; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10018985 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018985
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionGlycine cleavage T-protein family
Genome locationChr04:13158748..13159677
RNA-Seq ExpressionHG10018985
SyntenyHG10018985
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005515 - protein binding (molecular function)
GO:0016491 - oxidoreductase activity (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR013977 - Glycine cleavage T-protein, C-terminal barrel domain
IPR017703 - YgfZ/GcvT conserved site
IPR027266 - GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1
IPR029043 - Glycine cleavage T-protein/YgfZ, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7022574.1 putative transferase, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]3.0e-6693.48Show/hide
Query:  MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRKS-EHFGLGYIKKRAASSG
        MP+PQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDG++VGKLTSYTPGRK  EHFGLGYIKKRAASSG
Subjt:  MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRKS-EHFGLGYIKKRAASSG

Query:  DTVIVGENTIGRVVEVPFLARQQPLSNSSSNTPQSSVQ
        DTVIVGENTIGRVVEVPFLARQ PLSN+SSN P+SSVQ
Subjt:  DTVIVGENTIGRVVEVPFLARQQPLSNSSSNTPQSSVQ

XP_004140110.1 putative transferase At1g60990, chloroplastic isoform X1 [Cucumis sativus]2.0e-6593.53Show/hide
Query:  MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRK-SEHFGLGYIKKRAASSG
        MP+PQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSY PGRK SEHFGLGYIKK+AAS G
Subjt:  MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRK-SEHFGLGYIKKRAASSG

Query:  DTVIVGENTIGRVVEVPFLARQQPLSN-SSSNTPQSSVQ
        D+VIVGENTIG+VVEVPFLARQQPLSN SSSNTP+SSVQ
Subjt:  DTVIVGENTIGRVVEVPFLARQQPLSN-SSSNTPQSSVQ

XP_022988791.1 putative transferase At1g60990, chloroplastic [Cucurbita maxima]6.1e-6794.93Show/hide
Query:  MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRKS-EHFGLGYIKKRAASSG
        MP+PQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGK+VGKLTSYTPGRK  EHFGLGYIKKRAASSG
Subjt:  MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRKS-EHFGLGYIKKRAASSG

Query:  DTVIVGENTIGRVVEVPFLARQQPLSNSSSNTPQSSVQ
        DTVIVGENTIGRVVEVPFLARQ PLSNSSSN P+SSVQ
Subjt:  DTVIVGENTIGRVVEVPFLARQQPLSNSSSNTPQSSVQ

XP_023531687.1 putative transferase At1g60990, chloroplastic [Cucurbita pepo subsp. pepo]2.3e-6694.2Show/hide
Query:  MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRKS-EHFGLGYIKKRAASSG
        MP+PQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGK+VGKLTSYTPGRK  EHFGLGYIKKRAASSG
Subjt:  MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRKS-EHFGLGYIKKRAASSG

Query:  DTVIVGENTIGRVVEVPFLARQQPLSNSSSNTPQSSVQ
        DTVIVGENTIGRVVEVPFLARQ PLSNS SN P+SSVQ
Subjt:  DTVIVGENTIGRVVEVPFLARQQPLSNSSSNTPQSSVQ

XP_038887599.1 putative transferase At1g60990, chloroplastic [Benincasa hispida]3.2e-6895.65Show/hide
Query:  MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRK-SEHFGLGYIKKRAASSG
        MP+PQKEL+DEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRK SEHFGLGYIKKRAAS+G
Subjt:  MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRK-SEHFGLGYIKKRAASSG

Query:  DTVIVGENTIGRVVEVPFLARQQPLSNSSSNTPQSSVQ
        DTVIVGENTIG+VVEVPFLARQQP+SNSSSNTPQSSVQ
Subjt:  DTVIVGENTIGRVVEVPFLARQQPLSNSSSNTPQSSVQ

TrEMBL top hitse value%identityAlignment
A0A0A0KJI9 Uncharacterized protein9.5e-6693.53Show/hide
Query:  MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRK-SEHFGLGYIKKRAASSG
        MP+PQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSY PGRK SEHFGLGYIKK+AAS G
Subjt:  MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRK-SEHFGLGYIKKRAASSG

Query:  DTVIVGENTIGRVVEVPFLARQQPLSN-SSSNTPQSSVQ
        D+VIVGENTIG+VVEVPFLARQQPLSN SSSNTP+SSVQ
Subjt:  DTVIVGENTIGRVVEVPFLARQQPLSN-SSSNTPQSSVQ

