; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10019168 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019168
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA replication complex GINS protein PSF2
Genome locationChr04:18091440..18094157
RNA-Seq ExpressionHG10019168
SyntenyHG10019168
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0031981 - nuclear lumen (cellular component)
InterPro domainsIPR007257 - DNA replication complex GINS protein Psf2
IPR021151 - GINS subunit, domain A
IPR036224 - GINS, helical bundle-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008462891.1 PREDICTED: DNA replication complex GINS protein PSF2 isoform X1 [Cucumis melo]4.0e-6394.78Show/hide
Query:  SRKKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAI
        S +KLTQILEAER+SQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAI
Subjt:  SRKKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAI

Query:  YKHGNPELIPDQDRMTNVQTQGHDHGQRRPLRRR
        YKHGNPEL+PDQDR+TN+QTQGH+HGQRRPLRRR
Subjt:  YKHGNPELIPDQDRMTNVQTQGHDHGQRRPLRRR

XP_008462892.1 PREDICTED: DNA replication complex GINS protein PSF2 isoform X2 [Cucumis melo]2.0e-6290.78Show/hide
Query:  NARRDDKSRKKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFV
        N R D      LTQILEAER+SQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFV
Subjt:  NARRDDKSRKKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFV

Query:  VRALQAIYKHGNPELIPDQDRMTNVQTQGHDHGQRRPLRRR
        VRALQAIYKHGNPEL+PDQDR+TN+QTQGH+HGQRRPLRRR
Subjt:  VRALQAIYKHGNPELIPDQDRMTNVQTQGHDHGQRRPLRRR

XP_023517317.1 DNA replication complex GINS protein PSF2 isoform X1 [Cucurbita pepo subsp. pepo]2.0e-6294.78Show/hide
Query:  SRKKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAI
        S +KLTQ LEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFV RALQAI
Subjt:  SRKKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAI

Query:  YKHGNPELIPDQDRMTNVQTQGHDHGQRRPLRRR
        YKHGNPEL+PDQ+RMTNVQ+QGHDHGQRRPLRRR
Subjt:  YKHGNPELIPDQDRMTNVQTQGHDHGQRRPLRRR

XP_038905117.1 DNA replication complex GINS protein PSF2 isoform X1 [Benincasa hispida]4.7e-6497.01Show/hide
Query:  SRKKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAI
        S +KLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAI
Subjt:  SRKKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAI

Query:  YKHGNPELIPDQDRMTNVQTQGHDHGQRRPLRRR
        YKHGNPEL+PDQDRMTNVQ QGHDHGQRRPLRRR
Subjt:  YKHGNPELIPDQDRMTNVQTQGHDHGQRRPLRRR

XP_038905120.1 DNA replication complex GINS protein PSF2 isoform X2 [Benincasa hispida]4.7e-6497.01Show/hide
Query:  SRKKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAI
        S +KLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAI
Subjt:  SRKKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAI

Query:  YKHGNPELIPDQDRMTNVQTQGHDHGQRRPLRRR
        YKHGNPEL+PDQDRMTNVQ QGHDHGQRRPLRRR
Subjt:  YKHGNPELIPDQDRMTNVQTQGHDHGQRRPLRRR

TrEMBL top hitse value%identityAlignment
A0A0A0L0R7 Sld5 domain-containing protein6.2e-6295.49Show/hide
Query:  KKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIYK
        +KLTQILEAER+SQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIYK
Subjt:  KKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIYK

Query:  HGNPELIPDQDRMTNVQTQGHDHGQ-RRPLRRR
        HGNPEL+PDQDRMTN+QTQG DHGQ RRPLRRR
Subjt:  HGNPELIPDQDRMTNVQTQGHDHGQ-RRPLRRR

A0A1S3CIF8 DNA replication complex GINS protein PSF29.6e-6390.78Show/hide
Query:  NARRDDKSRKKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFV
        N R D      LTQILEAER+SQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFV
Subjt:  NARRDDKSRKKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFV

Query:  VRALQAIYKHGNPELIPDQDRMTNVQTQGHDHGQRRPLRRR
        VRALQAIYKHGNPEL+PDQDR+TN+QTQGH+HGQRRPLRRR
Subjt:  VRALQAIYKHGNPELIPDQDRMTNVQTQGHDHGQRRPLRRR

A0A1S4E3Y0 DNA replication complex GINS protein PSF21.9e-6394.78Show/hide
Query:  SRKKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAI
        S +KLTQILEAER+SQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAI
Subjt:  SRKKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAI

Query:  YKHGNPELIPDQDRMTNVQTQGHDHGQRRPLRRR
        YKHGNPEL+PDQDR+TN+QTQGH+HGQRRPLRRR
Subjt:  YKHGNPELIPDQDRMTNVQTQGHDHGQRRPLRRR

A0A6J1EAX5 DNA replication complex GINS protein PSF22.8e-6294.03Show/hide
Query:  SRKKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAI
        S +KLTQ LEAERESQGSFQILPFHYVEISKLLFDHAR+DVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFV RALQAI
Subjt:  SRKKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAI

Query:  YKHGNPELIPDQDRMTNVQTQGHDHGQRRPLRRR
        YKHGNPEL+PDQ+RMTNVQ+QGHDHGQRRPLRRR
Subjt:  YKHGNPELIPDQDRMTNVQTQGHDHGQRRPLRRR

A0A6J1HPD8 DNA replication complex GINS protein PSF22.1e-6294.03Show/hide
Query:  SRKKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAI
        S +KLTQ LEAERESQGSFQILPFHYVE+SKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFV RALQAI
Subjt:  SRKKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAI

Query:  YKHGNPELIPDQDRMTNVQTQGHDHGQRRPLRRR
        YKHGNPEL+PDQ+RMTNVQ+QGHDHGQRRPLRRR
Subjt:  YKHGNPELIPDQDRMTNVQTQGHDHGQRRPLRRR

SwissProt top hitse value%identityAlignment
Q6BZ44 DNA replication complex GINS protein PSF22.2e-0832.99Show/hide
Query:  LTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPD-MYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAI
        L +  E E +    F +LP++++EISK+L + A DD+ D  + +RS+I+D+R++R  K    L+ ++   S +++  LS +E+N +RPFV+  +  +
Subjt:  LTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPD-MYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAI

Q7ZT46 DNA replication complex GINS protein PSF21.9e-0731.03Show/hide
Query:  KKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLES-IDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIY
        +KL  I + ER  +    +   +Y+E++KLL +HA D++P    +R+L++D  D R  K+  S +S +  + +  K+ +L+ ME+N +  F   +L  +Y
Subjt:  KKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLES-IDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIY

Query:  K----HGNPELIPDQD
        K      NPE    QD
Subjt:  K----HGNPELIPDQD

Q9C7A8 DNA replication complex GINS protein PSF22.9e-4066.92Show/hide
Query:  LTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIYKHG
        LTQILEAERESQ +FQ LPF YVEI++LLFDHARDD+PDMY+VRSL+EDIRDVR HK+ET+L S    TSAVKI ++SAMEVNIVRPFV+RAL+A YKH 
Subjt:  LTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIYKHG

Query:  NPELIPDQDRMTNVQTQGHDHGQRRPLRRR
         PE   D+D  ++ Q +  ++  RRPLR+R
Subjt:  NPELIPDQDRMTNVQTQGHDHGQRRPLRRR

Q9D600 DNA replication complex GINS protein PSF23.4e-0934.65Show/hide
Query:  KKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSA-VKIKDLSAMEVNIVRPFVVRALQAIY
        +KL Q+ + ER+ +    +   HY+EI+KLL +HA D++P    +R+LI+D+ D R  K+  S +S   +  A  K+ +L+ ME++    F+ +AL  +Y
Subjt:  KKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSA-VKIKDLSAMEVNIVRPFVVRALQAIY

Query:  K
        K
Subjt:  K

Q9Y248 DNA replication complex GINS protein PSF21.1e-0731.68Show/hide
Query:  KKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSA-VKIKDLSAMEVNIVRPFVVRALQAIY
        +KL ++ + ER+ +    +   +Y+E++KLL +HA D++P    +R+L++D+ D R  K+  S +S   +  A  K+ +L+ ME+N    F+ +AL  +Y
Subjt:  KKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSA-VKIKDLSAMEVNIVRPFVVRALQAIY

Query:  K
        K
Subjt:  K

Arabidopsis top hitse value%identityAlignment
AT3G12530.1 PSF22.1e-4166.92Show/hide
Query:  LTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIYKHG
        LTQILEAERESQ +FQ LPF YVEI++LLFDHARDD+PDMY+VRSL+EDIRDVR HK+ET+L S    TSAVKI ++SAMEVNIVRPFV+RAL+A YKH 
Subjt:  LTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIYKHG

Query:  NPELIPDQDRMTNVQTQGHDHGQRRPLRRR
         PE   D+D  ++ Q +  ++  RRPLR+R
Subjt:  NPELIPDQDRMTNVQTQGHDHGQRRPLRRR

AT3G12530.2 PSF22.1e-4166.92Show/hide
Query:  LTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIYKHG
        LTQILEAERESQ +FQ LPF YVEI++LLFDHARDD+PDMY+VRSL+EDIRDVR HK+ET+L S    TSAVKI ++SAMEVNIVRPFV+RAL+A YKH 
Subjt:  LTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIYKHG

Query:  NPELIPDQDRMTNVQTQGHDHGQRRPLRRR
         PE   D+D  ++ Q +  ++  RRPLR+R
Subjt:  NPELIPDQDRMTNVQTQGHDHGQRRPLRRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGATGATTTTCTTCAATGTGGAGTCTTGTTGGCTGTGGGCGTTGCTCAAGCAAAATACCCCAATATTGACTTCCACTTCGTACAATCTGAAATCAATGCCCGACG
AGATGACAAAAGCCGAAAAAAGTTGACACAAATTTTGGAGGCAGAACGAGAGTCTCAAGGATCTTTCCAGATACTACCCTTCCATTACGTGGAAATATCAAAACTTCTTT
TTGACCACGCACGAGATGACGTTCCTGACATGTATTTGGTGAGGTCTCTTATTGAAGATATCAGGGATGTTAGGTTTCACAAAGTTGAAACCAGCTTGGAGTCAATTGAT
ACACGCACATCTGCAGTGAAGATTAAAGATCTATCTGCCATGGAAGTGAATATAGTTCGACCATTTGTCGTTAGAGCGCTGCAAGCGATTTATAAGCATGGAAATCCAGA
GTTGATCCCAGATCAAGATAGGATGACCAATGTGCAGACACAAGGACACGATCACGGACAAAGGCGACCTCTTCGTAGACGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGATGATTTTCTTCAATGTGGAGTCTTGTTGGCTGTGGGCGTTGCTCAAGCAAAATACCCCAATATTGACTTCCACTTCGTACAATCTGAAATCAATGCCCGACG
AGATGACAAAAGCCGAAAAAAGTTGACACAAATTTTGGAGGCAGAACGAGAGTCTCAAGGATCTTTCCAGATACTACCCTTCCATTACGTGGAAATATCAAAACTTCTTT
TTGACCACGCACGAGATGACGTTCCTGACATGTATTTGGTGAGGTCTCTTATTGAAGATATCAGGGATGTTAGGTTTCACAAAGTTGAAACCAGCTTGGAGTCAATTGAT
ACACGCACATCTGCAGTGAAGATTAAAGATCTATCTGCCATGGAAGTGAATATAGTTCGACCATTTGTCGTTAGAGCGCTGCAAGCGATTTATAAGCATGGAAATCCAGA
GTTGATCCCAGATCAAGATAGGATGACCAATGTGCAGACACAAGGACACGATCACGGACAAAGGCGACCTCTTCGTAGACGGTAG
Protein sequenceShow/hide protein sequence
MEDDFLQCGVLLAVGVAQAKYPNIDFHFVQSEINARRDDKSRKKLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESID
TRTSAVKIKDLSAMEVNIVRPFVVRALQAIYKHGNPELIPDQDRMTNVQTQGHDHGQRRPLRRR