; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10019112 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019112
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
Genome locationChr04:16953957..16960636
RNA-Seq ExpressionHG10019112
SyntenyHG10019112
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_010690674.1 PREDICTED: uncharacterized protein LOC104904177 [Beta vulgaris subsp. vulgaris]2.6e-1333.33Show/hide
Query:  WRSPEERVIKMNVDASKVGIAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLGNSSIWGIL
        W  P    +K+NVDA  VG  G G+ +   D+ G VL A+ F   E  +    EA A+ +GL ++  LG  ++ VES+S + I+A+ S   G+S    I+
Subjt:  WRSPEERVIKMNVDASKVGIAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLGNSSIWGIL

Query:  DGISDWMGQFHSFGCSYISRNCNGVAHSLARWAPINVDGGQWNAHFP
        D + D +  F +   S++ R+ N VAH LA   P  +    W    P
Subjt:  DGISDWMGQFHSFGCSYISRNCNGVAHSLARWAPINVDGGQWNAHFP

XP_021721482.1 uncharacterized protein LOC110689043 [Chenopodium quinoa]2.4e-1433.96Show/hide
Query:  ERWRSPEERVIKMNVDASKVGIAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLGNSSIWG
        ERW  P E  +KMNVD   +G AG G+    RD  G VL AA  + +E   V   EA A+  GL L+   G+  + +ES+S ++++A+   S G S+   
Subjt:  ERWRSPEERVIKMNVDASKVGIAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLGNSSIWG

Query:  ILDGISDWMGQFHSFGCSYISRNCNGVAHSLARWAPINVDGGQWNAHFPGWLRPSVEHD
        +++ I++    F     S++ RN N VAH LA + P ++    W  H P  +   V +D
Subjt:  ILDGISDWMGQFHSFGCSYISRNCNGVAHSLARWAPINVDGGQWNAHFPGWLRPSVEHD

XP_021774242.1 uncharacterized protein LOC110738174 [Chenopodium quinoa]7.7e-1332.48Show/hide
Query:  WRSPEERVIKMNVDASKVGIAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLGNSSIWGIL
        W  PE   IK+NVDA  +G  G G     RD +G VL  AA+  +E  +    EA  ++ G+  +  +G  N+ VES+   LI+A+   S G S+   IL
Subjt:  WRSPEERVIKMNVDASKVGIAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLGNSSIWGIL

Query:  DGISDWMGQFHSFGCSYISRNCNGVAHSLARWAPINVDGGQWNAHFPGWLRPSVEHD
        D +      F     S++  + N VAH+LA + P  +    W    P  + P V +D
Subjt:  DGISDWMGQFHSFGCSYISRNCNGVAHSLARWAPINVDGGQWNAHFPGWLRPSVEHD

XP_024177664.1 uncharacterized protein LOC112183512 [Rosa chinensis]2.6e-1335.62Show/hide
Query:  ERWRSPEERVIKMNVDASKVGIAGM-GMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLGNSSIW
        E+W  P    +K+NVDA+  G  G+ G+C+ LRD  G++  AA      N  VLA EALA+L GL L    G  N+ +ES++  ++ A++ + L  S   
Subjt:  ERWRSPEERVIKMNVDASKVGIAGM-GMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLGNSSIW

Query:  GILDGISDWMGQFHSFGCSYISRNCNGVAHSLARWAPINVDGGQWNAHFPGWLRPSVEHD
         I D +   M +F       I+R+CN VAH+LAR A        W    P WL   +++D
Subjt:  GILDGISDWMGQFHSFGCSYISRNCNGVAHSLARWAPINVDGGQWNAHFPGWLRPSVEHD

XP_027088609.1 uncharacterized protein LOC113709962 [Coffea arabica]1.7e-1229.07Show/hide
Query:  DRGEER-WRSPEERVIKMNVDAS-KVGIAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLG
        DR ++  W  P+E VI++N DA+    +      I  R+W G+++KA    + +  D    E+LA+   L+++      NI V+++S+ ++  I++ ++ 
Subjt:  DRGEER-WRSPEERVIKMNVDAS-KVGIAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLG

Query:  NSSIWGILDGISDWMGQFHSFGCSYISRNCNGVAHSLARWAPINVDGGQWNAHFPGWLRPSVEHDYSVCNPY
        +S+I  +L+ I D   +F     S++ R  NG +H+LA++A   V   +W   FP WL   V  D  V  P+
Subjt:  NSSIWGILDGISDWMGQFHSFGCSYISRNCNGVAHSLARWAPINVDGGQWNAHFPGWLRPSVEHDYSVCNPY

TrEMBL top hitse value%identityAlignment
A0A0J8BAU9 Uncharacterized protein2.4e-1229.71Show/hide
Query:  RHANGREIGLWDRGEERWRSPEERVIKMNVDASKVG-IAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQIL
        R  NG +     R ++RW  P    IK+NVDA+  G    +G+ +  RD  G+VL+A +     +      EA A+L+    +   G  N+ +ES++Q++
Subjt:  RHANGREIGLWDRGEERWRSPEERVIKMNVDASKVG-IAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQIL

Query:  IKAIHSNSLGNSSIWGILDGISDWMGQFHSFGCSYISRNCNGVAHSLARWAPINVDGGQWNAHFPGWLRPSVEHD
        I AI+S       I  +L+ + + +  F +   S+  R CN +AH LA+WA  N     W    P W+   +  D
Subjt:  IKAIHSNSLGNSSIWGILDGISDWMGQFHSFGCSYISRNCNGVAHSLARWAPINVDGGQWNAHFPGWLRPSVEHD

A0A2Z6P088 Uncharacterized protein (Fragment)9.2e-1232.57Show/hide
Query:  RWRSPEERVIKMNVDASKV---GIAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLGNSSI
        RW  P    +K NVD + V   G   MG+C   RD  G  +     +Q+     + GEA A+L  +  +   GL  +  ES+S++L++AIH    GNS  
Subjt:  RWRSPEERVIKMNVDASKV---GIAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLGNSSI

Query:  WGILDGISDWMGQFHSFGCSYISRNCNGVAHSLAR----WAPINVDGGQWNAHF--------PGW-LRPSVEHDY
          I+  I   M  F +F   ++ R  N VAH+LAR    WA  +  GG W+  +        P W  RPS    Y
Subjt:  WGILDGISDWMGQFHSFGCSYISRNCNGVAHSLAR----WAPINVDGGQWNAHF--------PGW-LRPSVEHDY

A0A6P6UDL9 uncharacterized protein LOC1137099628.3e-1329.07Show/hide
Query:  DRGEER-WRSPEERVIKMNVDAS-KVGIAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLG
        DR ++  W  P+E VI++N DA+    +      I  R+W G+++KA    + +  D    E+LA+   L+++      NI V+++S+ ++  I++ ++ 
Subjt:  DRGEER-WRSPEERVIKMNVDAS-KVGIAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLG

Query:  NSSIWGILDGISDWMGQFHSFGCSYISRNCNGVAHSLARWAPINVDGGQWNAHFPGWLRPSVEHDYSVCNPY
        +S+I  +L+ I D   +F     S++ R  NG +H+LA++A   V   +W   FP WL   V  D  V  P+
Subjt:  NSSIWGILDGISDWMGQFHSFGCSYISRNCNGVAHSLARWAPINVDGGQWNAHFPGWLRPSVEHDYSVCNPY

A0A6P6X8X6 uncharacterized protein LOC1137408697.0e-1226.79Show/hide
Query:  EERWRSPEERVIKMNVDASKVG-IAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLGNSSI
        +  W  P+E V+++N DA+ +  +    + I  R+W+G ++KA              E+LA+   L ++  +G  NI V+S+ +I++ +I++ ++ N  +
Subjt:  EERWRSPEERVIKMNVDASKVG-IAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLGNSSI

Query:  WGILDGISDWMGQFHSFGCSYISRNCNGVAHSLARWAPINVDGGQWNAHFPGWLRPSVEHDYSVCNPY
          IL+ I      F S   S+  R  NG +H++A++A  +V   +W   F  WL      D  V  P+
Subjt:  WGILDGISDWMGQFHSFGCSYISRNCNGVAHSLARWAPINVDGGQWNAHFPGWLRPSVEHDYSVCNPY

