; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10019145 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019145
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRibonuclease T(2)
Genome locationChr04:17581445..17583176
RNA-Seq ExpressionHG10019145
SyntenyHG10019145
Gene Ontology termsGO:0016070 - RNA metabolic process (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0016020 - membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0033897 - ribonuclease T2 activity (molecular function)
InterPro domainsIPR001568 - Ribonuclease T2-like
IPR036430 - Ribonuclease T2-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011653385.1 ribonuclease 2 [Cucumis sativus]4.7e-2759.79Show/hide
Query:  SLKAAAVVVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNENEV
        S +   VVVVV+GIV+ +    G  V KEQREFDYF+LALQWP+T C N+T+CC TNACCR   +  +    GLWP+YEGKGWPSCCTNETF+E ++
Subjt:  SLKAAAVVVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNENEV

XP_022922894.1 ribonuclease 2-like [Cucurbita moschata]1.0e-2963.11Show/hide
Query:  MSYFSLKAAA-VVVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNEN
        M+ F+ KAAA VV++V+ + L+ Q AEG+ V KEQREFDYFVLALQWP + CRN+++CCPTN CC       +    GLWPQY+ KGWPSCCTNETFNEN
Subjt:  MSYFSLKAAA-VVVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNEN

Query:  EVS
        EVS
Subjt:  EVS

XP_022985160.1 ribonuclease 2-like [Cucurbita maxima]8.6e-2962.14Show/hide
Query:  MSYFSLKAAA-VVVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNEN
        M+ F+ KAAA VV +V+ + L  Q  EG+ V KEQREFDYFVLALQWP + CRN+++CCPTN CC       +    GLWPQY+ KGWPSCCTNETFNEN
Subjt:  MSYFSLKAAA-VVVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNEN

Query:  EVS
        EVS
Subjt:  EVS

XP_038876678.1 ribonuclease 2-like isoform X1 [Benincasa hispida]8.6e-3776.92Show/hide
Query:  MSYFSLKAAA--VVVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNE
        M  FSLKAAA  V VVV+GIVL LQTAEG    KEQREFDYFVLALQWPA LCRNIT+CCPTNACCRG  +  +    GLWPQYEGKGWPSCCTNETFNE
Subjt:  MSYFSLKAAA--VVVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNE

Query:  NEVS
        NE+S
Subjt:  NEVS

XP_038876679.1 ribonuclease 2-like isoform X2 [Benincasa hispida]8.6e-3776.92Show/hide
Query:  MSYFSLKAAA--VVVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNE
        M  FSLKAAA  V VVV+GIVL LQTAEG    KEQREFDYFVLALQWPA LCRNIT+CCPTNACCRG  +  +    GLWPQYEGKGWPSCCTNETFNE
Subjt:  MSYFSLKAAA--VVVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNE

Query:  NEVS
        NE+S
Subjt:  NEVS

TrEMBL top hitse value%identityAlignment
A0A0A0KVR6 Ribonuclease T(2)2.3e-2759.79Show/hide
Query:  SLKAAAVVVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNENEV
        S +   VVVVV+GIV+ +    G  V KEQREFDYF+LALQWP+T C N+T+CC TNACCR   +  +    GLWP+YEGKGWPSCCTNETF+E ++
Subjt:  SLKAAAVVVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNENEV

A0A1S3CHU7 Ribonuclease T(2)6.7e-2761.86Show/hide
Query:  SLKAAAVVVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNENEV
        S +   VVVVV+GI++      G  V KEQREFDYFVLALQWP+TLCRN+T CCPTNAC R   +  K    GLWP+YEGKGWPSCCTN TFN+ ++
Subjt:  SLKAAAVVVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNENEV

A0A1S3CHW7 Ribonuclease T(2)6.7e-2761.86Show/hide
Query:  SLKAAAVVVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNENEV
        S +   VVVVV+GI++      G  V KEQREFDYFVLALQWP+TLCRN+T CCPTNAC R   +  K    GLWP+YEGKGWPSCCTN TFN+ ++
Subjt:  SLKAAAVVVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNENEV

A0A6J1E4S1 Ribonuclease T(2)4.9e-3063.11Show/hide
Query:  MSYFSLKAAA-VVVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNEN
        M+ F+ KAAA VV++V+ + L+ Q AEG+ V KEQREFDYFVLALQWP + CRN+++CCPTN CC       +    GLWPQY+ KGWPSCCTNETFNEN
Subjt:  MSYFSLKAAA-VVVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNEN

Query:  EVS
        EVS
Subjt:  EVS

A0A6J1JAL4 Ribonuclease T(2)4.2e-2962.14Show/hide
Query:  MSYFSLKAAA-VVVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNEN
        M+ F+ KAAA VV +V+ + L  Q  EG+ V KEQREFDYFVLALQWP + CRN+++CCPTN CC       +    GLWPQY+ KGWPSCCTNETFNEN
Subjt:  MSYFSLKAAA-VVVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNEN

Query:  EVS
        EVS
Subjt:  EVS

SwissProt top hitse value%identityAlignment
P42814 Ribonuclease 22.1e-1741.76Show/hide
Query:  VVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNENEVS
        ++++V  +      + + + + QREFDYF L+LQWP T CR    CC  NACCRG     +    GLWP Y    WPSCC    F E E+S
Subjt:  VVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNENEVS

P42815 Ribonuclease 34.1e-0534.67Show/hide
Query:  VRKEQREFDYFVLALQWPATLCRNITLCC-PTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNET-FNENEVS
        V+   ++FD+F   LQWP   C +   CC P        F     G  GLWP Y+  GWP  C  ++ F++  VS
Subjt:  VRKEQREFDYFVLALQWPATLCRNITLCC-PTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNET-FNENEVS

Arabidopsis top hitse value%identityAlignment
AT1G14220.1 Ribonuclease T2 family protein5.1e-1135.96Show/hide
Query:  VGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCC-PTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNET-FNENEVS
        V ++L+L   +G+ V + Q +FD+F   LQWP   C     CC PT+      F     G  GLWP Y G  WPS C  ++ F+ +++S
Subjt:  VGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCC-PTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNET-FNENEVS

AT1G26820.1 ribonuclease 32.9e-0634.67Show/hide
Query:  VRKEQREFDYFVLALQWPATLCRNITLCC-PTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNET-FNENEVS
        V+   ++FD+F   LQWP   C +   CC P        F     G  GLWP Y+  GWP  C  ++ F++  VS
Subjt:  VRKEQREFDYFVLALQWPATLCRNITLCC-PTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNET-FNENEVS

AT2G39780.1 ribonuclease 21.5e-1841.76Show/hide
Query:  VVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNENEVS
        ++++V  +      + + + + QREFDYF L+LQWP T CR    CC  NACCRG     +    GLWP Y    WPSCC    F E E+S
Subjt:  VVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNENEVS

AT2G39780.2 ribonuclease 21.5e-1841.76Show/hide
Query:  VVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNENEVS
        ++++V  +      + + + + QREFDYF L+LQWP T CR    CC  NACCRG     +    GLWP Y    WPSCC    F E E+S
Subjt:  VVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNENEVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTATTTCTCTTTGAAAGCGGCGGCGGTGGTGGTGGTTGTTGTTGGTATTGTTCTTCGGCTGCAAACGGCGGAGGGCGTGGCCGTCCGGAAGGAGCAGAGGGAATT
TGACTACTTTGTATTGGCTCTTCAATGGCCAGCAACTTTATGCAGAAACATAACCCTATGTTGCCCCACCAACGCTTGCTGCCGCGGTATTTTTAATGTCTTAAAAAATG
GCACAGATGGGCTATGGCCTCAATACGAAGGGAAAGGATGGCCTTCATGTTGTACTAATGAAACCTTCAATGAAAATGAGGTCTCTTTCTCTCACTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTATTTCTCTTTGAAAGCGGCGGCGGTGGTGGTGGTTGTTGTTGGTATTGTTCTTCGGCTGCAAACGGCGGAGGGCGTGGCCGTCCGGAAGGAGCAGAGGGAATT
TGACTACTTTGTATTGGCTCTTCAATGGCCAGCAACTTTATGCAGAAACATAACCCTATGTTGCCCCACCAACGCTTGCTGCCGCGGTATTTTTAATGTCTTAAAAAATG
GCACAGATGGGCTATGGCCTCAATACGAAGGGAAAGGATGGCCTTCATGTTGTACTAATGAAACCTTCAATGAAAATGAGGTCTCTTTCTCTCACTAA
Protein sequenceShow/hide protein sequence
MSYFSLKAAAVVVVVVGIVLRLQTAEGVAVRKEQREFDYFVLALQWPATLCRNITLCCPTNACCRGIFNVLKNGTDGLWPQYEGKGWPSCCTNETFNENEVSFSH