CuGenDBv2

Gene ID	HG10019115
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	50S ribosomal protein L23
Genome location	Chr04:17036290..17036811
RNA-Seq Expression	HG10019115
Synteny	HG10019115
Gene Ontology terms	GO:0010584 - pollen exine formation (biological process) GO:0015789 - UDP-N-acetylgalactosamine transmembrane transport (biological process) GO:0032543 - mitochondrial translation (biological process) GO:1902183 - regulation of shoot apical meristem development (biological process) GO:1903070 - negative regulation of ER-associated ubiquitin-dependent protein catabolic process (biological process) GO:1903857 - negative regulation of cytokinin dehydrogenase activity (biological process) GO:1990569 - UDP-N-acetylglucosamine transmembrane transport (biological process) GO:0000139 - Golgi membrane (cellular component) GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0005783 - endoplasmic reticulum (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005463 - UDP-N-acetylgalactosamine transmembrane transporter activity (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0003729 - mRNA binding (molecular function)
InterPro domains	IPR013025 - Ribosomal protein L25/L23 IPR012678 - Ribosomal protein L23/L15e core domain superfamily IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004137193.1 uncharacterized protein LOC101221365 [Cucumis sativus]

5.3e-84

94.83

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+TLNMEGKKKKRGG+LIAKPDYKKAYVTLRN LSISPD+YP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVESKTYKGFADRGRRRT-GGAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAK+HWLHEKEPV  KTYKGFADRGRRR+ GGAETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVESKTYKGFADRGRRRT-GGAETVEPSTKFPWSSMRSGR

XP_022985025.1 uncharacterized protein LOC111483116 [Cucurbita maxima]

3.7e-85

95.95

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVESKTYKGFADRGRRRTGGAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPV  K YKGF+DR RRRTG AETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVESKTYKGFADRGRRRTGGAETVEPSTKFPWSSMRSGR

XP_023531609.1 uncharacterized protein LOC111793793 [Cucurbita pepo subsp. pepo]

1.1e-84

95.95

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGGLLIAKPDYKKAYVTLRN LSISPDVYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVESKTYKGFADRGRRRTGGAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKE V  KTYKGFADRGRRR GGAE VEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVESKTYKGFADRGRRRTGGAETVEPSTKFPWSSMRSGR

XP_023552749.1 uncharacterized protein LOC111810290 [Cucurbita pepo subsp. pepo]

1.4e-84

94.22

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYP
        MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGGLLIAKPDYKKAYVTLRN LSISPDVYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVESKTYKGFADRGRRRTGGAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSK SIVEEGEAKRHWLHEKEPVE K+YKGFA+RGRR+TG AET+EPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVESKTYKGFADRGRRRTGGAETVEPSTKFPWSSMRSGR

XP_038905477.1 uncharacterized protein LOC120091488 [Benincasa hispida]

3.1e-84

95.95

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRN LSISPDVYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVESKTYKGFADRGRRRTGGAETVEPSTKFPWSSMRSGR
        IRIIEEDK+NMNKQSKSSIVEEGEAKRHWLHEKEPV  KTYKGFADRGRR  GGAETVE STKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVESKTYKGFADRGRRRTGGAETVEPSTKFPWSSMRSGR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L0J2 Uncharacterized protein

2.6e-84

94.83

Show/hide

Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+TLNMEGKKKKRGG+LIAKPDYKKAYVTLRN LSISPD+YP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVESKTYKGFADRGRRRT-GGAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAK+HWLHEKEPV  KTYKGFADRGRRR+ GGAETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVESKTYKGFADRGRRRT-GGAETVEPSTKFPWSSMRSGR

A0A5D3CZJ7 Nucleotide-binding, alpha-beta plait

1.3e-83

94.83

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVRTLNMEGKKKKRGG+LIAKPDYKKAYVTLRN LSIS D+YP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVESKTYKGFADRGRRRT-GGAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPV  KTYKGFADRGRRR  GGAETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVESKTYKGFADRGRRRT-GGAETVEPSTKFPWSSMRSGR

A0A6J1EUM4 uncharacterized protein LOC111436066

4.4e-84

94.22

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYP
        MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGGLLIAKPDYKKAYVTLRN LSISPDVYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVESKTYKGFADRGRRRTGGAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPV  K YKGF++R RRRTG AETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVESKTYKGFADRGRRRTGGAETVEPSTKFPWSSMRSGR

A0A6J1FSK6 uncharacterized protein LOC111448049

5.7e-84

95.38

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYP
        M SRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGGLLIAKPDYKKAYVTLRN LSISPDVYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVESKTYKGFADRGRRRTGGAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKE V  KTYKGFADRGRRR GGAE VEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVESKTYKGFADRGRRRTGGAETVEPSTKFPWSSMRSGR

A0A6J1JA70 uncharacterized protein LOC111483116

1.8e-85

95.95

Show/hide

Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVESKTYKGFADRGRRRTGGAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPV  K YKGF+DR RRRTG AETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVESKTYKGFADRGRRRTGGAETVEPSTKFPWSSMRSGR

SwissProt top hits

e value

%identity

Alignment

A0KF23 50S ribosomal protein L23

2.1e-06

45.76

Show/hide

Query:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR
        I  K    A+K E+K  +  L+  EV+ VRTLNM+GK K+ G  +  + D+KKAYVTL+
Subjt:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR

P55839 50S ribosomal protein L23

1.6e-06

42.19

Show/hide

Query:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSI
        I  K    A+K+EI   +E L+  +VD VRT+ ++GK K+RG  +  + D+KKAYVTL+   S+
Subjt:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSI

Q0ABH3 50S ribosomal protein L23

1.6e-06

43.08

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Query:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSI
        E+  K    A K EI++ +E L+  +V  VRT+ M+GK+K+ G L   +PD+KKAYVTL     I
Subjt:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSI

Q0I161 50S ribosomal protein L23

7.1e-07

42.47

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Query:  TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSI
        TN TE    I  K    A+K+EI   +E L+  +VD VRT+ ++GK K+RG  +  + D+KKAYVTL+   S+
Subjt:  TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSI

Q605B4 50S ribosomal protein L23

5.5e-07

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Query:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSI
        +   +  P+ASK++IK  +E ++G +VD VR LN++GK K+ G  +  + D+KKAYV L+    I
Subjt:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSI

Arabidopsis top hits

e value

%identity

Alignment

AT4G39880.1 Ribosomal protein L23/L15e family protein

1.2e-52

65.71

Show/hide

Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYP
        MGSRLG RVVHFANLPIKLLMP   TNI E ALKTIPSASKIEIKRVLESLYGF+V+KV TLNM+GKKKKRGGLLIAK DYKKAYVTLR+ LSIS D++P
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVESKTY-KGFADRGRRR----TGGAETVEPSTKFPWSSMR
        ++ IEED+++  K S S + EE + K HWL  KE  E   Y KG   RG  R    T G      + KFPWS+MR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVESKTY-KGFADRGRRR----TGGAETVEPSTKFPWSSMR

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGAAGCAGACTCGGGAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCCTTCACCAACATCACTGAAATTGCTCTTAAAACCATTCC
TTCTGCTTCCAAAATCGAAATCAAGCGCGTCCTTGAGAGCCTTTACGGCTTTGAGGTCGATAAAGTTCGAACTCTCAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGC
TTTTGATCGCAAAGCCAGATTACAAGAAGGCCTATGTTACTCTCAGGAATTCCTTGTCAATCTCTCCGGACGTGTACCCGATCCGGATTATAGAGGAGGACAAAAGGAAT
ATGAATAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCCAAGAGGCATTGGCTGCATGAGAAAGAGCCTGTAGAATCCAAAACTTACAAGGGTTTTGCTGATAG
AGGCCGCCGACGAACTGGCGGCGCTGAAACTGTTGAACCATCGACAAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAG

mRNA sequence

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Protein sequence

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MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRN
MNKQSKSSIVEEGEAKRHWLHEKEPVESKTYKGFADRGRRRTGGAETVEPSTKFPWSSMRSGR

HG10019115 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome