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HG10019045 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019045
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr04:14945823..14946200
RNA-Seq ExpressionHG10019045
SyntenyHG10019045
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037436.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.6e-1938.89Show/hide
Query:  KYNQTKLDDFPCN-GKYSSKKTPWRAIIKGVDWFKAQISWKVNNNEQISFWRDNWNKKSSFSKSYHKLNALFSNIDLSIKDAWNICTSDRDFHPRRPLFQ
        KY    + DFP   GKYSS K PWR IIK + WF+   SW++ + E +SFW  NW    S S +Y +L  L    + +I++ W+  T+D + HPRRPL  
Subjt:  KYNQTKLDDFPCN-GKYSSKKTPWRAIIKGVDWFKAQISWKVNNNEQISFWRDNWNKKSSFSKSYHKLNALFSNIDLSIKDAWNICTSDRDFHPRRPLFQ

Query:  RELRSWNEAKFCFSIFENDKGPETLI
        RE+  W   K    I   + G   +I
Subjt:  RELRSWNEAKFCFSIFENDKGPETLI

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.8e-2042.98Show/hide
Query:  KYNQTKLDDFPCNGKYSSKKTPWRAIIKGVDWFKAQISWKVNNNEQISFWRDNWNKKSSFSKSYHKLNALFSNIDLSIKDAWNICTSDRDFHPRRPLFQR
        KY+Q K+  FP  GKYSS  +PW+A+   + WF   I WKVN+ E ISFW DNWN  S  S    +L AL +N   S+KD WN    D + H  RPL   
Subjt:  KYNQTKLDDFPCNGKYSSKKTPWRAIIKGVDWFKAQISWKVNNNEQISFWRDNWNKKSSFSKSYHKLNALFSNIDLSIKDAWNICTSDRDFHPRRPLFQR

Query:  ELRSWNEAKFCFSIFENDKGP
        E   W+  K        D+GP
Subjt:  ELRSWNEAKFCFSIFENDKGP

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.9e-2142.98Show/hide
Query:  KYNQTKLDDFPCNGKYSSKKTPWRAIIKGVDWFKAQISWKVNNNEQISFWRDNWNKKSSFSKSYHKLNALFSNIDLSIKDAWNICTSDRDFHPRRPLFQR
        KY+Q K+  FP  GKYSS  +PW+A+   + WF   I WKVN+ E ISFW DNWN  S  S +  +L AL +N   S+KD WN    D + H  RPL   
Subjt:  KYNQTKLDDFPCNGKYSSKKTPWRAIIKGVDWFKAQISWKVNNNEQISFWRDNWNKKSSFSKSYHKLNALFSNIDLSIKDAWNICTSDRDFHPRRPLFQR

Query:  ELRSWNEAKFCFSIFENDKGP
        E   W+  K        D+GP
Subjt:  ELRSWNEAKFCFSIFENDKGP

KAA0055411.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.1e-1945.05Show/hide
Query:  PCNGKYSSKKTPWRAIIKGVDWFKAQISWKVNNNEQISFWRDNWNKKSSFSKSYHKLNALFSNIDLSIKDAWNICTSDRDFHPRRPLFQRELRSWNEAKF
        P  GK+SS K PWRA+   V WF   ISWKVN+   ISFW DNWN KS  S S  +L AL +N + S+ D WN   +D D H  RPL + E + W++ K 
Subjt:  PCNGKYSSKKTPWRAIIKGVDWFKAQISWKVNNNEQISFWRDNWNKKSSFSKSYHKLNALFSNIDLSIKDAWNICTSDRDFHPRRPLFQRELRSWNEAKF

Query:  CFSIFENDKGP
           +  +++GP
Subjt:  CFSIFENDKGP

KAA0056929.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.0e-2140.98Show/hide
Query:  KYNQTKLDDFPCNGKYSSKKTPWRAIIKGVDWFKAQISWKVNNNEQISFWRDNWNKKSSFSKSYHKLNALFSNIDLSIKDAWNICTSDRDFHPRRPLFQR
        KYNQ  + DFP  G + S K+PWR II+G DWF   I+WK+NN E +SFW   W++KS  +    +L AL +    S+KD W   +SD +F PRRP+   
Subjt:  KYNQTKLDDFPCNGKYSSKKTPWRAIIKGVDWFKAQISWKVNNNEQISFWRDNWNKKSSFSKSYHKLNALFSNIDLSIKDAWNICTSDRDFHPRRPLFQR

Query:  ELRSWNEAKFCFSIFENDKGPE
        E+  W+  +  FS  +  +G +
Subjt:  ELRSWNEAKFCFSIFENDKGPE

TrEMBL top hitse value%identityAlignment
A0A5A7T5L3 LINE-1 retrotransposable element ORF2 protein4.7e-1938.89Show/hide
Query:  KYNQTKLDDFPCN-GKYSSKKTPWRAIIKGVDWFKAQISWKVNNNEQISFWRDNWNKKSSFSKSYHKLNALFSNIDLSIKDAWNICTSDRDFHPRRPLFQ
        KY    + DFP   GKYSS K PWR IIK + WF+   SW++ + E +SFW  NW    S S +Y +L  L    + +I++ W+  T+D + HPRRPL  
Subjt:  KYNQTKLDDFPCN-GKYSSKKTPWRAIIKGVDWFKAQISWKVNNNEQISFWRDNWNKKSSFSKSYHKLNALFSNIDLSIKDAWNICTSDRDFHPRRPLFQ

Query:  RELRSWNEAKFCFSIFENDKGPETLI
        RE+  W   K    I   + G   +I
Subjt:  RELRSWNEAKFCFSIFENDKGPETLI

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein8.5e-2142.98Show/hide
Query:  KYNQTKLDDFPCNGKYSSKKTPWRAIIKGVDWFKAQISWKVNNNEQISFWRDNWNKKSSFSKSYHKLNALFSNIDLSIKDAWNICTSDRDFHPRRPLFQR
        KY+Q K+  FP  GKYSS  +PW+A+   + WF   I WKVN+ E ISFW DNWN  S  S    +L AL +N   S+KD WN    D + H  RPL   
Subjt:  KYNQTKLDDFPCNGKYSSKKTPWRAIIKGVDWFKAQISWKVNNNEQISFWRDNWNKKSSFSKSYHKLNALFSNIDLSIKDAWNICTSDRDFHPRRPLFQR

Query:  ELRSWNEAKFCFSIFENDKGP
        E   W+  K        D+GP
Subjt:  ELRSWNEAKFCFSIFENDKGP

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein3.8e-2142.98Show/hide
Query:  KYNQTKLDDFPCNGKYSSKKTPWRAIIKGVDWFKAQISWKVNNNEQISFWRDNWNKKSSFSKSYHKLNALFSNIDLSIKDAWNICTSDRDFHPRRPLFQR
        KY+Q K+  FP  GKYSS  +PW+A+   + WF   I WKVN+ E ISFW DNWN  S  S +  +L AL +N   S+KD WN    D + H  RPL   
Subjt:  KYNQTKLDDFPCNGKYSSKKTPWRAIIKGVDWFKAQISWKVNNNEQISFWRDNWNKKSSFSKSYHKLNALFSNIDLSIKDAWNICTSDRDFHPRRPLFQR

Query:  ELRSWNEAKFCFSIFENDKGP
        E   W+  K        D+GP
Subjt:  ELRSWNEAKFCFSIFENDKGP

A0A5A7UPD1 LINE-1 retrotransposable element ORF2 protein5.5e-2045.05Show/hide
Query:  PCNGKYSSKKTPWRAIIKGVDWFKAQISWKVNNNEQISFWRDNWNKKSSFSKSYHKLNALFSNIDLSIKDAWNICTSDRDFHPRRPLFQRELRSWNEAKF
        P  GK+SS K PWRA+   V WF   ISWKVN+   ISFW DNWN KS  S S  +L AL +N + S+ D WN   +D D H  RPL + E + W++ K 
Subjt:  PCNGKYSSKKTPWRAIIKGVDWFKAQISWKVNNNEQISFWRDNWNKKSSFSKSYHKLNALFSNIDLSIKDAWNICTSDRDFHPRRPLFQRELRSWNEAKF

Query:  CFSIFENDKGP
           +  +++GP
Subjt:  CFSIFENDKGP

A0A5D3DS76 LINE-1 retrotransposable element ORF2 protein2.9e-2140.98Show/hide
Query:  KYNQTKLDDFPCNGKYSSKKTPWRAIIKGVDWFKAQISWKVNNNEQISFWRDNWNKKSSFSKSYHKLNALFSNIDLSIKDAWNICTSDRDFHPRRPLFQR
        KYNQ  + DFP  G + S K+PWR II+G DWF   I+WK+NN E +SFW   W++KS  +    +L AL +    S+KD W   +SD +F PRRP+   
Subjt:  KYNQTKLDDFPCNGKYSSKKTPWRAIIKGVDWFKAQISWKVNNNEQISFWRDNWNKKSSFSKSYHKLNALFSNIDLSIKDAWNICTSDRDFHPRRPLFQR

Query:  ELRSWNEAKFCFSIFENDKGPE
        E+  W+  +  FS  +  +G +
Subjt:  ELRSWNEAKFCFSIFENDKGPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGTACAATCAGACCAAACTTGACGACTTCCCCTGTAATGGTAAATATAGCAGTAAAAAAACTCCTTGGCGAGCGATCATTAAAGGGGTCGATTGGTTTAAAGCCCAAAT
CAGTTGGAAGGTAAATAACAATGAACAAATATCATTTTGGAGAGACAATTGGAACAAAAAGAGCTCGTTTTCAAAGAGCTACCATAAACTAAATGCACTTTTTAGTAATA
TAGATTTATCAATTAAAGATGCTTGGAACATTTGTACATCTGATAGGGATTTTCATCCTCGCAGACCCTTGTTTCAAAGAGAATTAAGAAGTTGGAATGAAGCCAAGTTT
TGCTTTTCAATCTTCGAAAACGATAAAGGTCCTGAGACCCTAATCTAG
mRNA sequenceShow/hide mRNA sequence
AAGTACAATCAGACCAAACTTGACGACTTCCCCTGTAATGGTAAATATAGCAGTAAAAAAACTCCTTGGCGAGCGATCATTAAAGGGGTCGATTGGTTTAAAGCCCAAAT
CAGTTGGAAGGTAAATAACAATGAACAAATATCATTTTGGAGAGACAATTGGAACAAAAAGAGCTCGTTTTCAAAGAGCTACCATAAACTAAATGCACTTTTTAGTAATA
TAGATTTATCAATTAAAGATGCTTGGAACATTTGTACATCTGATAGGGATTTTCATCCTCGCAGACCCTTGTTTCAAAGAGAATTAAGAAGTTGGAATGAAGCCAAGTTT
TGCTTTTCAATCTTCGAAAACGATAAAGGTCCTGAGACCCTAATCTAG
Protein sequenceShow/hide protein sequence
KYNQTKLDDFPCNGKYSSKKTPWRAIIKGVDWFKAQISWKVNNNEQISFWRDNWNKKSSFSKSYHKLNALFSNIDLSIKDAWNICTSDRDFHPRRPLFQRELRSWNEAKF
CFSIFENDKGPETLI