; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10019054 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019054
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionReverse transcriptase
Genome locationChr04:15191867..15198526
RNA-Seq ExpressionHG10019054
SyntenyHG10019054
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049769.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]9.5e-2757.02Show/hide
Query:  WTESDEFVAVVSSVWVQHQRDCPWEEIRKVLFSMKNGKSSSSNGFSVGFFKFAWAVVGDYFYAVVGHFFDSFYLPRDVNVTAITLIPKRAGAERLVDLRP
        W  S + VA ++++ +   R    EE+R+VLFSM +GK+  S+GFSVGFFK AW VVG+ F   V HFF++ YLP  VN TAITLIPK  GA+RL D RP
Subjt:  WTESDEFVAVVSSVWVQHQRDCPWEEIRKVLFSMKNGKSSSSNGFSVGFFKFAWAVVGDYFYAVVGHFFDSFYLPRDVNVTAITLIPKRAGAERLVDLRP

Query:  TLCCNVVYKCISKLLSNRLHV
          CCNV+YKCISK+L +RLHV
Subjt:  TLCCNVVYKCISKLLSNRLHV
KAA0057642.1 reverse transcriptase [Cucumis melo var. makuwa]8.1e-2663.92Show/hide
Query:  EEIRKVLFSMKNGKSSSSNGFSVGFFKFAWAVVGDYFYAVVGHFFDSFYLPRDVNVTAITLIPKRAGAERLVDLRPTLCCNVVYKCISKLLSNRLHV
        EE+R+VLFSM +GK+   +GFSVGFFK AW+V+G+ F   V HFF+++YLP  VN TAITLIPK  GAERL D RP  CCNV+YKCISK+L++RL V
Subjt:  EEIRKVLFSMKNGKSSSSNGFSVGFFKFAWAVVGDYFYAVVGHFFDSFYLPRDVNVTAITLIPKRAGAERLVDLRPTLCCNVVYKCISKLLSNRLHV
TYK12108.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]9.5e-2757.02Show/hide
Query:  WTESDEFVAVVSSVWVQHQRDCPWEEIRKVLFSMKNGKSSSSNGFSVGFFKFAWAVVGDYFYAVVGHFFDSFYLPRDVNVTAITLIPKRAGAERLVDLRP
        W  S + VA ++++ +   R    EE+R+VLFSM +GK+  S+GFSVGFFK AW VVG+ F   V HFF++ YLP  VN TAITLIPK  GA+RL D RP
Subjt:  WTESDEFVAVVSSVWVQHQRDCPWEEIRKVLFSMKNGKSSSSNGFSVGFFKFAWAVVGDYFYAVVGHFFDSFYLPRDVNVTAITLIPKRAGAERLVDLRP

Query:  TLCCNVVYKCISKLLSNRLHV
          CCNV+YKCISK+L +RLHV
Subjt:  TLCCNVVYKCISKLLSNRLHV
TYK19523.1 reverse transcriptase [Cucumis melo var. makuwa]8.1e-2663.92Show/hide
Query:  EEIRKVLFSMKNGKSSSSNGFSVGFFKFAWAVVGDYFYAVVGHFFDSFYLPRDVNVTAITLIPKRAGAERLVDLRPTLCCNVVYKCISKLLSNRLHV
        EE+R+VLFSM +GK+   +GFSVGFFK AW+V+G+ F   V HFF+++YLP  VN TAITLIPK  GAERL D RP  CCNV+YKCISK+L++RL V
Subjt:  EEIRKVLFSMKNGKSSSSNGFSVGFFKFAWAVVGDYFYAVVGHFFDSFYLPRDVNVTAITLIPKRAGAERLVDLRPTLCCNVVYKCISKLLSNRLHV
XP_008452126.1 PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]8.1e-2663.92Show/hide
