CuGenDBv2

Gene ID	HG10019076
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	general transcription factor 3C polypeptide 5-like
Genome location	Chr04:15919907..15928843
RNA-Seq Expression	HG10019076
Synteny	HG10019076
Gene Ontology terms	GO:0006384 - transcription initiation from RNA polymerase III promoter (biological process) GO:0000127 - transcription factor TFIIIC complex (cellular component)
InterPro domains	IPR040454 - Transcription factor IIIC subunit Tfc1/Sfc1 IPR041499 - Transcription factor IIIC subunit Tfc1/Sfc1, triple barrel domain IPR042536 - TFIIIC, subcomplex tauA subunit Sfc1, triple barrel domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6588837.1 General transcription factor 3C polypeptide 5, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-63

67.55

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Query:  MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKIC-----------------
        MGKLKDNTISG LPTAQ+FAVHYPGYP SKRRA+E+LGG QSILKVR LQSNKLELRFRPEDPYSHPT+GELRPCSCFLLKIC                 
Subjt:  MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKIC-----------------

Query:  ------------------------MVDYQHVVAIHADATRRKKGNWSEMHEPCLVYAGKGNAVDVDKEDTMILVPPLFAIKDVPENLV
                                M DYQHVVA HADAT+RKKG+W+EMHEPCL   GK NA+DVDKEDTMILVPPLFA+KDVPE+LV
Subjt:  ------------------------MVDYQHVVAIHADATRRKKGNWSEMHEPCLVYAGKGNAVDVDKEDTMILVPPLFAIKDVPENLV

XP_022157187.1 general transcription factor 3C polypeptide 5-like isoform X1 [Momordica charantia]

2.0e-63

67.2

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Query:  MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKIC-----------------
        MGKL+DNTISGLLPT   FAVHYPGYPLSKRRAIE+LGGTQSILKV GLQSNKLELRFRPEDPYSHPTYGELRPC CFLLKIC                 
Subjt:  MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKIC-----------------

Query:  ------------------------MVDYQHVVAIHADATRRKKGNWSEMHEPCLV-YAGKGNAVDVDKEDTMILVPPLFAIKDVPENLV
                                M DYQHVVA HADAT+RKKG+W+EM EPCLV Y GK N +DVDKED MILVPPLFA+KDVPE+LV
Subjt:  ------------------------MVDYQHVVAIHADATRRKKGNWSEMHEPCLV-YAGKGNAVDVDKEDTMILVPPLFAIKDVPENLV

XP_022157190.1 general transcription factor 3C polypeptide 5-like isoform X3 [Momordica charantia]

2.0e-63

67.2

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Query:  MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKIC-----------------
        MGKL+DNTISGLLPT   FAVHYPGYPLSKRRAIE+LGGTQSILKV GLQSNKLELRFRPEDPYSHPTYGELRPC CFLLKIC                 
Subjt:  MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKIC-----------------

Query:  ------------------------MVDYQHVVAIHADATRRKKGNWSEMHEPCLV-YAGKGNAVDVDKEDTMILVPPLFAIKDVPENLV
                                M DYQHVVA HADAT+RKKG+W+EM EPCLV Y GK N +DVDKED MILVPPLFA+KDVPE+LV
Subjt:  ------------------------MVDYQHVVAIHADATRRKKGNWSEMHEPCLV-YAGKGNAVDVDKEDTMILVPPLFAIKDVPENLV

XP_022927790.1 general transcription factor 3C polypeptide 5-like [Cucurbita moschata]

1.2e-63

67.55

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Query:  MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKIC-----------------
        MGKLKDNTISG LPTAQ+FAVHYPGYP SKRRA+E+LGG QSILKVR LQSNKLELRFRPEDPYSHPT+GELRPCSCFLLKIC                 
Subjt:  MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKIC-----------------

Query:  ------------------------MVDYQHVVAIHADATRRKKGNWSEMHEPCLVYAGKGNAVDVDKEDTMILVPPLFAIKDVPENLV
                                M DYQHVVA HADAT+RKKG+W+EMHEPCL   GK NA+DVDKEDTMILVPPLFA+KDVPE+LV
Subjt:  ------------------------MVDYQHVVAIHADATRRKKGNWSEMHEPCLVYAGKGNAVDVDKEDTMILVPPLFAIKDVPENLV

XP_038888320.1 general transcription factor 3C polypeptide 5-like [Benincasa hispida]

