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HG10019002 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019002
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPlastid-lipid associated protein PAP / fibrillin family protein
Genome locationChr04:13603754..13613435
RNA-Seq ExpressionHG10019002
SyntenyHG10019002
Gene Ontology termsNA
InterPro domainsIPR006843 - Plastid lipid-associated protein/fibrillin conserved domain
IPR019825 - Legume lectin, beta chain, Mn/Ca-binding site
IPR039633 - Plastid-lipid-associated protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011660249.1 probable plastid-lipid-associated protein 4, chloroplastic isoform X1 [Cucumis sativus]1.9e-2995.77Show/hide
Query:  VTANLNPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSYQVPV
        VTA+L PLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSY+VPV
Subjt:  VTANLNPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSYQVPV

XP_015943695.1 probable plastid-lipid-associated protein 4, chloroplastic [Arachis duranensis]1.9e-2992.96Show/hide
Query:  VTANLNPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSYQVPV
        VTANL PLN+RKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELR+SRGDKGNLFILKM+DPSY+VPV
Subjt:  VTANLNPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSYQVPV

XP_023532027.1 probable plastid-lipid-associated protein 4, chloroplastic [Cucurbita pepo subsp. pepo]1.1e-2995.77Show/hide
Query:  VTANLNPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSYQVPV
        VTANL PLN+RKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSY+VPV
Subjt:  VTANLNPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSYQVPV

XP_025622440.1 probable plastid-lipid-associated protein 4, chloroplastic [Arachis hypogaea]1.9e-2992.96Show/hide
Query:  VTANLNPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSYQVPV
        VTANL PLN+RKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELR+SRGDKGNLFILKM+DPSY+VPV
Subjt:  VTANLNPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSYQVPV

XP_038887592.1 probable plastid-lipid-associated protein 4, chloroplastic [Benincasa hispida]5.0e-3074Show/hide
Query:  FLRGTPCYPSDSSQKRKIESDFDSPI--SVTANLNPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSYQVPV
        FLR    Y   +    + ++    P    VTANL PLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSY+VPV
Subjt:  FLRGTPCYPSDSSQKRKIESDFDSPI--SVTANLNPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSYQVPV

TrEMBL top hitse value%identityAlignment
A0A0A0M3B4 PAP_fibrillin domain-containing protein9.2e-3095.77Show/hide
Query:  VTANLNPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSYQVPV
        VTA+L PLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSY+VPV
Subjt:  VTANLNPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSYQVPV

A0A1S4DUY7 probable plastid-lipid-associated protein 4, chloroplastic isoform X22.0e-2994.37Show/hide
Query:  VTANLNPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSYQVPV
        VTA+L PLNSRKVAVQFDTFKILGLIPVKAPGRARGEL+ITYLDEELRISRGDKGNLFILKMIDPSY+VPV
Subjt:  VTANLNPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSYQVPV

A0A444WZC9 Uncharacterized protein9.2e-3092.96Show/hide
Query:  VTANLNPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSYQVPV
        VTANL PLN+RKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELR+SRGDKGNLFILKM+DPSY+VPV
Subjt:  VTANLNPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSYQVPV

A0A6J1DS61 probable plastid-lipid-associated protein 4, chloroplastic9.2e-3073Show/hide
Query:  FLRGTPCYPSDSSQKRKIESDFDSPI--SVTANLNPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSYQVPV
        FLR    Y   +    + ++    P    VTANL PLN+RKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSY+VPV
Subjt:  FLRGTPCYPSDSSQKRKIESDFDSPI--SVTANLNPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSYQVPV

A0A6P4C536 probable plastid-lipid-associated protein 4, chloroplastic9.2e-3092.96Show/hide
Query:  VTANLNPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSYQVPV
        VTANL PLN+RKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELR+SRGDKGNLFILKM+DPSY+VPV
Subjt:  VTANLNPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSYQVPV

SwissProt top hitse value%identityAlignment
Q0JD85 Fibrillin protein 5 homolog2.9e-0464.52Show/hide
Query:  GELEITYLDEELRISRGDKGNLFILKMIDPS
        G LEITY+DE LRI R DK N+F+L+  DPS
Subjt:  GELEITYLDEELRISRGDKGNLFILKMIDPS

Q6DBN2 Probable plastid-lipid-associated protein 5, chloroplastic1.2e-2155.77Show/hide
Query:  KIHFLRGTPCYPSDSSQKRKIESDFDSPI--SVTANLNPLNSRKVAVQFDTFKILGLIPVKAP-GRARGELEITYLDEELRISRGDKGNLFILKMIDPSY
        K  FLR    Y   +    K++     P   SVT +L PLNS+ VAV+   FKILG IPVKAP G ARGELEITY+DEELRISRG    LFILKM DP+Y
Subjt:  KIHFLRGTPCYPSDSSQKRKIESDFDSPI--SVTANLNPLNSRKVAVQFDTFKILGLIPVKAP-GRARGELEITYLDEELRISRGDKGNLFILKMIDPSY