Query:  EEIRKVLFSMKNGKSSSSNGFSVGFFKFAWAVVGDYFYAVVGHFFDSFYLPRDVNVTAITLIPKRAGAERLVDLRPTLCCNVVYKCISKLLSNRLHV
        EE+R+VLFSM +GK+   +GFSVGFFK AW+V+G+ F   V HFF+++YLP  VN TAITLIPK  GAERL D RP  CCNV+YKCISK+L++RL V
Subjt:  EEIRKVLFSMKNGKSSSSNGFSVGFFKFAWAVVGDYFYAVVGHFFDSFYLPRDVNVTAITLIPKRAGAERLVDLRPTLCCNVVYKCISKLLSNRLHV
TrEMBL top hitse value%identityAlignment
A0A1S3BSI8 uncharacterized protein LOC1034932253.9e-2663.92Show/hide
Query:  EEIRKVLFSMKNGKSSSSNGFSVGFFKFAWAVVGDYFYAVVGHFFDSFYLPRDVNVTAITLIPKRAGAERLVDLRPTLCCNVVYKCISKLLSNRLHV
        EE+R+VLFSM +GK+   +GFSVGFFK AW+V+G+ F   V HFF+++YLP  VN TAITLIPK  GAERL D RP  CCNV+YKCISK+L++RL V
Subjt:  EEIRKVLFSMKNGKSSSSNGFSVGFFKFAWAVVGDYFYAVVGHFFDSFYLPRDVNVTAITLIPKRAGAERLVDLRPTLCCNVVYKCISKLLSNRLHV
A0A5A7U8G1 Non-LTR retroelement reverse transcriptase-like protein4.6e-2757.02Show/hide
Query:  WTESDEFVAVVSSVWVQHQRDCPWEEIRKVLFSMKNGKSSSSNGFSVGFFKFAWAVVGDYFYAVVGHFFDSFYLPRDVNVTAITLIPKRAGAERLVDLRP
        W  S + VA ++++ +   R    EE+R+VLFSM +GK+  S+GFSVGFFK AW VVG+ F   V HFF++ YLP  VN TAITLIPK  GA+RL D RP
Subjt:  WTESDEFVAVVSSVWVQHQRDCPWEEIRKVLFSMKNGKSSSSNGFSVGFFKFAWAVVGDYFYAVVGHFFDSFYLPRDVNVTAITLIPKRAGAERLVDLRP

Query:  TLCCNVVYKCISKLLSNRLHV
          CCNV+YKCISK+L +RLHV
Subjt:  TLCCNVVYKCISKLLSNRLHV
A0A5A7UP65 Reverse transcriptase3.9e-2663.92Show/hide
Query:  EEIRKVLFSMKNGKSSSSNGFSVGFFKFAWAVVGDYFYAVVGHFFDSFYLPRDVNVTAITLIPKRAGAERLVDLRPTLCCNVVYKCISKLLSNRLHV
        EE+R+VLFSM +GK+   +GFSVGFFK AW+V+G+ F   V HFF+++YLP  VN TAITLIPK  GAERL D RP  CCNV+YKCISK+L++RL V
Subjt:  EEIRKVLFSMKNGKSSSSNGFSVGFFKFAWAVVGDYFYAVVGHFFDSFYLPRDVNVTAITLIPKRAGAERLVDLRPTLCCNVVYKCISKLLSNRLHV
A0A5D3CLU1 Non-LTR retroelement reverse transcriptase-like protein4.6e-2757.02Show/hide
Query:  WTESDEFVAVVSSVWVQHQRDCPWEEIRKVLFSMKNGKSSSSNGFSVGFFKFAWAVVGDYFYAVVGHFFDSFYLPRDVNVTAITLIPKRAGAERLVDLRP
        W  S + VA ++++ +   R    EE+R+VLFSM +GK+  S+GFSVGFFK AW VVG+ F   V HFF++ YLP  VN TAITLIPK  GA+RL D RP
Subjt:  WTESDEFVAVVSSVWVQHQRDCPWEEIRKVLFSMKNGKSSSSNGFSVGFFKFAWAVVGDYFYAVVGHFFDSFYLPRDVNVTAITLIPKRAGAERLVDLRP

Query:  TLCCNVVYKCISKLLSNRLHV
          CCNV+YKCISK+L +RLHV
Subjt:  TLCCNVVYKCISKLLSNRLHV
A0A5D3D7P6 Reverse transcriptase3.9e-2663.92Show/hide
Query:  EEIRKVLFSMKNGKSSSSNGFSVGFFKFAWAVVGDYFYAVVGHFFDSFYLPRDVNVTAITLIPKRAGAERLVDLRPTLCCNVVYKCISKLLSNRLHV