A0A5A7UN60 Putative transferase1.8e-6492.81Show/hide
Query:  MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRK-SEHFGLGYIKKRAASSG
        MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSY PGRK SEHFGLGYIKK+AAS G
Subjt:  MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRK-SEHFGLGYIKKRAASSG

Query:  DTVIVGENTIGRVVEVPFLARQQPLSNSS-SNTPQSSVQ
        DTVIVGE+T G VVEVPFLARQQPLSNSS S+TP+SSVQ
Subjt:  DTVIVGENTIGRVVEVPFLARQQPLSNSS-SNTPQSSVQ

A0A6J1DYD6 LOW QUALITY PROTEIN: putative transferase At1g60990, chloroplastic1.1e-6492.75Show/hide
Query:  MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRKS-EHFGLGYIKKRAASSG
        MP+PQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGS ITIDGKRVGKLTSYTPGRK  EHFGLGYIKKRAAS+G
Subjt:  MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRKS-EHFGLGYIKKRAASSG

Query:  DTVIVGENTIGRVVEVPFLARQQPLSNSSSNTPQSSVQ
        DTVIVGENTIG VVEVPFLARQQPLSNSSS T Q SV+
Subjt:  DTVIVGENTIGRVVEVPFLARQQPLSNSSSNTPQSSVQ

A0A6J1EI20 putative transferase At1g60990, chloroplastic2.8e-6592.75Show/hide
Query:  MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRKS-EHFGLGYIKKRAASSG
        MP+PQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGK+VGKLTSYTPGRK  EHFGLGYIKKRAAS G
Subjt:  MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRKS-EHFGLGYIKKRAASSG

Query:  DTVIVGENTIGRVVEVPFLARQQPLSNSSSNTPQSSVQ
        DTVIVGENTIGRVVEVPFLA Q PLSNSSSN P+ SVQ
Subjt:  DTVIVGENTIGRVVEVPFLARQQPLSNSSSNTPQSSVQ

A0A6J1JI89 putative transferase At1g60990, chloroplastic3.0e-6794.93Show/hide
Query:  MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRKS-EHFGLGYIKKRAASSG
        MP+PQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGK+VGKLTSYTPGRK  EHFGLGYIKKRAASSG
Subjt:  MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRKS-EHFGLGYIKKRAASSG

Query:  DTVIVGENTIGRVVEVPFLARQQPLSNSSSNTPQSSVQ
        DTVIVGENTIGRVVEVPFLARQ PLSNSSSN P+SSVQ
Subjt:  DTVIVGENTIGRVVEVPFLARQQPLSNSSSNTPQSSVQ

SwissProt top hitse value%identityAlignment
Q1INT8 Aminomethyltransferase2.4e-0531.25Show/hide
Query:  MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSP------ITIDGKRVGKLT--SYTPGRKSEHFGLGYIK
        +P    E++DE NV EAGL   + ++KG + G+  + +    DGVK+ L GL   +++E G P      + ++GK +G +T  SY P  K  +  L Y+ 
Subjt:  MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSP------ITIDGKRVGKLT--SYTPGRKSEHFGLGYIK

Query:  KRAASSGDTVIV
           ++  + V V
Subjt:  KRAASSGDTVIV

Q67N36 Aminomethyltransferase1.5e-0731.2Show/hide
Query:  MPSPQKELTDEFNVLEAGLWNSISLNKGC-YKGQETISRLITYDGVKQRLWGLQLSDSVEP--GSPITIDGKRVGKLT--SYTPGRKSEHFGLGYIKKRA
        +P    E++D+ N LEAGL  ++ L KG  + G++ ++R I   G  ++L G+++ D   P  G P+ + G+ VG++T  S++P    ++  L Y+    
Subjt:  MPSPQKELTDEFNVLEAGLWNSISLNKGC-YKGQETISRLITYDGVKQRLWGLQLSDSVEP--GSPITIDGKRVGKLT--SYTPGRKSEHFGLGYIKKRA

Query:  ASSG---DTVIVGENTIGRVVEVPF
        ++ G   + +I G     RVVE PF
Subjt:  ASSG---DTVIVGENTIGRVVEVPF

Q681Y3 Putative transferase At1g60990, chloroplastic1.5e-4772.31Show/hide
Query:  PSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRK-SEHFGLGYIKKRAASSGD
        P+P++EL+ EFNVLEAGLWNSISLNKGCYKGQETI+RL+TYDG+KQRL GL LS   EPGS IT+DGK+VGKLTSYT G+  S HFGLGYIKK+AAS G+
Subjt:  PSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRK-SEHFGLGYIKKRAASSGD

