G V   G + I     +  LEVM IC GL ++   H   + +ES+ LE +HLL+  V
Subjt:  MNIDVAWSPISKSGGLGWVLRDHLGHVCLVGLKCIPQCNEVKILEVMTICYGLESVSSFHSSNLMVESNCLEVVHLLNDEV

A0A6J1DSV1 uncharacterized protein LOC1110236081.7e-0731.03Show/hide
Query:  MNIDVAWSPISKSGGLGWVLRDHLGHVCLVGLKCIPQCNEVKILEVMTICYGLESVSSFHSSNLM--------VESNCLEVVHLLNDEVVDIFEVSFFIV
        +N D AW   + +GG+GW+LRD  G V     + I     +  LEVM IC GL ++   H   +         +ES+ LE +HLL+ +  D  E+ + + 
Subjt:  MNIDVAWSPISKSGGLGWVLRDHLGHVCLVGLKCIPQCNEVKILEVMTICYGLESVSSFHSSNLM--------VESNCLEVVHLLNDEVVDIFEVSFFIV

Query:  EAKGCGCDLGVASFSH
        E      D+ + S  H
Subjt:  EAKGCGCDLGVASFSH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATATTGATGTTGCTTGGAGCCCGATTTCTAAATCAGGAGGCCTAGGATGGGTGCTGCGAGACCATCTGGGTCATGTCTGTCTTGTGGGTCTGAAATGTATCCCTCA
ATGTAATGAAGTAAAAATTCTTGAAGTAATGACCATTTGTTATGGGCTTGAGAGTGTTTCATCATTCCACTCGTCAAATCTTATGGTGGAGTCTAACTGTTTGGAAGTTG
TTCATTTGCTGAATGATGAAGTGGTCGACATTTTTGAAGTCTCATTCTTTATTGTCGAGGCTAAGGGCTGTGGATGTGATTTGGGAGTTGCCTCTTTCTCTCATGGTCAT
TGCAGTCAGAACTCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATATTGATGTTGCTTGGAGCCCGATTTCTAAATCAGGAGGCCTAGGATGGGTGCTGCGAGACCATCTGGGTCATGTCTGTCTTGTGGGTCTGAAATGTATCCCTCA
ATGTAATGAAGTAAAAATTCTTGAAGTAATGACCATTTGTTATGGGCTTGAGAGTGTTTCATCATTCCACTCGTCAAATCTTATGGTGGAGTCTAACTGTTTGGAAGTTG
TTCATTTGCTGAATGATGAAGTGGTCGACATTTTTGAAGTCTCATTCTTTATTGTCGAGGCTAAGGGCTGTGGATGTGATTTGGGAGTTGCCTCTTTCTCTCATGGTCAT
TGCAGTCAGAACTCGTAG
Protein sequenceShow/hide protein sequence
MNIDVAWSPISKSGGLGWVLRDHLGHVCLVGLKCIPQCNEVKILEVMTICYGLESVSSFHSSNLMVESNCLEVVHLLNDEVVDIFEVSFFIVEAKGCGCDLGVASFSHGH
CSQNS