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HG10019154 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019154
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
Genome locationChr04:17811360..17811872
RNA-Seq ExpressionHG10019154
SyntenyHG10019154
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU49954.1 hypothetical protein TSUD_180180 [Trifolium subterraneum]1.8e-0429.45Show/hide
Query:  LERLEFNNKESIQSVENRCEWILDYVNEFGLVLKETNIFVPSKPMTFDLSMSDRVLIHVDAACKINHPVVGFGAIIGTLSGSIVASIHGFRVSSLSPLCA
        L RL FN +  +++ +N C      V+  G V    + F+  K   F  +     +++VD +C  +    GFG II    G  +A   G+   S   L A
Subjt:  LERLEFNNKESIQSVENRCEWILDYVNEFGLVLKETNIFVPSKPMTFDLSMSDRVLIHVDAACKINHPVVGFGAIIGTLSGSIVASIHGFRVSSLSPLCA

Query:  EAYAIYESLHLAERLGLSRLLVLSDSLSTVQIINDLKEVEVDVANTVMDIRKIYGGFNYLSAC
        E YAIY+ L LA+ +G+  L+  SDSL  + +I   +      A  + DI+++    N +S C
Subjt:  EAYAIYESLHLAERLGLSRLLVLSDSLSTVQIINDLKEVEVDVANTVMDIRKIYGGFNYLSAC

XP_037439691.1 uncharacterized protein LOC119307722 isoform X1 [Triticum dicoccoides]9.1e-0429.66Show/hide
Query:  PSKPMTFDLSMSDRVLIHVDAACKINHPVVGFGAIIGTLSGSIVASIHGFRVSSLSPLCAEAYAIYESLHLAERLGLSRLLVLSDSLSTVQIINDLKEVE
        P+K + +       + ++VDA+  ++      GA++   SG+ +A+   FR  ++     EA A+ E L LAE LG+  L+V SDS   VQ + D  E  
Subjt:  PSKPMTFDLSMSDRVLIHVDAACKINHPVVGFGAIIGTLSGSIVASIHGFRVSSLSPLCAEAYAIYESLHLAERLGLSRLLVLSDSLSTVQIINDLKEVE

Query:  VDVANTVMDIRKIYGGFN
           A    D R++   F+
Subjt:  VDVANTVMDIRKIYGGFN

XP_042974783.1 uncharacterized protein LOC122306422 [Carya illinoinensis]3.1e-0433.65Show/hide
Query:  DAACKINHPVVGFGAIIGTLSGSIVASIHGFRVSSLSPLCAEAYAIYESLHLAERLGLSRLLVLSDSLSTVQIINDLKEVEVDVANTVMDIRKIYGGFNY
        DAA  ++  +VG G II   +G ++A++   R   LSP  AEAYA+  ++  +   G+ +L++  DSL  VQ +  L E        V D RK+   F  
Subjt:  DAACKINHPVVGFGAIIGTLSGSIVASIHGFRVSSLSPLCAEAYAIYESLHLAERLGLSRLLVLSDSLSTVQIINDLKEVEVDVANTVMDIRKIYGGFNY

Query:  LSAC
         S C
Subjt:  LSAC

TrEMBL top hitse value%identityAlignment
A0A2Z6P0N0 Uncharacterized protein8.9e-0529.45Show/hide
Query:  LERLEFNNKESIQSVENRCEWILDYVNEFGLVLKETNIFVPSKPMTFDLSMSDRVLIHVDAACKINHPVVGFGAIIGTLSGSIVASIHGFRVSSLSPLCA
        L RL FN +  +++ +N C      V+  G V    + F+  K   F  +     +++VD +C  +    GFG II    G  +A   G+   S   L A
Subjt:  LERLEFNNKESIQSVENRCEWILDYVNEFGLVLKETNIFVPSKPMTFDLSMSDRVLIHVDAACKINHPVVGFGAIIGTLSGSIVASIHGFRVSSLSPLCA

Query:  EAYAIYESLHLAERLGLSRLLVLSDSLSTVQIINDLKEVEVDVANTVMDIRKIYGGFNYLSAC
        E YAIY+ L LA+ +G+  L+  SDSL  + +I   +      A  + DI+++    N +S C
Subjt:  EAYAIYESLHLAERLGLSRLLVLSDSLSTVQIINDLKEVEVDVANTVMDIRKIYGGFNYLSAC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTATTTGGAGAGATTGGAATTCAACAATAAAGAGTCTATTCAGTCTGTGGAGAACCGATGCGAATGGATTTTGGATTATGTAAACGAGTTTGGTTTGGTTCTGAA
AGAGACAAACATATTTGTTCCCTCGAAGCCGATGACTTTTGACCTTTCTATGAGTGATCGGGTTCTTATTCATGTTGACGCAGCTTGTAAGATTAATCATCCTGTAGTTG
GCTTTGGTGCAATTATTGGTACCCTCTCGGGGTCCATTGTGGCTTCTATTCACGGGTTCAGAGTCTCCTCTTTAAGCCCTTTGTGCGCTGAGGCTTATGCCATTTATGAG
AGCCTTCATTTAGCTGAAAGACTGGGGCTTTCTCGTCTGTTAGTGTTATCTGATTCATTATCTACGGTTCAAATAATCAATGATCTTAAGGAAGTTGAGGTGGATGTTGC
AAACACTGTGATGGATATCCGGAAGATCTATGGGGGCTTCAATTACCTTTCAGCATGTGTCCCAGACTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCTATTTGGAGAGATTGGAATTCAACAATAAAGAGTCTATTCAGTCTGTGGAGAACCGATGCGAATGGATTTTGGATTATGTAAACGAGTTTGGTTTGGTTCTGAA
AGAGACAAACATATTTGTTCCCTCGAAGCCGATGACTTTTGACCTTTCTATGAGTGATCGGGTTCTTATTCATGTTGACGCAGCTTGTAAGATTAATCATCCTGTAGTTG
GCTTTGGTGCAATTATTGGTACCCTCTCGGGGTCCATTGTGGCTTCTATTCACGGGTTCAGAGTCTCCTCTTTAAGCCCTTTGTGCGCTGAGGCTTATGCCATTTATGAG
AGCCTTCATTTAGCTGAAAGACTGGGGCTTTCTCGTCTGTTAGTGTTATCTGATTCATTATCTACGGTTCAAATAATCAATGATCTTAAGGAAGTTGAGGTGGATGTTGC
AAACACTGTGATGGATATCCGGAAGATCTATGGGGGCTTCAATTACCTTTCAGCATGTGTCCCAGACTCATAA
Protein sequenceShow/hide protein sequence
MGYLERLEFNNKESIQSVENRCEWILDYVNEFGLVLKETNIFVPSKPMTFDLSMSDRVLIHVDAACKINHPVVGFGAIIGTLSGSIVASIHGFRVSSLSPLCAEAYAIYE
SLHLAERLGLSRLLVLSDSLSTVQIINDLKEVEVDVANTVMDIRKIYGGFNYLSACVPDS