5.0e-67

70.74

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Query:  MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKIC-----------------
        MGKLKDN+ISG LPTAQ FAVHYPGYPLSKRRAIESLGGTQSILKVR +QS+KLELRFRPEDPYSHPTYGELRPCSCFLLKIC                 
Subjt:  MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKIC-----------------

Query:  ------------------------MVDYQHVVAIHADATRRKKGNWSEMHEPCLVYAGKGNAVDVDKEDTMILVPPLFAIKDVPENLV
                                M+DYQHV+A+HADATRRKKGNW+EMHEPCL   GKGNAVDVDKEDTMILVPPLF+IKDVPENLV
Subjt:  ------------------------MVDYQHVVAIHADATRRKKGNWSEMHEPCLVYAGKGNAVDVDKEDTMILVPPLFAIKDVPENLV

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E516 general transcription factor 3C polypeptide 5-like isoform X1

3.6e-63

70.21

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Query:  MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKIC-----------------
        MGKLKDNTISG LP AQ FAVHYPGYP SK RAIESLGGTQSILKVRGLQSNKLELRFRP DPYSHPTYGELRPCSC LLKIC                 
Subjt:  MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKIC-----------------

Query:  -----------------------MVDYQHVVAIHADATRRKKGNWSEMHEPCLVYAGKG-NAVDVDKEDTMILVPPLFAIKDVPENLV
                               MVDYQHVVA+HADAT RKKGNW+EMHEP L   GKG NAVDVDKEDTMILVPPLF+IKDVPENLV
Subjt:  -----------------------MVDYQHVVAIHADATRRKKGNWSEMHEPCLVYAGKG-NAVDVDKEDTMILVPPLFAIKDVPENLV

A0A5A7VI24 General transcription factor 3C polypeptide 5-like isoform X1

3.6e-63

70.21

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Query:  MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKIC-----------------
        MGKLKDNTISG LP AQ FAVHYPGYP SK RAIESLGGTQSILKVRGLQSNKLELRFRP DPYSHPTYGELRPCSC LLKIC                 
Subjt:  MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKIC-----------------

Query:  -----------------------MVDYQHVVAIHADATRRKKGNWSEMHEPCLVYAGKG-NAVDVDKEDTMILVPPLFAIKDVPENLV
                               MVDYQHVVA+HADAT RKKGNW+EMHEP L   GKG NAVDVDKEDTMILVPPLF+IKDVPENLV
Subjt:  -----------------------MVDYQHVVAIHADATRRKKGNWSEMHEPCLVYAGKG-NAVDVDKEDTMILVPPLFAIKDVPENLV

A0A6J1DSF0 general transcription factor 3C polypeptide 5-like isoform X3

9.6e-64

67.2

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Query:  MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKIC-----------------
        MGKL+DNTISGLLPT   FAVHYPGYPLSKRRAIE+LGGTQSILKV GLQSNKLELRFRPEDPYSHPTYGELRPC CFLLKIC                 
Subjt:  MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKIC-----------------

Query:  ------------------------MVDYQHVVAIHADATRRKKGNWSEMHEPCLV-YAGKGNAVDVDKEDTMILVPPLFAIKDVPENLV
                                M DYQHVVA HADAT+RKKG+W+EM EPCLV Y GK N +DVDKED MILVPPLFA+KDVPE+LV
Subjt:  ------------------------MVDYQHVVAIHADATRRKKGNWSEMHEPCLV-YAGKGNAVDVDKEDTMILVPPLFAIKDVPENLV

A0A6J1DTW8 general transcription factor 3C polypeptide 5-like isoform X1

9.6e-64

67.2

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Query:  MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKIC-----------------
        MGKL+DNTISGLLPT   FAVHYPGYPLSKRRAIE+LGGTQSILKV GLQSNKLELRFRPEDPYSHPTYGELRPC CFLLKIC                 
Subjt:  MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKIC-----------------

Query:  ------------------------MVDYQHVVAIHADATRRKKGNWSEMHEPCLV-YAGKGNAVDVDKEDTMILVPPLFAIKDVPENLV
                                M DYQHVVA HADAT+RKKG+W+EM EPCLV Y GK N +DVDKED MILVPPLFA+KDVPE+LV
Subjt:  ------------------------MVDYQHVVAIHADATRRKKGNWSEMHEPCLV-YAGKGNAVDVDKEDTMILVPPLFAIKDVPENLV

A0A6J1EPX9 general transcription factor 3C polypeptide 5-like

5.6e-64

67.55

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Query:  MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKIC-----------------
        MGKLKDNTISG LPTAQ+FAVHYPGYP SKRRA+E+LGG QSILKVR LQSNKLELRFRPEDPYSHPT+GELRPCSCFLLKIC                 
Subjt:  MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKIC-----------------