        EE+R+VLFSM +GK+   +GFSVGFFK AW+V+G+ F   V HFF+++YLP  VN TAITLIPK  GAERL D RP  CCNV+YKCISK+L++RL V
Subjt:  EEIRKVLFSMKNGKSSSSNGFSVGFFKFAWAVVGDYFYAVVGHFFDSFYLPRDVNVTAITLIPKRAGAERLVDLRPTLCCNVVYKCISKLLSNRLHV
SwissProt top hitse value%identityAlignment
P14381 Transposon TX1 uncharacterized 149 kDa protein2.8e-0527.88Show/hide
Query:  EEIRKVLFSMKNGKSSSSNGFSVGFFKFAWAVVGDYFYAVVGHFFDSFYLPRDVNVTAITLIPKRAGAERLVDLRPTLCCNVVYKCISKLLSNRLHVVGV
        +E+ + L  M + KS   +G ++ FF+F W  +G  F+ V+   F    LP       ++L+PK+     + + RP    +  YK ++K +S RL  V  
Subjt:  EEIRKVLFSMKNGKSSSSNGFSVGFFKFAWAVVGDYFYAVVGHFFDSFYLPRDVNVTAITLIPKRAGAERLVDLRPTLCCNVVYKCISKLLSNRLHVVGV

Query:  DVLN
        +V++
Subjt:  DVLN
Arabidopsis top hitse value%identityAlignment
AT1G43760.1 DNAse I-like superfamily protein2.7e-1142.05Show/hide
Query:  EEIRKVLFSMKNGKSSSSNGFSVGFFKFAWAVVGDYFYAVVGHFFDSFYLPRDVNVTAITLIPKRAGAERLVDLRPTLCCNVVYKCIS
        +EI   +F+M   K+   + F+  FF  +W VV D   A V  FF + +L +  N TAITLIPK  G ++L   RP  CC VVYK I+
Subjt:  EEIRKVLFSMKNGKSSSSNGFSVGFFKFAWAVVGDYFYAVVGHFFDSFYLPRDVNVTAITLIPKRAGAERLVDLRPTLCCNVVYKCIS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTGGTTTTCCTTCTGATCTGTCTCGGAAAAAGATGCATGATGAATTGGTAAAGGTGTCTGAGGGTGATCCTAATGAAATGGCGGCAGCTAAGGCCAAGGTTCTATG
GTGGATGGAGGAAACTCACCTTGTAGCGGTGGAAGCGAGGAAGAAGATGTTGGTTACCCTAGAGCCGAATACGGATTGGTGTGAGAACGAACCGAGTGGGTTGTTTGAAC
CAGTAGGAGGCGTGTTGGGGCTAAAGTCAGTTGGGCTGGTGAATGATGTTTTGAGGGTGGCTGGCGATTTGGGCTCCGAAGGGTTGCATCCTAGTTTCTATTTGGGTGTG
GGGGTGAACCGGGGTCAGGTGTTGGGTGGGGCTAACATGGGTGGTTCTCAGGTGAATGAAGGTTCATTCGTTGGTCGGTCCGGTTTGGTTGGTCGATGGGTTGGTGGGAC
GGACCAGAGCAGTTTAAGGCTAGATTCAGAGGCGGGTCCTTCTTCAGTGGGTAGGGTCGGGGTGGTTAATGAAGGTGTAGCCAAAGGGAAGTCGTCCTTGACATCCTTGT
TCGGTTCTTCTACCTCAACGGAGCTGGCATATAGTTCCCCAGTGGTGGAAAGGAACAAGTTGGTTGTGGAAGCATCGGAGAAAGTGTTGGAAAAGGGCATTGGGATCTTA
CTGAACAAACTTGTGGGAAGATGGAGACCCCGACGATCACGTTCTTGGAGGATGGGCTCATTATTTTTCAGTTTCGCCGTGTTGAGTCAAGAGACTGGGTTCTTGCTAAT
GGGTCGTGGCATCTGGGTGGCAAGCCCATTTTACTCCATTGCTAAACTCGAGGAGCCTGGCATTGTGATGGGTGATTTTAACTCTATTCGTAACTCGTCGGAAGCTTTTG
GTGGGAATCCTAGTGGTAGTGATATGACTATGGGTAGGGTGTTTCCTTGGGGAATCTCTAACCATATTCCCCTTCTTCTTTCATCAGGGGATGGGTCGAGCCATAGACGG
TTGGCTTTTCGCTTCTTTAATCATTGGACTGAGTCTGATGAGTTTGTGGCTGTTGTTTCTTCTGTTTGGGTCCAACATCAGAGGGATTGCCCTTGGGAAGAGATTCGTAA