Query:  TVIVGENTIGRVVEVPFLARQQPLSNSSSN
        TV VGE+  G V EVP+LARQ P S +SS+
Subjt:  TVIVGENTIGRVVEVPFLARQQPLSNSSSN

Arabidopsis top hitse value%identityAlignment
AT1G60990.1 Glycine cleavage T-protein family1.0e-4872.31Show/hide
Query:  PSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRK-SEHFGLGYIKKRAASSGD
        P+P++EL+ EFNVLEAGLWNSISLNKGCYKGQETI+RL+TYDG+KQRL GL LS   EPGS IT+DGK+VGKLTSYT G+  S HFGLGYIKK+AAS G+
Subjt:  PSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRK-SEHFGLGYIKKRAASSGD

Query:  TVIVGENTIGRVVEVPFLARQQPLSNSSSN
        TV VGE+  G V EVP+LARQ P S +SS+
Subjt:  TVIVGENTIGRVVEVPFLARQQPLSNSSSN

AT1G60990.2 Glycine cleavage T-protein family1.0e-4872.31Show/hide
Query:  PSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRK-SEHFGLGYIKKRAASSGD
        P+P++EL+ EFNVLEAGLWNSISLNKGCYKGQETI+RL+TYDG+KQRL GL LS   EPGS IT+DGK+VGKLTSYT G+  S HFGLGYIKK+AAS G+
Subjt:  PSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRK-SEHFGLGYIKKRAASSGD

Query:  TVIVGENTIGRVVEVPFLARQQPLSNSSSN
        TV VGE+  G V EVP+LARQ P S +SS+
Subjt:  TVIVGENTIGRVVEVPFLARQQPLSNSSSN

AT1G60990.3 Glycine cleavage T-protein family1.0e-4872.31Show/hide
Query:  PSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRK-SEHFGLGYIKKRAASSGD
        P+P++EL+ EFNVLEAGLWNSISLNKGCYKGQETI+RL+TYDG+KQRL GL LS   EPGS IT+DGK+VGKLTSYT G+  S HFGLGYIKK+AAS G+
Subjt:  PSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRK-SEHFGLGYIKKRAASSGD

Query:  TVIVGENTIGRVVEVPFLARQQPLSNSSSN
        TV VGE+  G V EVP+LARQ P S +SS+
Subjt:  TVIVGENTIGRVVEVPFLARQQPLSNSSSN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATCTCCCCAGAAAGAGCTTACCGACGAATTCAATGTACTCGAAGCTGGTCTTTGGAATTCAATTTCTCTCAACAAGGGTTGTTACAAGGGACAAGAGACAATATC
TAGATTAATAACATATGATGGAGTAAAGCAGAGATTGTGGGGACTTCAGCTATCAGATTCTGTGGAACCTGGCAGCCCGATAACCATTGATGGAAAAAGGGTGGGAAAAC
TTACAAGCTATACACCAGGAAGAAAGTCGGAGCATTTTGGTCTTGGCTACATCAAGAAGCGAGCTGCTTCCAGTGGAGACACTGTAATTGTTGGAGAAAACACCATTGGT
AGGGTGGTGGAAGTTCCATTCTTAGCTCGACAACAACCTTTAAGCAACAGCTCAAGTAACACGCCTCAAAGCAGTGTACAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCATCTCCCCAGAAAGAGCTTACCGACGAATTCAATGTACTCGAAGCTGGTCTTTGGAATTCAATTTCTCTCAACAAGGGTTGTTACAAGGGACAAGAGACAATATC
TAGATTAATAACATATGATGGAGTAAAGCAGAGATTGTGGGGACTTCAGCTATCAGATTCTGTGGAACCTGGCAGCCCGATAACCATTGATGGAAAAAGGGTGGGAAAAC
TTACAAGCTATACACCAGGAAGAAAGTCGGAGCATTTTGGTCTTGGCTACATCAAGAAGCGAGCTGCTTCCAGTGGAGACACTGTAATTGTTGGAGAAAACACCATTGGT
AGGGTGGTGGAAGTTCCATTCTTAGCTCGACAACAACCTTTAAGCAACAGCTCAAGTAACACGCCTCAAAGCAGTGTACAATAG
Protein sequenceShow/hide protein sequence
MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRKSEHFGLGYIKKRAASSGDTVIVGENTIG
RVVEVPFLARQQPLSNSSSNTPQSSVQ