A0A7J6ETR0 RNase H domain-containing protein7.0e-1233.55Show/hide
Query:  RWRSPEERVIKMNVDASKV-GIAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLGNSSIWG
        RW  P  R   +N DAS + G  G G+ + +RD  G ++ AA  +      VL  E +A+   L L+    L N+ + S+SQ ++KA+  N+  N+  WG
Subjt:  RWRSPEERVIKMNVDASKV-GIAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLGNSSIWG

Query:  ILDGISDWM---GQFHSFGCSYISRNCNGVAHSLARWAPINVDGGQWNAHFP
        +L  + DW+    +FH+    +  RNCN VAH LA W  +    G W    P
Subjt:  ILDGISDWM---GQFHSFGCSYISRNCNGVAHSLARWAPINVDGGQWNAHFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein2.2e-0523.49Show/hide
Query:  RGEERWRSPEERVIKMNVDASKV-GIAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLGNS
        R   +W  P E  +K N D+    G         +R+  G ++       + +   L  EAL  L  L + +  GL  +W ES+S+ L+  I +N   +S
Subjt:  RGEERWRSPEERVIKMNVDASKV-GIAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLGNS

Query:  SIWGILDGISDWMGQFHSFGCSYISRNCNGVAHSLARWAPINVDGGQWNAHFPGWLRPSVEHDYSV
         +  ++  I  WM +       +++R  N  A +LA          Q     P WL  ++ + Y++
Subjt:  SIWGILDGISDWMGQFHSFGCSYISRNCNGVAHSLARWAPINVDGGQWNAHFPGWLRPSVEHDYSV

AT2G13980.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-0424.81Show/hide
Query:  RWRSPEERVIKMNVDAS-KVGIAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLGNSSIWG
        +W++P +  IK N DA   V          +R+  G      +   +  +  L  E  A+L  L  ++  G + + +E + + L   + S S  ++ +  
Subjt:  RWRSPEERVIKMNVDAS-KVGIAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLGNSSIWG

Query:  ILDGISDWMGQFHSFGCSYISRNCNGVAHSLAR
        +LD I  W  +F +   S++ R  N VAH LA+
Subjt:  ILDGISDWMGQFHSFGCSYISRNCNGVAHSLAR

AT3G09510.1 Ribonuclease H-like superfamily protein3.3e-0626.62Show/hide
Query:  WRSPEERVIKMNVDA----SKVGIAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLGNSSI
        WR+P    +K N DA     K+   G  +   +R+  G  +   +      ++ L  E  A+L  L  ++  G   +++E + Q LI  I+  S  +SS+
Subjt:  WRSPEERVIKMNVDA----SKVGIAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLGNSSI

Query:  WGILDGISDWMGQFHSFGCSYISRNCNGVAHSLARWAPINVDGGQWNAHFPGWL
           L+ IS W  +F S    +I R  N +AH LA++          +   P WL
Subjt:  WGILDGISDWMGQFHSFGCSYISRNCNGVAHSLARWAPINVDGGQWNAHFPGWL

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.2e-0927.88Show/hide
Query:  RWRSPEERVIKMNVDAS---KVGIAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLGNSSI
        +W  P    +K N DAS   +  ++G+G    LR+ QG V++      +        E   +++ +  S+G G   +  E ++Q + + I++ S  N  +
Subjt:  RWRSPEERVIKMNVDAS---KVGIAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLGNSSI

Query:  WGILDGISDWMGQFHSFGCSYISRNCNGVAHSLARWAPINVDGGQWNAHF--PGWLRPSVEHDYS
           LD I  W+  F S   S+  R  NG A  LA+ A    +  QW+     P +L P V +DYS
Subjt:  WGILDGISDWMGQFHSFGCSYISRNCNGVAHSLARWAPINVDGGQWNAHF--PGWLRPSVEHDYS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCGAAGTGAGAGGGAGACATGGCAGAGAAACCCATCGGAGAACGGTGCCGGAGAGGTCTAAGAGTGGGCGAAGAGAGGGGAGACTTCAGGGAAATCTCTCAGGGGA
TGGAAAAGGTAGCATGGCGAAGACACGAAGACCTGATAAATGGGGGAGGTGGGTGCAAGTGGCTAAGGTGAGAGCAAAGACGATCCTAGAGGCCATTCGGGATTTTCAAT
ACGCACAGGGGCTACCTAGGTTGTCGGATGGGGTTAGGCATGCAAACGGGAGGGAGATTGGGTTGTGGGATAGAGGGGAGGAGCGGTGGAGATCTCCAGAGGAGAGAGTG
ATCAAGATGAATGTGGATGCCTCAAAAGTGGGAATTGCTGGGATGGGGATGTGCATCTTTCTCCGTGATTGGCAAGGTAGAGTTCTAAAAGCTGCTGCATTTTATCAGGA
AGAGAATAATGATGTCTTGGCAGGGGAAGCTTTGGCTATGTTATTTGGGCTTTTATTGTCTTTTGGGTTGGGTTTAATTAATATTTGGGTGGAATCAAACTCCCAAATAT
TAATTAAAGCCATCCATTCAAATTCATTGGGTAATTCCTCAATTTGGGGGATTTTAGATGGGATTAGTGATTGGATGGGTCAATTTCACAGTTTTGGTTGTTCTTACATC
TCGCGTAATTGTAATGGTGTTGCTCACTCCTTAGCGAGATGGGCACCGATTAATGTTGATGGGGGCCAATGGAATGCCCATTTTCCTGGGTGGTTGAGACCATCTGTTGA
GCATGATTATTCTGTTTGTAACCCGTATTACGATGGTTTGAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCGAAGTGAGAGGGAGACATGGCAGAGAAACCCATCGGAGAACGGTGCCGGAGAGGTCTAAGAGTGGGCGAAGAGAGGGGAGACTTCAGGGAAATCTCTCAGGGGA
TGGAAAAGGTAGCATGGCGAAGACACGAAGACCTGATAAATGGGGGAGGTGGGTGCAAGTGGCTAAGGTGAGAGCAAAGACGATCCTAGAGGCCATTCGGGATTTTCAAT
ACGCACAGGGGCTACCTAGGTTGTCGGATGGGGTTAGGCATGCAAACGGGAGGGAGATTGGGTTGTGGGATAGAGGGGAGGAGCGGTGGAGATCTCCAGAGGAGAGAGTG
ATCAAGATGAATGTGGATGCCTCAAAAGTGGGAATTGCTGGGATGGGGATGTGCATCTTTCTCCGTGATTGGCAAGGTAGAGTTCTAAAAGCTGCTGCATTTTATCAGGA
AGAGAATAATGATGTCTTGGCAGGGGAAGCTTTGGCTATGTTATTTGGGCTTTTATTGTCTTTTGGGTTGGGTTTAATTAATATTTGGGTGGAATCAAACTCCCAAATAT
TAATTAAAGCCATCCATTCAAATTCATTGGGTAATTCCTCAATTTGGGGGATTTTAGATGGGATTAGTGATTGGATGGGTCAATTTCACAGTTTTGGTTGTTCTTACATC
TCGCGTAATTGTAATGGTGTTGCTCACTCCTTAGCGAGATGGGCACCGATTAATGTTGATGGGGGCCAATGGAATGCCCATTTTCCTGGGTGGTTGAGACCATCTGTTGA
GCATGATTATTCTGTTTGTAACCCGTATTACGATGGTTTGAATTAA
Protein sequenceShow/hide protein sequence
MGEVRGRHGRETHRRTVPERSKSGRREGRLQGNLSGDGKGSMAKTRRPDKWGRWVQVAKVRAKTILEAIRDFQYAQGLPRLSDGVRHANGREIGLWDRGEERWRSPEERV
IKMNVDASKVGIAGMGMCIFLRDWQGRVLKAAAFYQEENNDVLAGEALAMLFGLLLSFGLGLINIWVESNSQILIKAIHSNSLGNSSIWGILDGISDWMGQFHSFGCSYI
SRNCNGVAHSLARWAPINVDGGQWNAHFPGWLRPSVEHDYSVCNPYYDGLN