AGTGTTGTTCTCTATGAAGAATGGCAAATCCTCGAGCTCTAATGGTTTCTCTGTGGGGTTCTTTAAGTTTGCTTGGGCAGTGGTTGGTGATTATTTTTATGCTGTAGTGG
GTCATTTCTTTGATTCTTTTTATCTCCCTCGTGATGTGAATGTTACTGCTATCACGCTTATTCCAAAGCGTGCTGGGGCGGAGAGGTTGGTTGATTTGAGGCCTACTTTG
TGCTGCAATGTTGTTTATAAATGTATCTCGAAGTTGTTATCGAACAGATTGCATGTTGTTGGGGTTGATGTCCTAAATCTCGTGGTCTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTGGTTTTCCTTCTGATCTGTCTCGGAAAAAGATGCATGATGAATTGGTAAAGGTGTCTGAGGGTGATCCTAATGAAATGGCGGCAGCTAAGGCCAAGGTTCTATG
GTGGATGGAGGAAACTCACCTTGTAGCGGTGGAAGCGAGGAAGAAGATGTTGGTTACCCTAGAGCCGAATACGGATTGGTGTGAGAACGAACCGAGTGGGTTGTTTGAAC
CAGTAGGAGGCGTGTTGGGGCTAAAGTCAGTTGGGCTGGTGAATGATGTTTTGAGGGTGGCTGGCGATTTGGGCTCCGAAGGGTTGCATCCTAGTTTCTATTTGGGTGTG
GGGGTGAACCGGGGTCAGGTGTTGGGTGGGGCTAACATGGGTGGTTCTCAGGTGAATGAAGGTTCATTCGTTGGTCGGTCCGGTTTGGTTGGTCGATGGGTTGGTGGGAC
GGACCAGAGCAGTTTAAGGCTAGATTCAGAGGCGGGTCCTTCTTCAGTGGGTAGGGTCGGGGTGGTTAATGAAGGTGTAGCCAAAGGGAAGTCGTCCTTGACATCCTTGT
TCGGTTCTTCTACCTCAACGGAGCTGGCATATAGTTCCCCAGTGGTGGAAAGGAACAAGTTGGTTGTGGAAGCATCGGAGAAAGTGTTGGAAAAGGGCATTGGGATCTTA
CTGAACAAACTTGTGGGAAGATGGAGACCCCGACGATCACGTTCTTGGAGGATGGGCTCATTATTTTTCAGTTTCGCCGTGTTGAGTCAAGAGACTGGGTTCTTGCTAAT
GGGTCGTGGCATCTGGGTGGCAAGCCCATTTTACTCCATTGCTAAACTCGAGGAGCCTGGCATTGTGATGGGTGATTTTAACTCTATTCGTAACTCGTCGGAAGCTTTTG
GTGGGAATCCTAGTGGTAGTGATATGACTATGGGTAGGGTGTTTCCTTGGGGAATCTCTAACCATATTCCCCTTCTTCTTTCATCAGGGGATGGGTCGAGCCATAGACGG
TTGGCTTTTCGCTTCTTTAATCATTGGACTGAGTCTGATGAGTTTGTGGCTGTTGTTTCTTCTGTTTGGGTCCAACATCAGAGGGATTGCCCTTGGGAAGAGATTCGTAA
AGTGTTGTTCTCTATGAAGAATGGCAAATCCTCGAGCTCTAATGGTTTCTCTGTGGGGTTCTTTAAGTTTGCTTGGGCAGTGGTTGGTGATTATTTTTATGCTGTAGTGG
GTCATTTCTTTGATTCTTTTTATCTCCCTCGTGATGTGAATGTTACTGCTATCACGCTTATTCCAAAGCGTGCTGGGGCGGAGAGGTTGGTTGATTTGAGGCCTACTTTG
TGCTGCAATGTTGTTTATAAATGTATCTCGAAGTTGTTATCGAACAGATTGCATGTTGTTGGGGTTGATGTCCTAAATCTCGTGGTCTTGTAA
Protein sequenceShow/hide protein sequence
MPGFPSDLSRKKMHDELVKVSEGDPNEMAAAKAKVLWWMEETHLVAVEARKKMLVTLEPNTDWCENEPSGLFEPVGGVLGLKSVGLVNDVLRVAGDLGSEGLHPSFYLGV
GVNRGQVLGGANMGGSQVNEGSFVGRSGLVGRWVGGTDQSSLRLDSEAGPSSVGRVGVVNEGVAKGKSSLTSLFGSSTSTELAYSSPVVERNKLVVEASEKVLEKGIGIL
LNKLVGRWRPRRSRSWRMGSLFFSFAVLSQETGFLLMGRGIWVASPFYSIAKLEEPGIVMGDFNSIRNSSEAFGGNPSGSDMTMGRVFPWGISNHIPLLLSSGDGSSHRR
LAFRFFNHWTESDEFVAVVSSVWVQHQRDCPWEEIRKVLFSMKNGKSSSSNGFSVGFFKFAWAVVGDYFYAVVGHFFDSFYLPRDVNVTAITLIPKRAGAERLVDLRPTL
CCNVVYKCISKLLSNRLHVVGVDVLNLVVL