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HG10019169 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019169
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA replication complex GINS protein PSF2
Genome locationChr04:18094698..18099088
RNA-Seq ExpressionHG10019169
SyntenyHG10019169
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0031981 - nuclear lumen (cellular component)
InterPro domainsIPR007257 - DNA replication complex GINS protein Psf2
IPR021151 - GINS subunit, domain A


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK07564.1 DNA replication complex GINS protein PSF2 isoform X1 [Cucumis melo var. makuwa]5.1e-3796.25Show/hide
Query:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE
        MAGQSDP +NLFSAEEVEFVAEDEM+EIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE
Subjt:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE

XP_004137154.1 DNA replication complex GINS protein PSF2 [Cucumis sativus]3.5e-3897.5Show/hide
Query:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE
        MAGQSDPH+NLFSAEEVEFVAEDEMVEI+PNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE
Subjt:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE

XP_008462891.1 PREDICTED: DNA replication complex GINS protein PSF2 isoform X1 [Cucumis melo]5.1e-3796.25Show/hide
Query:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE
        MAGQSDP +NLFSAEEVEFVAEDEM+EIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE
Subjt:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE

XP_022925113.1 DNA replication complex GINS protein PSF2 isoform X2 [Cucurbita moschata]5.7e-3693.75Show/hide
Query:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE
        MAGQSDPH+ LFSAEE+EFVAEDEMVEIVPNMRMDSL+LICGDYGPFYPQIATEVPLWLAIALKKRGKCAIR PEWMSVE
Subjt:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE

XP_038905117.1 DNA replication complex GINS protein PSF2 isoform X1 [Benincasa hispida]1.3e-3797.5Show/hide
Query:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE
        MAGQSDPH+NLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIR PEWMSVE
Subjt:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE

TrEMBL top hitse value%identityAlignment
A0A0A0KVY8 Sld5 domain-containing protein8.5e-3897.47Show/hide
Query:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSV
        MAGQSDPH+NLFSAEEVEFVAEDEMVEI+PNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSV
Subjt:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSV

A0A1S4E3Y0 DNA replication complex GINS protein PSF22.5e-3796.25Show/hide
Query:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE
        MAGQSDP +NLFSAEEVEFVAEDEM+EIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE
Subjt:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE

A0A5D3C8I7 DNA replication complex GINS protein PSF2 isoform X12.5e-3796.25Show/hide
Query:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE
        MAGQSDP +NLFSAEEVEFVAEDEM+EIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE
Subjt:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE

A0A6J1HN13 DNA replication complex GINS protein PSF22.7e-3693.75Show/hide
Query:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE
        MAGQSDPH+ LFSAEE+EFVAEDEMVEIVPNMRMDSL+LICGDYGPFYPQIATEVPLWLAIALKKRGKCAIR PEWMSVE
Subjt:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE

A0A6J1HPD8 DNA replication complex GINS protein PSF22.7e-3693.75Show/hide
Query:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE
        MAGQSDPH+ LFSAEE+EFVAEDEMVEIVPNMRMDSL+LICGDYGPFYPQIATEVPLWLAIALKKRGKCAIR PEWMSVE
Subjt:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE

SwissProt top hitse value%identityAlignment
Q54BL9 Probable DNA replication complex GINS protein PSF21.2e-1545.45Show/hide
Query:  EVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEMTPWKSMRQRMI
        ++EF+AED  + +VPN +M+SL  + G+YGPF P    E+PLWLAI+LKK+ KC I  P+WM+      K   +  I
Subjt:  EVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEMTPWKSMRQRMI

Q7ZT46 DNA replication complex GINS protein PSF26.1e-1742.34Show/hide
Query:  AEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE--------------MTPWKSMRQRMIVELGIGT
        A EVEF+AE E V ++PN  +D ++LI GD GPF P +  EVPLWLAI LK+R KC I  PEWM VE               TP  S     + +L +  
Subjt:  AEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE--------------MTPWKSMRQRMIVELGIGT

Query:  STSHAPSTDSI
        +  + P  D I
Subjt:  STSHAPSTDSI

Q9C7A8 DNA replication complex GINS protein PSF23.5e-2868.75Show/hide
Query:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE
        MAGQ+DPH++LFS +EVEF+AEDE+VEIVPNM M+ L+ I GD+G F PQI T+VPLWLA+ALK+RGKC  R P WMSV+
Subjt:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE

Q9D600 DNA replication complex GINS protein PSF24.7e-1742.34Show/hide
Query:  AEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE--------------MTPWKSMRQRMIVELGIGT
        A EVEF+AE E+V I+PN  +D ++LI GD GPF P +  +VPLWLAI LK+R KC +  PEWM VE               TP  S     I +L +  
Subjt:  AEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE--------------MTPWKSMRQRMIVELGIGT

Query:  STSHAPSTDSI
        ++ + P  D+I
Subjt:  STSHAPSTDSI

Q9Y248 DNA replication complex GINS protein PSF24.7e-1742.34Show/hide
Query:  AEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE--------------MTPWKSMRQRMIVELGIGT
        A EVEF+AE E+V I+PN  +D ++LI GD GPF P +  EVPLWLAI LK+R KC +  PEWM VE               TP  S     + +L +  
Subjt:  AEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE--------------MTPWKSMRQRMIVELGIGT

Query:  STSHAPSTDSI
        ++ + P  D I
Subjt:  STSHAPSTDSI

Arabidopsis top hitse value%identityAlignment
AT3G12530.1 PSF22.5e-2968.75Show/hide
Query:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE
        MAGQ+DPH++LFS +EVEF+AEDE+VEIVPNM M+ L+ I GD+G F PQI T+VPLWLA+ALK+RGKC  R P WMSV+
Subjt:  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE

AT3G12530.2 PSF26.1e-2067.21Show/hide
Query:  VAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE
        +AEDE+VEIVPNM M+ L+ I GD+G F PQI T+VPLWLA+ALK+RGKC  R P WMSV+
Subjt:  VAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGGTCAATCAGATCCTCACGTGAACCTATTTTCTGCAGAAGAGGTCGAGTTTGTAGCTGAAGATGAAATGGTGGAGATTGTTCCTAATATGAGAATGGATTCTCT
GCATTTGATCTGTGGGGATTATGGTCCATTCTATCCCCAAATAGCAACTGAAGTTCCATTGTGGCTAGCGATTGCTTTGAAAAAAAGAGGGAAATGTGCAATTAGGACTC
CAGAGTGGATGTCAGTAGAAATGACTCCCTGGAAGTCCATGCGCCAGAGAATGATTGTCGAATTGGGGATTGGCACATCCACTTCTCATGCTCCTTCTACTGACTCAATT
CCAATAATTTCTTCTATGGGCGCTCCAACCTGGATTCACCCAATCCATGTTTCATTTGAAGAGCCACCTTCTCGATGCTCATGCCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGGTCAATCAGATCCTCACGTGAACCTATTTTCTGCAGAAGAGGTCGAGTTTGTAGCTGAAGATGAAATGGTGGAGATTGTTCCTAATATGAGAATGGATTCTCT
GCATTTGATCTGTGGGGATTATGGTCCATTCTATCCCCAAATAGCAACTGAAGTTCCATTGTGGCTAGCGATTGCTTTGAAAAAAAGAGGGAAATGTGCAATTAGGACTC
CAGAGTGGATGTCAGTAGAAATGACTCCCTGGAAGTCCATGCGCCAGAGAATGATTGTCGAATTGGGGATTGGCACATCCACTTCTCATGCTCCTTCTACTGACTCAATT
CCAATAATTTCTTCTATGGGCGCTCCAACCTGGATTCACCCAATCCATGTTTCATTTGAAGAGCCACCTTCTCGATGCTCATGCCTCTAA
Protein sequenceShow/hide protein sequence
MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEMTPWKSMRQRMIVELGIGTSTSHAPSTDSI
PIISSMGAPTWIHPIHVSFEEPPSRCSCL