Query:  QVPV
        ++P+
Subjt:  QVPV

Q941D3 Probable plastid-lipid-associated protein 8, chloroplastic2.2e-0437.31Show/hide
Query:  DSPISVTANLNPLNSRKVAVQFDTFKI-LGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILK
        D  +S+T  L  L+S  V V F+  +I +G +  K    +  +L ITY+DE+LR+  G KG+LF+ +
Subjt:  DSPISVTANLNPLNSRKVAVQFDTFKI-LGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILK

Q9LU85 Probable plastid-lipid-associated protein 4, chloroplastic2.0e-2658.25Show/hide
Query:  KIHFLRGTPCYPSDSSQKRKIESDFDSPI--SVTANLNPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSYQ
        K  FLR    Y S +    K+++    P   SVT ++ PLNS+KVAV+   FKILG IP+KAP  ARGELEITY+DEELR+SRGDKGNLFILKM DP+Y+
Subjt:  KIHFLRGTPCYPSDSSQKRKIESDFDSPI--SVTANLNPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSYQ

Query:  VPV
        +P+
Subjt:  VPV

Arabidopsis top hitse value%identityAlignment
AT3G26070.1 Plastid-lipid associated protein PAP / fibrillin family protein1.4e-2758.25Show/hide
Query:  KIHFLRGTPCYPSDSSQKRKIESDFDSPI--SVTANLNPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSYQ
        K  FLR    Y S +    K+++    P   SVT ++ PLNS+KVAV+   FKILG IP+KAP  ARGELEITY+DEELR+SRGDKGNLFILKM DP+Y+
Subjt:  KIHFLRGTPCYPSDSSQKRKIESDFDSPI--SVTANLNPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSYQ

Query:  VPV
        +P+
Subjt:  VPV

AT3G26080.1 plastid-lipid associated protein PAP / fibrillin family protein8.2e-2355.77Show/hide
Query:  KIHFLRGTPCYPSDSSQKRKIESDFDSPI--SVTANLNPLNSRKVAVQFDTFKILGLIPVKAP-GRARGELEITYLDEELRISRGDKGNLFILKMIDPSY
        K  FLR    Y   +    K++     P   SVT +L PLNS+ VAV+   FKILG IPVKAP G ARGELEITY+DEELRISRG    LFILKM DP+Y
Subjt:  KIHFLRGTPCYPSDSSQKRKIESDFDSPI--SVTANLNPLNSRKVAVQFDTFKILGLIPVKAP-GRARGELEITYLDEELRISRGDKGNLFILKMIDPSY

Query:  QVPV
        ++P+
Subjt:  QVPV

AT5G19940.1 Plastid-lipid associated protein PAP / fibrillin family protein1.6e-0537.31Show/hide
Query:  DSPISVTANLNPLNSRKVAVQFDTFKI-LGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILK
        D  +S+T  L  L+S  V V F+  +I +G +  K    +  +L ITY+DE+LR+  G KG+LF+ +
Subjt:  DSPISVTANLNPLNSRKVAVQFDTFKI-LGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGCAATTTAAACACTCTGATTTCACCATTCCTAATTCGAAGATTCATTTCTTGAGAGGTACACCATGCTACCCTTCGGATTCTTCTCAAAAAAGGAAGATTGAATCAGA
TTTTGATTCCCCTATCAGTGTCACAGCAAACTTGAATCCTTTAAATTCAAGAAAAGTAGCTGTTCAATTTGACACATTCAAAATTCTTGGCCTGATACCGGTGAAAGCAC
CTGGAAGAGCCCGCGGTGAACTGGAAATTACATATTTGGATGAAGAGTTGCGAATATCCAGAGGTGACAAAGGGAACCTCTTTATCTTGAAGATGATTGATCCTTCTTAT
CAAGTACCTGTGTAA
mRNA sequenceShow/hide mRNA sequence
CAGCAATTTAAACACTCTGATTTCACCATTCCTAATTCGAAGATTCATTTCTTGAGAGGTACACCATGCTACCCTTCGGATTCTTCTCAAAAAAGGAAGATTGAATCAGA
TTTTGATTCCCCTATCAGTGTCACAGCAAACTTGAATCCTTTAAATTCAAGAAAAGTAGCTGTTCAATTTGACACATTCAAAATTCTTGGCCTGATACCGGTGAAAGCAC
CTGGAAGAGCCCGCGGTGAACTGGAAATTACATATTTGGATGAAGAGTTGCGAATATCCAGAGGTGACAAAGGGAACCTCTTTATCTTGAAGATGATTGATCCTTCTTAT
CAAGTACCTGTGTAA
Protein sequenceShow/hide protein sequence
QQFKHSDFTIPNSKIHFLRGTPCYPSDSSQKRKIESDFDSPISVTANLNPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELRISRGDKGNLFILKMIDPSY
QVPV