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HG10018989 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018989
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCACTA en-spm transposon protein
Genome locationChr04:13294530..13295692
RNA-Seq ExpressionHG10018989
SyntenyHG10018989
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046881.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa]8.7e-2156.25Show/hide
Query:  MVGPLDDNHQAEDEFNGANPLETTSSTEDTSDGTSTIRPSHGYSRNIELDRYVRLHGRIPFEITPELKKPIGPWAMRFSNAIGTAVREAFRVCCTS
        MVG LDDNH+A+DE    +P    SST +TSDG+S +  +HGYSRNIEL ++V   GR P EI  +LKK + PWA RFSN IG  VRE F V CT+
Subjt:  MVGPLDDNHQAEDEFNGANPLETTSSTEDTSDGTSTIRPSHGYSRNIELDRYVRLHGRIPFEITPELKKPIGPWAMRFSNAIGTAVREAFRVCCTS

KAA0050066.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa]9.7e-1239.71Show/hide
Query:  QAEDEFNGANPLETTSSTEDTSDGTST--IRPS---HGYSRNIELDRYVRLHGRIPFEITPELKKPIGPWAMRFSNAIGTAVREAFRVCCTSWKEVPAES
        Q ED+ +  N    +SS  D + G+S+  + P+      SR +EL+R+V ++GRIP  I P  +KPI P A+RFS AIG  VR+ F VCC  W +V  E 
Subjt:  QAEDEFNGANPLETTSSTEDTSDGTST--IRPS---HGYSRNIELDRYVRLHGRIPFEITPELKKPIGPWAMRFSNAIGTAVREAFRVCCTSWKEVPAES

Query:  IELVKSRLQSMPTLHK------RQQKQYIPTPYAKA
        IE+VK  LQ + T  +      R  K+Y     A+A
Subjt:  IELVKSRLQSMPTLHK------RQQKQYIPTPYAKA

KAA0057335.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa]2.5e-1249.38Show/hide
Query:  YSRNIELDRYVRLHGRIPFEITPELKKPIGPWAMRFSNAIGTAVREAFRVCCTSWKEVPAESIELVKSRLQSMPTLHKRQQ
        +SR +EL+R+V ++GRIP  I P ++KPI P A+RFS AIG  VR+ F VCC  W +V  E IE+VK  LQ +  L    Q
Subjt:  YSRNIELDRYVRLHGRIPFEITPELKKPIGPWAMRFSNAIGTAVREAFRVCCTSWKEVPAESIELVKSRLQSMPTLHKRQQ

KAA0057529.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa]9.7e-1242.73Show/hide
Query:  NPLETTSSTEDTSDGTSTIRPS-----HGYSRNIELDRYVRLHGRIPFEITPELKKPIGPWAMRFSNAIGTAVREAFRVCCTSWKEVPAESIELVKSRLQ
        N  E +SS  D + G+S+ + +        SR +EL+R+V ++GRIP  I PE +KPI P A+RFS AIG  VR+ F V C  W +V  E IE+VK  LQ
Subjt:  NPLETTSSTEDTSDGTSTIRPS-----HGYSRNIELDRYVRLHGRIPFEITPELKKPIGPWAMRFSNAIGTAVREAFRVCCTSWKEVPAESIELVKSRLQ

Query:  SMPTLHKRQQ
         +  L    Q
Subjt:  SMPTLHKRQQ

TYK11634.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa]2.5e-1249.38Show/hide
Query:  YSRNIELDRYVRLHGRIPFEITPELKKPIGPWAMRFSNAIGTAVREAFRVCCTSWKEVPAESIELVKSRLQSMPTLHKRQQ
        +SR +EL+R+V ++GRIP  I P ++KPI P A+RFS AIG  VR+ F VCC  W +V  E IE+VK  LQ +  L    Q
Subjt:  YSRNIELDRYVRLHGRIPFEITPELKKPIGPWAMRFSNAIGTAVREAFRVCCTSWKEVPAESIELVKSRLQSMPTLHKRQQ

TrEMBL top hitse value%identityAlignment
A0A5A7U7B2 CACTA en-spm transposon protein4.7e-1239.71Show/hide
Query:  QAEDEFNGANPLETTSSTEDTSDGTST--IRPS---HGYSRNIELDRYVRLHGRIPFEITPELKKPIGPWAMRFSNAIGTAVREAFRVCCTSWKEVPAES
        Q ED+ +  N    +SS  D + G+S+  + P+      SR +EL+R+V ++GRIP  I P  +KPI P A+RFS AIG  VR+ F VCC  W +V  E 
Subjt:  QAEDEFNGANPLETTSSTEDTSDGTST--IRPS---HGYSRNIELDRYVRLHGRIPFEITPELKKPIGPWAMRFSNAIGTAVREAFRVCCTSWKEVPAES

Query:  IELVKSRLQSMPTLHK------RQQKQYIPTPYAKA
        IE+VK  LQ + T  +      R  K+Y     A+A
Subjt:  IELVKSRLQSMPTLHK------RQQKQYIPTPYAKA

