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HG10019038 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019038
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCCHC-type domain-containing protein
Genome locationChr04:14640317..14646612
RNA-Seq ExpressionHG10019038
SyntenyHG10019038
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MCH84017.1 zinc CCHC-type-like protein [Trifolium medium]3.2e-1429.71Show/hide
Query:  MIGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCFTCGKFGHSLRECQQ--------SRSLNNNCHEYSEWLKA
        ++G  EE+D    +R TG F+RIR+ MD+  PL+ G KL + +GK++W   +YE+LP+FCF CG+ GH +R+C++         R L      +  WL+A
Subjt:  MIGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCFTCGKFGHSLRECQQ--------SRSLNNNCHEYSEWLKA

Query:  TRVKKEGRFLGEVGGEKRQVGEEMTEAFILPEDYSKIG---GKVKLLTKIIELWEGVKDEPILTESSNDNPSAAM
        + + K      EV   KR+         + P   +  G   G  K+  + ++  +   +  I  ++++ N + AM
Subjt:  TRVKKEGRFLGEVGGEKRQVGEEMTEAFILPEDYSKIG---GKVKLLTKIIELWEGVKDEPILTESSNDNPSAAM

TXG73180.1 hypothetical protein EZV62_001759 [Acer yangbiense]4.2e-1434.09Show/hide
Query:  IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEV-WCPIQYEKLPDFCFTCGKFGHSLRECQQSR----SLNNNCHEYSEWLKATRVK
        IG V E+  D    W G FMR+++ +D++ PL+   +L+ ++  E+    ++YE+LPDFC+ CG+ GH L+EC        +L+ +  +Y +WLKA  V+
Subjt:  IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEV-WCPIQYEKLPDFCFTCGKFGHSLRECQQSR----SLNNNCHEYSEWLKATRVK

Query:  KE-GRFLGEVGGEKRQVGEEMTEAFILPEDYS
        KE  RF  ++ G   +  +     F L  D S
Subjt:  KE-GRFLGEVGGEKRQVGEEMTEAFILPEDYS

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]3.3e-2753.06Show/hide
Query:  IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCFTCGKFGHSLRECQQSRSL--NNNCHEYSEWLKATRVKK
        +G+VEEI+ DG   W GPF+R+R+++DV+ PLR G KL+ ++GK++WCP++YEKLPDFC+ CGK GHS REC+Q   +   N+  +Y +WL+AT +KK
Subjt:  IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCFTCGKFGHSLRECQQSRSL--NNNCHEYSEWLKATRVKK

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]9.0e-1747.3Show/hide
Query:  IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCFTCGKFGHSLRECQQ
        +G VEE+D   +  W  PF+ +R++++V  PLR G K++T++GK++WCP++YE+LPDFC+ CG  GHS+RE ++
Subjt:  IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCFTCGKFGHSLRECQQ

XP_023918612.1 uncharacterized protein LOC112030159 [Quercus suber]9.3e-1429.35Show/hide
Query:  IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCFTCGKFGHSLRECQQSRSLNNNCHEYSEWLKA---TRVKKE
        IG V E+DC   +     F+RIR+++ +  P+R G  + + EG  V    QYE+L   CF+CGK GH  +EC  + S       Y EWLK     + K  
Subjt:  IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCFTCGKFGHSLRECQQSRSLNNNCHEYSEWLKA---TRVKKE

Query:  GRFLGEVGGEKRQVGEEMTEAFILPEDYSKIGGKVKLLTKIIELWEGVKDEPILTE-------SSNDNP--SAAMSHNIYDLHQ
        GR  G   G++    ++  +    P+ +S        L K+  +    K + ++TE        SN+ P    AM  +I ++ Q
Subjt:  GRFLGEVGGEKRQVGEEMTEAFILPEDYSKIGGKVKLLTKIIELWEGVKDEPILTE-------SSNDNP--SAAMSHNIYDLHQ

TrEMBL top hitse value%identityAlignment
A0A2N9E949 CCHC-type domain-containing protein1.6e-1439.58Show/hide
Query:  IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCFTCGKFGHSLREC----QQSRSLNNNCHEYSEWLKAT
        +G +EEID        G FMR+++++DV++PL    +++  + + +W  ++YEKLP FC+ CG  GHS REC    Q  +S + N +EY  WL+AT
Subjt:  IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCFTCGKFGHSLREC----QQSRSLNNNCHEYSEWLKAT

A0A2N9G3M9 CCHC-type domain-containing protein1.6e-1439.58Show/hide
Query:  IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCFTCGKFGHSLREC----QQSRSLNNNCHEYSEWLKAT
        +G +EEID        G FMR+++++DV++PL    +++  + + +W  ++YEKLP FC+ CG  GHS REC    Q  +S + N +EY  WL+AT
Subjt:  IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCFTCGKFGHSLREC----QQSRSLNNNCHEYSEWLKAT

A0A392M948 Zinc CCHC-type-like protein (Fragment)1.6e-1429.71Show/hide
Query:  MIGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCFTCGKFGHSLRECQQ--------SRSLNNNCHEYSEWLKA
        ++G  EE+D    +R TG F+RIR+ MD+  PL+ G KL + +GK++W   +YE+LP+FCF CG+ GH +R+C++         R L      +  WL+A
Subjt:  MIGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCFTCGKFGHSLRECQQ--------SRSLNNNCHEYSEWLKA

Query:  TRVKKEGRFLGEVGGEKRQVGEEMTEAFILPEDYSKIG---GKVKLLTKIIELWEGVKDEPILTESSNDNPSAAM
        + + K      EV   KR+         + P   +  G   G  K+  + ++  +   +  I  ++++ N + AM
Subjt:  TRVKKEGRFLGEVGGEKRQVGEEMTEAFILPEDYSKIG---GKVKLLTKIIELWEGVKDEPILTESSNDNPSAAM

A0A6J1D765 uncharacterized protein LOC1110179021.6e-2753.06Show/hide
Query:  IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCFTCGKFGHSLRECQQSRSL--NNNCHEYSEWLKATRVKK
        +G+VEEI+ DG   W GPF+R+R+++DV+ PLR G KL+ ++GK++WCP++YEKLPDFC+ CGK GHS REC+Q   +   N+  +Y +WL+AT +KK
Subjt:  IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCFTCGKFGHSLRECQQSRSL--NNNCHEYSEWLKATRVKK

A0A6J1DVS4 uncharacterized protein LOC1110235554.4e-1747.3Show/hide
Query:  IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCFTCGKFGHSLRECQQ
        +G VEE+D   +  W  PF+ +R++++V  PLR G K++T++GK++WCP++YE+LPDFC+ CG  GHS+RE ++
Subjt:  IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCFTCGKFGHSLRECQQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G42140.1 zinc ion binding;nucleic acid binding3.2e-0447.73Show/hide
Query:  RHGCKLRTNEGKEV-WCPIQYEKLPDFCFTCGKFGHSLRECQQS
        R G  L TN G++V     QYEKL +FC TCG   H   EC  S
Subjt:  RHGCKLRTNEGKEV-WCPIQYEKLPDFCFTCGKFGHSLRECQQS

AT5G36228.1 nucleic acid binding;zinc ion binding5.0e-0527.78Show/hide
Query:  IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCFTCGKFGHSLREC
        +G V  +D +  +     F+R++++MD T PLR   ++R    +      +YEKL   C  C +  H +  C
Subjt:  IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCFTCGKFGHSLREC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGGTAATGTTGAAGAGATTGATTGTGACGGCACTAGCAGATGGACGGGCCCTTTTATGCGAATTCGCATTCAAATGGATGTCACATTACCTCTTAGACATGGATG
CAAATTAAGAACGAATGAAGGAAAAGAAGTATGGTGTCCGATCCAATATGAAAAGCTTCCTGATTTTTGCTTCACATGTGGTAAATTTGGTCATTCTCTTAGAGAATGTC
AGCAATCAAGAAGTCTAAATAACAACTGTCACGAATACAGCGAATGGTTAAAGGCTACGCGGGTGAAGAAAGAAGGGAGATTTTTGGGCGAAGTTGGGGGAGAGAAGCGG
CAAGTCGGGGAAGAAATGACAGAAGCATTTATCCTCCCCGAGGATTATTCCAAAATCGGTGGCAAAGTTAAACTTCTCACAAAAATTATTGAACTCTGGGAAGGTGTGAA
AGATGAACCTATTCTGACCGAATCCAGCAATGACAACCCTAGCGCTGCCATGAGCCATAACATCTACGACCTTCACCAGGTTGCTCGAGCTAACTGCGTTCTGGATGAAA
CTCGAGGGGATCTGAATTCTATCCGAGCTAACTATGCCCGTACCCAACCCAAGCTTGACAAGGCTGAAATCCTCCTTTCCAATATTGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGATAGGTAATGTTGAAGAGATTGATTGTGACGGCACTAGCAGATGGACGGGCCCTTTTATGCGAATTCGCATTCAAATGGATGTCACATTACCTCTTAGACATGGATG
CAAATTAAGAACGAATGAAGGAAAAGAAGTATGGTGTCCGATCCAATATGAAAAGCTTCCTGATTTTTGCTTCACATGTGGTAAATTTGGTCATTCTCTTAGAGAATGTC
AGCAATCAAGAAGTCTAAATAACAACTGTCACGAATACAGCGAATGGTTAAAGGCTACGCGGGTGAAGAAAGAAGGGAGATTTTTGGGCGAAGTTGGGGGAGAGAAGCGG
CAAGTCGGGGAAGAAATGACAGAAGCATTTATCCTCCCCGAGGATTATTCCAAAATCGGTGGCAAAGTTAAACTTCTCACAAAAATTATTGAACTCTGGGAAGGTGTGAA
AGATGAACCTATTCTGACCGAATCCAGCAATGACAACCCTAGCGCTGCCATGAGCCATAACATCTACGACCTTCACCAGGTTGCTCGAGCTAACTGCGTTCTGGATGAAA
CTCGAGGGGATCTGAATTCTATCCGAGCTAACTATGCCCGTACCCAACCCAAGCTTGACAAGGCTGAAATCCTCCTTTCCAATATTGCCTAG
Protein sequenceShow/hide protein sequence
MIGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCFTCGKFGHSLRECQQSRSLNNNCHEYSEWLKATRVKKEGRFLGEVGGEKR
QVGEEMTEAFILPEDYSKIGGKVKLLTKIIELWEGVKDEPILTESSNDNPSAAMSHNIYDLHQVARANCVLDETRGDLNSIRANYARTQPKLDKAEILLSNIA