Query:  ------------------------MVDYQHVVAIHADATRRKKGNWSEMHEPCLVYAGKGNAVDVDKEDTMILVPPLFAIKDVPENLV
                                M DYQHVVA HADAT+RKKG+W+EMHEPCL   GK NA+DVDKEDTMILVPPLFA+KDVPE+LV
Subjt:  ------------------------MVDYQHVVAIHADATRRKKGNWSEMHEPCLVYAGKGNAVDVDKEDTMILVPPLFAIKDVPENLV

SwissProt top hits

e value

%identity

Alignment

Q54GS8 General transcription factor 3C polypeptide 5

2.3e-06

34.62

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Query:  DNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKV-RGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKI
        D  I   LPT   + + YP    +  +AIES+GG   I  V +  +   L+L+FRP +P   PT+G   P    LL++
Subjt:  DNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKV-RGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKI

Q8R2T8 General transcription factor 3C polypeptide 5

1.4e-06

34.85

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Query:  QIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKI
        ++  V YPG   ++ + +++LGG +S+ ++    + +LEL FRP+DPY HP        S  LL+I
Subjt:  QIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKI

Q9Y5Q8 General transcription factor 3C polypeptide 5

8.8e-06

31.03

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Query:  QIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKICMVDYQHVVAIHADATRRKKG
        ++  V YPG      + + +LGG + + ++    + +LEL FRP+DPY HP        S  LL+I               TRR+KG
Subjt:  QIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKICMVDYQHVVAIHADATRRKKG

Arabidopsis top hits

e value

%identity

Alignment

AT3G49410.1 Transcription factor IIIC, subunit 5

1.1e-35

41.58

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Query:  MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKIC-----------------
        MG +++ TISG LP+ + F VH+PGYP S  RAIE+LGG Q I + R   SNKLELRFRPEDPY+HP  GE RPCS FLL+I                  
Subjt:  MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKIC-----------------

Query:  ---------------------------MVDYQHVVAIHADATRRKKGNWSEMHEPCLVYAGKGNAVDVDKEDTMILVPPLFAIKDVPENL
                                   M DYQHV+ IHAD  ++KK  W ++ +P     GK + + +  ED M+L+P  FA KD+P+N+
Subjt:  ---------------------------MVDYQHVVAIHADATRRKKGNWSEMHEPCLVYAGKGNAVDVDKEDTMILVPPLFAIKDVPENL

AT5G24450.1 Transcription factor IIIC, subunit 5

1.9e-35

41.97

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Query:  MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKIC-----------------
        MG +++ TISG LP+ + F VHYPGYP S  RA+E+LGG Q I   R   SNKLEL FRPEDP +HP YGE R C+ FLLKI                  
Subjt:  MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKIC-----------------

Query:  -----------------------------MVDYQHVVAIHADATRRKKGNWSEMHEPCLVYAGKGNAVDVDKEDTMILVPPLFAIKDVPENLV
                                     MVDYQHV+ IHAD  ++KK  W E+       AGK + +D+  ED M+L+P  F+ KD P+NLV
Subjt:  -----------------------------MVDYQHVVAIHADATRRKKGNWSEMHEPCLVYAGKGNAVDVDKEDTMILVPPLFAIKDVPENLV

Sequences

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CDS sequence

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ATGGGGAAGCTGAAAGACAACACTATCTCAGGGCTCTTACCTACTGCCCAGATTTTTGCAGTTCACTATCCTGGTTATCCTTTGTCCAAGCGTCGGGCAATTGAAAGTCT
AGGAGGAACACAATCAATTCTCAAGGTTCGTGGTCTCCAATCAAATAAGTTAGAGCTTCGATTTAGACCTGAAGATCCATATTCACATCCAACATATGGGGAGCTTCGCC
CATGCAGTTGTTTTCTTTTGAAAATATGCATGGTTGACTACCAACATGTCGTTGCTATTCATGCGGATGCTACCCGGCGGAAGAAGGGGAATTGGTCAGAAATGCACGAG
CCATGTTTAGTTTATGCAGGTAAGGGTAACGCCGTTGATGTGGACAAGGAGGATACTATGATTTTAGTTCCTCCATTATTTGCGATTAAGGATGTGCCTGAAAATTTAGT
GTGA

mRNA sequence

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Protein sequence

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MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKICMVDYQHVVAIHADATRRKKGNWSEMHE
PCLVYAGKGNAVDVDKEDTMILVPPLFAIKDVPENLV

HG10019076 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome