; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10019151 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019151
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description30S ribosomal protein S12, chloroplastic
Genome locationChr04:17687012..17688035
RNA-Seq ExpressionHG10019151
SyntenyHG10019151
Gene Ontology termsGO:0005840 - ribosome (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAD4981688.1 hypothetical protein E3N88_18359 [Mikania micrantha]1.0e-8874.49Show/hide
Query:  SRAPLVSAFLKAPLSFKRIRGMSSSGGILNALATALHGPIRTTPSIHHLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPI
        + AP VSAF KAPLSFKRIRGMSS GGILNALATALHG IRT PSIH LRLGLLGYLIPFAPLAFV+QCQCRPSRVLSPLVFFPISTHFTAPPEIPSAP 
Subjt:  SRAPLVSAFLKAPLSFKRIRGMSSSGGILNALATALHGPIRTTPSIHHLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPI

Query:  VLQLGSFHSLSRVKPWDLTADLKSHLQTLYAQSFRITLASSVLSRLL-AQSLLPPCGMLRQAFSHCEKFPTAASRRSLGRVSVPVWLIILSDQLLIIVLP
        VLQL +   +       L     +  +   A S    +ASS    +    +      +LRQAF+HC KFPTAASRRSLGRVSVPVWLIILSDQLLII LP
Subjt:  VLQLGSFHSLSRVKPWDLTADLKSHLQTLYAQSFRITLASSVLSRLL-AQSLLPPCGMLRQAFSHCEKFPTAASRRSLGRVSVPVWLIILSDQLLIIVLP

Query:  FPAVVPFPRAGSYALLTRPPLETPLPVQLACVKHAASVHPEPGSNSP
        FPAVVP PRAGSYALLTRPPLETPLPV+LACVKHAASVHPEPGSNSP
Subjt:  FPAVVPFPRAGSYALLTRPPLETPLPVQLACVKHAASVHPEPGSNSP

KAD7117006.1 hypothetical protein E3N88_04274 [Mikania micrantha]4.7e-8974.9Show/hide
Query:  SRAPLVSAFLKAPLSFKRIRGMSSSGGILNALATALHGPIRTTPSIHHLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPI
        + AP VSAF KAPLSFKRIRGMSS GGILNALATALHG IRT PSIH LRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAP 
Subjt:  SRAPLVSAFLKAPLSFKRIRGMSSSGGILNALATALHGPIRTTPSIHHLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPI

Query:  VLQLGSFHSLSRVKPWDLTADLKSHLQTLYAQSFRITLASSVLSRLL-AQSLLPPCGMLRQAFSHCEKFPTAASRRSLGRVSVPVWLIILSDQLLIIVLP
        VLQL +   +       L     +  +   A S    +ASS    +    +      +LRQAF+HC KFPTAASRRSLGRVSVPVWLIILSDQLLII LP
Subjt:  VLQLGSFHSLSRVKPWDLTADLKSHLQTLYAQSFRITLASSVLSRLL-AQSLLPPCGMLRQAFSHCEKFPTAASRRSLGRVSVPVWLIILSDQLLIIVLP

Query:  FPAVVPFPRAGSYALLTRPPLETPLPVQLACVKHAASVHPEPGSNSP
        FPAVVP PRAGSYALLTRPPLETPLPV+LACVKHAASVHPEPGSNSP
Subjt:  FPAVVPFPRAGSYALLTRPPLETPLPVQLACVKHAASVHPEPGSNSP

KAG2239906.1 hypothetical protein Bca52824_091265 [Brassica carinata]2.2e-9980.48Show/hide
Query:  PLVSAFLKAPLSFKRI--RGMSSS-----GGILNALATALHGPIRTTPSIHHLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIP
        P+ S     PL   ++   GM+SS     GGILNALATALHG IRT PSIH LRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIP
Subjt:  PLVSAFLKAPLSFKRI--RGMSSS-----GGILNALATALHGPIRTTPSIHHLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIP

Query:  SAPIVLQLGSFHSLSRVKPWDLTADLKSHLQTLYAQSFRITLASSVLSRLLAQSLLPPCGMLRQAFSHCEKFPTAASRRSLGRVSVPVWLIILSDQLLII
        SAP VL+LGSFH LSRV+PWDLTADLKSHLQTLYAQSFRITLASS      A        +LRQAF+HC KFPTAASRRSLGRVSVPVWLIILSDQLLII
Subjt:  SAPIVLQLGSFHSLSRVKPWDLTADLKSHLQTLYAQSFRITLASSVLSRLLAQSLLPPCGMLRQAFSHCEKFPTAASRRSLGRVSVPVWLIILSDQLLII

Query:  VL-PFPAVVPFPRAGSYALLTRPPLETPLPVQLACVKHAASVHPEPGSNSP
         L PFPAVVP PRAGSYALLTRPPLETPLPV+LACVKHAASVHPEPGSNSP
Subjt:  VL-PFPAVVPFPRAGSYALLTRPPLETPLPVQLACVKHAASVHPEPGSNSP

KZN08616.1 hypothetical protein DCAR_001146 [Daucus carota subsp. sativus]5.0e-9175.4Show/hide
Query:  ARADDSRAPLVSAFLKAPLSFKRIRGMSSSGGILNALATALHGPIRTTPSIHHLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEI
        ARADDS AP VSAF KAPLSFKRIRGMSS GGILNALATALHG IRT PSIH LRLGLLGYLIPFA LAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEI
Subjt:  ARADDSRAPLVSAFLKAPLSFKRIRGMSSSGGILNALATALHGPIRTTPSIHHLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEI

Query:  PSAPIVLQLGSFHSLSRVKPWDLTADLKSHLQTLYAQSFRITLASSVLSRLL-AQSLLPPCGMLRQAFSHCEKFPTAASRRSLGRVSVPVWLIILSDQLL
        PSAP VLQL +   +       L     +  +   A S    +ASS    +    +      +LRQAF+HC KFPTAASRRSLGRVSVPVWLIILSDQLL
Subjt:  PSAPIVLQLGSFHSLSRVKPWDLTADLKSHLQTLYAQSFRITLASSVLSRLL-AQSLLPPCGMLRQAFSHCEKFPTAASRRSLGRVSVPVWLIILSDQLL

Query:  IIVLPFPAVVPFPRAGSYALLTRPPLETPLPVQLACVKHAASVHPEPGSNSP
        II LPFPAVVP PRAGSYALLTRPPLETPLPV+LACVKHAASVHPEPGSNSP
Subjt:  IIVLPFPAVVPFPRAGSYALLTRPPLETPLPVQLACVKHAASVHPEPGSNSP

PPS12483.1 hypothetical protein GOBAR_AA08150 [Gossypium barbadense]2.1e-8171.31Show/hide
Query:  APLVSAFLKAPLSFKRIRGMSSSGGILNALATALHGPIRTTPSIHHLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPIVL
        AP V AF KAPLSFKRI GMSS GGILNALAT  HG IRT                          CQCRPSRVLSPLVFFPISTHFTAP EIPSAP +L
Subjt:  APLVSAFLKAPLSFKRIRGMSSSGGILNALATALHGPIRTTPSIHHLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPIVL

Query:  QLGSFHSLSRVKPWDLTADLKSHLQTLYAQSFRITLASSVLSRLLAQSLLPPCGMLRQAFSHCEKFPTAASRRSLGRVSVPVWLIILSDQLLIIVLPFPA
        QLGSFH LSRV+PWDLTADLKSHLQTLYAQSFRIT ASS                   AF+HCEKFPTAASR+SLG VSVPVWLIILSDQLLII LPFPA
Subjt:  QLGSFHSLSRVKPWDLTADLKSHLQTLYAQSFRITLASSVLSRLLAQSLLPPCGMLRQAFSHCEKFPTAASRRSLGRVSVPVWLIILSDQLLIIVLPFPA

Query:  VVPFPRAGSYALLTRPPLETPLPVQLACVKHAASVHPEPGSNSP
        VVP  RA SYALLTRPPLETPLP++LACVKHAASVH EP SNSP
Subjt:  VVPFPRAGSYALLTRPPLETPLPVQLACVKHAASVHPEPGSNSP

TrEMBL top hitse value%identityAlignment
A0A162A9Q8 Uncharacterized protein2.4e-9175.4Show/hide
Query:  ARADDSRAPLVSAFLKAPLSFKRIRGMSSSGGILNALATALHGPIRTTPSIHHLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEI
        ARADDS AP VSAF KAPLSFKRIRGMSS GGILNALATALHG IRT PSIH LRLGLLGYLIPFA LAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEI
Subjt:  ARADDSRAPLVSAFLKAPLSFKRIRGMSSSGGILNALATALHGPIRTTPSIHHLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEI

Query:  PSAPIVLQLGSFHSLSRVKPWDLTADLKSHLQTLYAQSFRITLASSVLSRLL-AQSLLPPCGMLRQAFSHCEKFPTAASRRSLGRVSVPVWLIILSDQLL
        PSAP VLQL +   +       L     +  +   A S    +ASS    +    +      +LRQAF+HC KFPTAASRRSLGRVSVPVWLIILSDQLL
Subjt:  PSAPIVLQLGSFHSLSRVKPWDLTADLKSHLQTLYAQSFRITLASSVLSRLL-AQSLLPPCGMLRQAFSHCEKFPTAASRRSLGRVSVPVWLIILSDQLL

