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HG10019039 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019039
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
Genome locationChr04:14659101..14660348
RNA-Seq ExpressionHG10019039
SyntenyHG10019039
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CCA66040.1 hypothetical protein [Beta vulgaris subsp. vulgaris]1.7e-0735.96Show/hide
Query:  IAAEALALLYGLKQAYEMGLTNIWVESDSQILVNRINHKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLARW-VSCNRE
        + AEA+A L+ ++ A+ +G   I +E D+ +++N + HKC   +P   I N+I    A  +  S++ +RR  N +AH LARW   CN E
Subjt:  IAAEALALLYGLKQAYEMGLTNIWVESDSQILVNRINHKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLARW-VSCNRE

GAU50209.1 hypothetical protein TSUD_408920 [Trifolium subterraneum]5.1e-0735.11Show/hide
Query:  VEVIAAEALALLYGLKQAYEMGLTNIWVESDSQILVNRINHKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLAR----WVSCNR
        V  +  EA ALL  +++A   GL  +  ESDS++L++ I+ KC  NS + +I+++I  +M+      + F+RR+ N +AH LAR    W + +R
Subjt:  VEVIAAEALALLYGLKQAYEMGLTNIWVESDSQILVNRINHKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLAR----WVSCNR

XP_010685083.1 PREDICTED: uncharacterized protein LOC104899564 [Beta vulgaris subsp. vulgaris]2.1e-0837.89Show/hide
Query:  ELNVEVIAAEALALLYGLKQAYEMGLTNIWVESDSQILVNRINHKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLARWVSCNREG
        E  +EVI AEALA+ +GL +A + G T++ +E D+  + +++  +  + S  G+IL++IH   ++   +S +F++R+ NG+AH LA+ +SCN EG
Subjt:  ELNVEVIAAEALALLYGLKQAYEMGLTNIWVESDSQILVNRINHKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLARWVSCNREG

XP_010695719.1 PREDICTED: uncharacterized protein LOC104908324 [Beta vulgaris subsp. vulgaris]6.0e-0838.04Show/hide
Query:  VEVIAAEALALLYGLKQAYEMGLTNIWVESDSQILVNRINHKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLARWVSCNREG
        +EV+ AEALA+ +GLK A E G T++ +E D+  + +++     +N+  G+IL++I    ++ ++ S +F++R+ NG+AH LA+ +SCN EG
Subjt:  VEVIAAEALALLYGLKQAYEMGLTNIWVESDSQILVNRINHKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLARWVSCNREG

XP_021770651.1 uncharacterized protein LOC110734814 [Chenopodium quinoa]3.0e-0739.08Show/hide
Query:  VIAAEALALLYGLKQAYEMGLTNIWVESDSQILVNRINHKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLARWVSCN
        V  AEA A++YGLK A  MG   + +ESD+  +VNR+NHK    SP+  ++++I       +  SI+ ++R  N +AH +ARW + N
Subjt:  VIAAEALALLYGLKQAYEMGLTNIWVESDSQILVNRINHKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLARWVSCN

TrEMBL top hitse value%identityAlignment
A0A2Z6MEW1 Uncharacterized protein5.5e-0734.38Show/hide
Query:  VEVIAAEALALLYGLKQAYEMGLTNIWVESDSQILVNRINHKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLAR----WVSCNREG
        +  +  E+ ALL  +++A   GL  +  ESDS++L+  I+ KC  NS + +I+++I   M+      + F+RR+ N +AH LAR    W S +R G
Subjt:  VEVIAAEALALLYGLKQAYEMGLTNIWVESDSQILVNRINHKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLAR----WVSCNREG

A0A2Z6N6J1 Uncharacterized protein4.2e-0734.04Show/hide
Query:  VEVIAAEALALLYGLKQAYEMGLTNIWVESDSQILVNRINHKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLAR----WVSCNR
        +  +  EA  LL  +++A   GL  +  ESDS++L++ I+ KC  NS + +I+++I  +M+      + F+RR+ N +AH LAR    W S +R
Subjt:  VEVIAAEALALLYGLKQAYEMGLTNIWVESDSQILVNRINHKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLAR----WVSCNR

A0A2Z6NYJ3 Uncharacterized protein3.2e-0736.96Show/hide
Query:  VIAAEALALLYGLKQAYEMGLTNIWVESDSQILVNRINHKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLAR----WVSCNR
        ++  EA ALL+ +K+A   G   +  ESDS++LV+ I+ +   NS +  I+N+I  +M+      + FIRR+ N +AH LAR    W S +R
Subjt:  VIAAEALALLYGLKQAYEMGLTNIWVESDSQILVNRINHKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLAR----WVSCNR

A0A2Z6PS44 RNase H domain-containing protein2.5e-0735.11Show/hide
Query:  VEVIAAEALALLYGLKQAYEMGLTNIWVESDSQILVNRINHKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLAR----WVSCNR
        V  +  EA ALL  +++A   GL  +  ESDS++L++ I+ KC  NS + +I+++I  +M+      + F+RR+ N +AH LAR    W + +R
Subjt:  VEVIAAEALALLYGLKQAYEMGLTNIWVESDSQILVNRINHKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLAR----WVSCNR

F4NCI7 Reverse transcriptase domain-containing protein8.5e-0835.96Show/hide
Query:  IAAEALALLYGLKQAYEMGLTNIWVESDSQILVNRINHKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLARW-VSCNRE
        + AEA+A L+ ++ A+ +G   I +E D+ +++N + HKC   +P   I N+I    A  +  S++ +RR  N +AH LARW   CN E
Subjt:  IAAEALALLYGLKQAYEMGLTNIWVESDSQILVNRINHKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLARW-VSCNRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein2.4e-0737.04Show/hide
Query:  AEALALLYGLKQAYEMGLTNIWVESDSQILVNRINHKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLARWV
        AEAL  L+ L+  +  GL  +W ESDS+ LV  IN+    +S  G ++ +I  WM +    S+ F+ R+ N  A  LA  V
Subjt:  AEALALLYGLKQAYEMGLTNIWVESDSQILVNRINHKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLARWV

AT3G09510.1 Ribonuclease H-like superfamily protein8.4e-0838.37Show/hide
Query:  IAAEALALLYGLKQAYEMGLTNIWVESDSQILVNRIN----HKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLARW
        + AE  ALL  L+Q +  G T +++E D Q L+N IN    H  L N      L +I  W  +  +I   FIRRK N +AH LA++
Subjt:  IAAEALALLYGLKQAYEMGLTNIWVESDSQILVNRIN----HKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLARW

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.3e-0430.86Show/hide
Query:  IAAEALALLYGLKQAYEMGLTNIWVESDSQILVNRINHKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLAR
        + AEA+AL   L+ A  +G+T + + SDSQ L+  I  +      YG I + ++  +   + +S +F+ R  N +A  LA+
Subjt:  IAAEALALLYGLKQAYEMGLTNIWVESDSQILVNRINHKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGIAHCLAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGTATATCAATCTCCTTGGATCCCTCGTCTGTATAATTTCTTGCCTATTACACTGCCCGAACAGGAGAAAGAAGCGATGAAGGAGTTAAATGTTGAAGTTATTGC
TGCTGAAGCTTTAGCCTTATTATATGGACTTAAACAGGCGTATGAGATGGGATTAACTAATATTTGGGTTGAATCTGACTCCCAAATTCTAGTTAATCGTATTAATCATA
AATGCCTGCAGAACTCTCCTTATGGTGCTATTTTGAATGAAATCCATGACTGGATGGCTCGGACCAACACTATTAGCATTGCTTTTATTCGCAGAAAAATCAATGGGATC
GCACATTGTTTAGCAAGATGGGTCTCTTGTAATAGGGAGGGGGATGCTGGAACATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGTATATCAATCTCCTTGGATCCCTCGTCTGTATAATTTCTTGCCTATTACACTGCCCGAACAGGAGAAAGAAGCGATGAAGGAGTTAAATGTTGAAGTTATTGC
TGCTGAAGCTTTAGCCTTATTATATGGACTTAAACAGGCGTATGAGATGGGATTAACTAATATTTGGGTTGAATCTGACTCCCAAATTCTAGTTAATCGTATTAATCATA
AATGCCTGCAGAACTCTCCTTATGGTGCTATTTTGAATGAAATCCATGACTGGATGGCTCGGACCAACACTATTAGCATTGCTTTTATTCGCAGAAAAATCAATGGGATC
GCACATTGTTTAGCAAGATGGGTCTCTTGTAATAGGGAGGGGGATGCTGGAACATAA
Protein sequenceShow/hide protein sequence
MLVYQSPWIPRLYNFLPITLPEQEKEAMKELNVEVIAAEALALLYGLKQAYEMGLTNIWVESDSQILVNRINHKCLQNSPYGAILNEIHDWMARTNTISIAFIRRKINGI
AHCLARWVSCNREGDAGT