A0A5A7UUW3 CACTA en-spm transposon protein1.2e-1249.38Show/hide
Query:  YSRNIELDRYVRLHGRIPFEITPELKKPIGPWAMRFSNAIGTAVREAFRVCCTSWKEVPAESIELVKSRLQSMPTLHKRQQ
        +SR +EL+R+V ++GRIP  I P ++KPI P A+RFS AIG  VR+ F VCC  W +V  E IE+VK  LQ +  L    Q
Subjt:  YSRNIELDRYVRLHGRIPFEITPELKKPIGPWAMRFSNAIGTAVREAFRVCCTSWKEVPAESIELVKSRLQSMPTLHKRQQ

A0A5A7UVG1 CACTA en-spm transposon protein4.7e-1242.73Show/hide
Query:  NPLETTSSTEDTSDGTSTIRPS-----HGYSRNIELDRYVRLHGRIPFEITPELKKPIGPWAMRFSNAIGTAVREAFRVCCTSWKEVPAESIELVKSRLQ
        N  E +SS  D + G+S+ + +        SR +EL+R+V ++GRIP  I PE +KPI P A+RFS AIG  VR+ F V C  W +V  E IE+VK  LQ
Subjt:  NPLETTSSTEDTSDGTSTIRPS-----HGYSRNIELDRYVRLHGRIPFEITPELKKPIGPWAMRFSNAIGTAVREAFRVCCTSWKEVPAESIELVKSRLQ

Query:  SMPTLHKRQQ
         +  L    Q
Subjt:  SMPTLHKRQQ

A0A5D3BYK4 CACTA en-spm transposon protein4.2e-2156.25Show/hide
Query:  MVGPLDDNHQAEDEFNGANPLETTSSTEDTSDGTSTIRPSHGYSRNIELDRYVRLHGRIPFEITPELKKPIGPWAMRFSNAIGTAVREAFRVCCTS
        MVG LDDNH+A+DE    +P    SST +TSDG+S +  +HGYSRNIEL ++V   GR P EI  +LKK + PWA RFSN IG  VRE F V CT+
Subjt:  MVGPLDDNHQAEDEFNGANPLETTSSTEDTSDGTSTIRPSHGYSRNIELDRYVRLHGRIPFEITPELKKPIGPWAMRFSNAIGTAVREAFRVCCTS

A0A5D3CKE2 CACTA en-spm transposon protein1.2e-1249.38Show/hide
Query:  YSRNIELDRYVRLHGRIPFEITPELKKPIGPWAMRFSNAIGTAVREAFRVCCTSWKEVPAESIELVKSRLQSMPTLHKRQQ
        +SR +EL+R+V ++GRIP  I P ++KPI P A+RFS AIG  VR+ F VCC  W +V  E IE+VK  LQ +  L    Q
Subjt:  YSRNIELDRYVRLHGRIPFEITPELKKPIGPWAMRFSNAIGTAVREAFRVCCTSWKEVPAESIELVKSRLQSMPTLHKRQQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGGTCCACTTGATGATAACCACCAGGCAGAAGATGAGTTCAATGGTGCTAACCCTCTCGAGACAACATCTTCCACCGAGGATACTTCAGATGGTACTTCTACAAT
TAGGCCATCACATGGATACTCTCGTAACATTGAGTTGGATAGATATGTCCGATTGCATGGAAGAATTCCTTTCGAAATTACTCCTGAGTTGAAGAAACCCATTGGTCCTT
GGGCTATGAGATTTAGCAATGCTATTGGTACCGCCGTGAGAGAAGCTTTTCGTGTATGTTGCACATCATGGAAAGAGGTACCAGCAGAATCGATAGAGCTTGTTAAAAGT
CGACTTCAATCAATGCCGACGCTTCACAAGCGTCAGCAAAAACAATATATCCCGACGCCCTATGCAAAAGCGTGGGCAAAATTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTAGGTCCACTTGATGATAACCACCAGGCAGAAGATGAGTTCAATGGTGCTAACCCTCTCGAGACAACATCTTCCACCGAGGATACTTCAGATGGTACTTCTACAAT
TAGGCCATCACATGGATACTCTCGTAACATTGAGTTGGATAGATATGTCCGATTGCATGGAAGAATTCCTTTCGAAATTACTCCTGAGTTGAAGAAACCCATTGGTCCTT
GGGCTATGAGATTTAGCAATGCTATTGGTACCGCCGTGAGAGAAGCTTTTCGTGTATGTTGCACATCATGGAAAGAGGTACCAGCAGAATCGATAGAGCTTGTTAAAAGT
CGACTTCAATCAATGCCGACGCTTCACAAGCGTCAGCAAAAACAATATATCCCGACGCCCTATGCAAAAGCGTGGGCAAAATTTTAA
Protein sequenceShow/hide protein sequence
MVGPLDDNHQAEDEFNGANPLETTSSTEDTSDGTSTIRPSHGYSRNIELDRYVRLHGRIPFEITPELKKPIGPWAMRFSNAIGTAVREAFRVCCTSWKEVPAESIELVKS
RLQSMPTLHKRQQKQYIPTPYAKAWAKF