Query:  IIVLPFPAVVPFPRAGSYALLTRPPLETPLPVQLACVKHAASVHPEPGSNSP
        II LPFPAVVP PRAGSYALLTRPPLETPLPV+LACVKHAASVHPEPGSNSP
Subjt:  IIVLPFPAVVPFPRAGSYALLTRPPLETPLPVQLACVKHAASVHPEPGSNSP

A0A2P5YA66 Uncharacterized protein1.0e-8171.31Show/hide
Query:  APLVSAFLKAPLSFKRIRGMSSSGGILNALATALHGPIRTTPSIHHLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPIVL
        AP V AF KAPLSFKRI GMSS GGILNALAT  HG IRT                          CQCRPSRVLSPLVFFPISTHFTAP EIPSAP +L
Subjt:  APLVSAFLKAPLSFKRIRGMSSSGGILNALATALHGPIRTTPSIHHLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPIVL

Query:  QLGSFHSLSRVKPWDLTADLKSHLQTLYAQSFRITLASSVLSRLLAQSLLPPCGMLRQAFSHCEKFPTAASRRSLGRVSVPVWLIILSDQLLIIVLPFPA
        QLGSFH LSRV+PWDLTADLKSHLQTLYAQSFRIT ASS                   AF+HCEKFPTAASR+SLG VSVPVWLIILSDQLLII LPFPA
Subjt:  QLGSFHSLSRVKPWDLTADLKSHLQTLYAQSFRITLASSVLSRLLAQSLLPPCGMLRQAFSHCEKFPTAASRRSLGRVSVPVWLIILSDQLLIIVLPFPA

Query:  VVPFPRAGSYALLTRPPLETPLPVQLACVKHAASVHPEPGSNSP
        VVP  RA SYALLTRPPLETPLP++LACVKHAASVH EP SNSP
Subjt:  VVPFPRAGSYALLTRPPLETPLPVQLACVKHAASVHPEPGSNSP

A0A5N6NM02 Uncharacterized protein5.1e-8974.49Show/hide
Query:  SRAPLVSAFLKAPLSFKRIRGMSSSGGILNALATALHGPIRTTPSIHHLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPI
        + AP VSAF KAPLSFKRIRGMSS GGILNALATALHG IRT PSIH LRLGLLGYLIPFAPLAFV+QCQCRPSRVLSPLVFFPISTHFTAPPEIPSAP 
Subjt:  SRAPLVSAFLKAPLSFKRIRGMSSSGGILNALATALHGPIRTTPSIHHLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPI

Query:  VLQLGSFHSLSRVKPWDLTADLKSHLQTLYAQSFRITLASSVLSRLL-AQSLLPPCGMLRQAFSHCEKFPTAASRRSLGRVSVPVWLIILSDQLLIIVLP
        VLQL +   +       L     +  +   A S    +ASS    +    +      +LRQAF+HC KFPTAASRRSLGRVSVPVWLIILSDQLLII LP
Subjt:  VLQLGSFHSLSRVKPWDLTADLKSHLQTLYAQSFRITLASSVLSRLL-AQSLLPPCGMLRQAFSHCEKFPTAASRRSLGRVSVPVWLIILSDQLLIIVLP

Query:  FPAVVPFPRAGSYALLTRPPLETPLPVQLACVKHAASVHPEPGSNSP
        FPAVVP PRAGSYALLTRPPLETPLPV+LACVKHAASVHPEPGSNSP
Subjt:  FPAVVPFPRAGSYALLTRPPLETPLPVQLACVKHAASVHPEPGSNSP

A0A5N6PVU4 Uncharacterized protein2.3e-8974.9Show/hide
Query:  SRAPLVSAFLKAPLSFKRIRGMSSSGGILNALATALHGPIRTTPSIHHLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPI
        + AP VSAF KAPLSFKRIRGMSS GGILNALATALHG IRT PSIH LRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAP 
Subjt:  SRAPLVSAFLKAPLSFKRIRGMSSSGGILNALATALHGPIRTTPSIHHLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPI

Query:  VLQLGSFHSLSRVKPWDLTADLKSHLQTLYAQSFRITLASSVLSRLL-AQSLLPPCGMLRQAFSHCEKFPTAASRRSLGRVSVPVWLIILSDQLLIIVLP
        VLQL +   +       L     +  +   A S    +ASS    +    +      +LRQAF+HC KFPTAASRRSLGRVSVPVWLIILSDQLLII LP
Subjt:  VLQLGSFHSLSRVKPWDLTADLKSHLQTLYAQSFRITLASSVLSRLL-AQSLLPPCGMLRQAFSHCEKFPTAASRRSLGRVSVPVWLIILSDQLLIIVLP

Query:  FPAVVPFPRAGSYALLTRPPLETPLPVQLACVKHAASVHPEPGSNSP
        FPAVVP PRAGSYALLTRPPLETPLPV+LACVKHAASVHPEPGSNSP
Subjt:  FPAVVPFPRAGSYALLTRPPLETPLPVQLACVKHAASVHPEPGSNSP

M1DBW2 30S ribosomal protein S12, chloroplastic1.5e-8582.55Show/hide
Query:  APLVSAFLKAPLSFKRIRGMSSSGGILNALATALHGPIRTTPSIHHLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPIVL
        AP VSAF KAPLSFKRIRGMSS GGILNALATALHG IRT PSIH LRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAP VL
Subjt:  APLVSAFLKAPLSFKRIRGMSSSGGILNALATALHGPIRTTPSIHHLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPIVL

Query:  QLGSFHSLSRVKPWDLTADLKSHLQTLYAQSFRITLASSVLSRLLAQSLLPP----------------CGMLRQAFSHCEKFPTAASRRSLGRVSVPVWL
        QLGSFH LSRV+PWDLTADLKSHLQTLYAQSFRITLASSVL RLLAQ+ +                    +LRQAF+HC KFPTAASRRSLGRVSVPVWL
Subjt:  QLGSFHSLSRVKPWDLTADLKSHLQTLYAQSFRITLASSVLSRLLAQSLLPP----------------CGMLRQAFSHCEKFPTAASRRSLGRVSVPVWL

Query:  IILSDQLLIIVL
        IILSDQLLII L
Subjt:  IILSDQLLIIVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACGAGCTGACGATAGCCGTGCACCACTTGTGTCCGCGTTCCTGAAGGCACCCCTCTCTTTCAAGAGGATTCGCGGCATGTCAAGCTCTGGTGGGATACTTAACGC
GTTAGCTACAGCACTGCACGGGCCGATACGCACAACGCCTAGTATCCATCATTTACGGCTAGGACTACTGGGGTATCTAATCCCATTCGCTCCCCTAGCTTTCGTCTCTC
AGTGTCAGTGTCGGCCTAGCAGAGTGCTTTCACCGTTGGTGTTCTTTCCAATCTCTACGCATTTCACCGCTCCACCAGAAATTCCCTCTGCCCCTATCGTACTCCAGCTT
GGTAGTTTCCACAGCCTGTCCAGGGTTAAGCCCTGGGATTTAACTGCAGACTTAAAAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTC
TGTATTATCGCGGCTGCTGGCACAAAGCCTTCTACCTCCATGCGGCATGCTCCGTCAGGCTTTTTCCCATTGCGAAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG
GCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGTCTTGCCGTTTCCAGCTGTTGTTCCCTTCCCAAGGGCAGGTTCTTACGCGTTA
CTCACCCGTCCGCCACTGGAAACACCACTTCCTGTTCAACTTGCGTGTGTTAAGCATGCTGCCAGCGTTCATCCTGAGCCAGGATCGAACTCTCCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCACGAGCTGACGATAGCCGTGCACCACTTGTGTCCGCGTTCCTGAAGGCACCCCTCTCTTTCAAGAGGATTCGCGGCATGTCAAGCTCTGGTGGGATACTTAACGC
GTTAGCTACAGCACTGCACGGGCCGATACGCACAACGCCTAGTATCCATCATTTACGGCTAGGACTACTGGGGTATCTAATCCCATTCGCTCCCCTAGCTTTCGTCTCTC
AGTGTCAGTGTCGGCCTAGCAGAGTGCTTTCACCGTTGGTGTTCTTTCCAATCTCTACGCATTTCACCGCTCCACCAGAAATTCCCTCTGCCCCTATCGTACTCCAGCTT
GGTAGTTTCCACAGCCTGTCCAGGGTTAAGCCCTGGGATTTAACTGCAGACTTAAAAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTC
TGTATTATCGCGGCTGCTGGCACAAAGCCTTCTACCTCCATGCGGCATGCTCCGTCAGGCTTTTTCCCATTGCGAAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG
GCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGTCTTGCCGTTTCCAGCTGTTGTTCCCTTCCCAAGGGCAGGTTCTTACGCGTTA
CTCACCCGTCCGCCACTGGAAACACCACTTCCTGTTCAACTTGCGTGTGTTAAGCATGCTGCCAGCGTTCATCCTGAGCCAGGATCGAACTCTCCATAA
Protein sequenceShow/hide protein sequence
MARADDSRAPLVSAFLKAPLSFKRIRGMSSSGGILNALATALHGPIRTTPSIHHLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPIVLQL
GSFHSLSRVKPWDLTADLKSHLQTLYAQSFRITLASSVLSRLLAQSLLPPCGMLRQAFSHCEKFPTAASRRSLGRVSVPVWLIILSDQLLIIVLPFPAVVPFPRAGSYAL
LTRPPLETPLPVQLACVKHAASVHPEPGSNSP