CuGenDBv2

Gene ID	HG10019203
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Tubulin alpha chain
Genome location	Chr04:18630194..18636183
RNA-Seq Expression	HG10019203
Synteny	HG10019203
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6576903.1 hypothetical protein SDJN03_24477, partial [Cucurbita argyrosperma subsp. sororia]

3.0e-108

91.89

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Query:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDTDKESNGEEPPESLFMKELKKRGITPTSLLEDANN
        MA LQILKSTVSPPSISQP FG+QSSRFFSELDSTRRF LLHGRRRS+RYGCV RRLSFRC+AQD+DKESNGEEPPESLFMKELKKRGITPTSLLED +N
Subjt:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDTDKESNGEEPPESLFMKELKKRGITPTSLLEDANN

Query:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP
        +DFGLGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFF GPSFVHD +KTPISPP
Subjt:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISQIAPRVN
        PYVDPYALLEDERISQ+APRVN
Subjt:  PYVDPYALLEDERISQIAPRVN

XP_022922737.1 uncharacterized protein LOC111430640 [Cucurbita moschata]

6.8e-108

91.44

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Query:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDTDKESNGEEPPESLFMKELKKRGITPTSLLEDANN
        MA LQILKSTVSPPSISQP FG+QSSRFFSELDSTRRF LLHGRRRS+RYGCV RRLSFRC+AQD+DKESNGEEPPESLFMKELKKRGITPTSLLED +N
Subjt:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDTDKESNGEEPPESLFMKELKKRGITPTSLLEDANN

Query:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP
        +DFGLGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFF GPSFVHD +KTPISPP
Subjt:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISQIAPRVN
        PYVDPYALLEDER+SQ+APRVN
Subjt:  PYVDPYALLEDERISQIAPRVN

XP_022984914.1 uncharacterized protein LOC111483048 [Cucurbita maxima]

1.0e-108

92.34

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Query:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDTDKESNGEEPPESLFMKELKKRGITPTSLLEDANN
        MA LQILKSTVSPPSISQP FG+QSSRFFSELDSTRRFVLLHGRRRS+RYGCV RRLSFRC+AQD+DKESNGEEPPESLFMKELKKRGITPTSLLED +N
Subjt:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDTDKESNGEEPPESLFMKELKKRGITPTSLLEDANN

Query:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP
        +DFGLGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFF GPSFVHD +KTPISPP
Subjt:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISQIAPRVN
        PYVDPYALLEDERISQ+APRVN
Subjt:  PYVDPYALLEDERISQIAPRVN

XP_023552655.1 uncharacterized protein LOC111810239 [Cucurbita pepo subsp. pepo]

5.2e-108

91.89

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Query:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDTDKESNGEEPPESLFMKELKKRGITPTSLLEDANN
        MA LQILKSTVSPPSISQP FG+QSSRFF ELDSTRRFVLLHGRRRS+RYGCV RRLSFRC+AQD+DKESNGEEPPESLFMKELKKRGITPTSLLED +N
Subjt:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDTDKESNGEEPPESLFMKELKKRGITPTSLLEDANN

Query:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP
        +DFGLGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFF GPSFVHD +KTPISPP
Subjt:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISQIAPRVN
        PYVDPYALLEDERISQ+APRVN
Subjt:  PYVDPYALLEDERISQIAPRVN

XP_038905067.1 uncharacterized protein LOC120091218 isoform X1 [Benincasa hispida]

1.0e-108

92.79

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Query:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDTDKESNGEEPPESLFMKELKKRGITPTSLLEDANN
        MAALQILKSTVSPPSISQPNFG QSSRFFS+LDSTRRFVLLHGRRRS+RYGCVCRRLSFRC+AQD DK+SNGEEPPESLFMKELKKRGITPTSLLED NN
Subjt:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDTDKESNGEEPPESLFMKELKKRGITPTSLLEDANN

Query:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP
        SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI+ITVSFFFALYFFFG SFVHD S+T ISPP
Subjt:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISQIAPRVN
         YVDPYALLE+ERISQ AP VN
Subjt:  PYVDPYALLEDERISQIAPRVN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BY38 uncharacterized protein LOC103494832

3.3e-100

87.39

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Query:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDTDKESNGEEPPESLFMKELKKRGITPTSLLEDANN
        MA+LQILKST+S PSIS PNFG+QS+RFFS+ DS    +LLHGRRRS+R  CVCRR SFRC+A+D DKESNGEEPPESLFMKELKKRGITPTSLLED NN
Subjt:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDTDKESNGEEPPESLFMKELKKRGITPTSLLEDANN

Query:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP
        SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI+ITVSFFF LYFFFG SF+HD  KTPISPP
Subjt:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISQIAPRVN
        PYVDPYALLEDERISQIAP VN
Subjt:  PYVDPYALLEDERISQIAPRVN

A0A6J1D5D9 uncharacterized protein LOC111017763

8.4e-104

89.19

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Query:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDTDKESNGEEPPESLFMKELKKRGITPTSLLEDANN
        MAALQ+LKS VSP SISQPNFG +SSRF S+ DSTRRFV  HGRRRS+RYGCVCRRLSFRC+AQD DKESNGEEPPESLFMKELKKRG+TPTSLLED+N+
Subjt:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDTDKESNGEEPPESLFMKELKKRGITPTSLLEDANN

Query:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP
        +DFGLGGEMTGE RDFS RSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVH+  +TPISPP
Subjt:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISQIAPRVN
        PYVDPYALLEDERISQ APRVN
Subjt:  PYVDPYALLEDERISQIAPRVN

A0A6J1E457 uncharacterized protein LOC111430640

3.3e-108

91.44

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Query:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDTDKESNGEEPPESLFMKELKKRGITPTSLLEDANN
        MA LQILKSTVSPPSISQP FG+QSSRFFSELDSTRRF LLHGRRRS+RYGCV RRLSFRC+AQD+DKESNGEEPPESLFMKELKKRGITPTSLLED +N
Subjt:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDTDKESNGEEPPESLFMKELKKRGITPTSLLEDANN

Query:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP
        +DFGLGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFF GPSFVHD +KTPISPP
Subjt:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISQIAPRVN
        PYVDPYALLEDER+SQ+APRVN
Subjt:  PYVDPYALLEDERISQIAPRVN

A0A6J1JBV1 uncharacterized protein LOC111483048

5.1e-109

92.34

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Query:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDTDKESNGEEPPESLFMKELKKRGITPTSLLEDANN
        MA LQILKSTVSPPSISQP FG+QSSRFFSELDSTRRFVLLHGRRRS+RYGCV RRLSFRC+AQD+DKESNGEEPPESLFMKELKKRGITPTSLLED +N
Subjt:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDTDKESNGEEPPESLFMKELKKRGITPTSLLEDANN

Query:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP
        +DFGLGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFF GPSFVHD +KTPISPP
Subjt:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISQIAPRVN
        PYVDPYALLEDERISQ+APRVN
Subjt:  PYVDPYALLEDERISQIAPRVN

A0A6J1JUF8 uncharacterized protein LOC111488465 isoform X1

3.2e-95

83.78

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Query:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDTDKESNGEEPPESLFMKELKKRGITPTSLLEDANN
        MAALQILKSTVS  S SQ +FG QSSRFF+ELDS+RR V  HGRRRS+RYGCVCRRLSFRC+AQD+ KESNGEEPPESLFMKELKKRGITPTSLLED  +
Subjt:  MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDTDKESNGEEPPESLFMKELKKRGITPTSLLEDANN

Query:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP
        ++F LGGE TGEN DFS  SAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLT+GGTFFLGFWPLIVITV+FFFA YFFFG SFVHD ++TP SPP
Subjt:  SDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISQIAPRVN
        PYV PYA LEDERISQIAPRVN
Subjt:  PYVDPYALLEDERISQIAPRVN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G50020.1 unknown protein

1.4e-50

65.61

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Query:  DKESNGEEPPESLFMKELKKRGITPTSLLEDAN-NSDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLG
        D +S GEEPPESLFMKELK+RG+TPTSLL+D   + D    G+ TG +   S+ +A +   +KSL NQRERS+ LNSEGLEGLIPRA++LLTIGGTFFLG
Subjt:  DKESNGEEPPESLFMKELKKRGITPTSLLEDAN-NSDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLG

Query:  FWPLIVITVSFFFALYFFFGPSFVHDASKTPISPPPYVDPYALLEDERISQIAPRVN
        FWPLIV+T+  F ALY +FG  F+HD S+TP+SPPPY+DPYALLEDERIS + PR+N
Subjt:  FWPLIVITVSFFFALYFFFGPSFVHDASKTPISPPPYVDPYALLEDERISQIAPRVN

Sequences

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CDS sequence

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ATGGCTGCTCTGCAAATTCTCAAATCAACTGTCTCTCCTCCTTCGATCTCTCAGCCGAATTTTGGCGCACAATCAAGCCGGTTCTTCTCGGAGTTGGATTCCACCAGGAG
GTTTGTACTGCTTCATGGACGTCGGAGGAGTATGCGATATGGCTGCGTTTGTAGAAGGTTGAGTTTCCGTTGCTCTGCTCAGGATACTGATAAGGAAAGCAATGGAGAAG
AACCTCCAGAATCATTATTCATGAAGGAACTGAAGAAGAGAGGTATAACTCCCACTTCCTTGCTTGAGGATGCTAACAACAGTGACTTTGGACTTGGTGGCGAGATGACT
GGAGAAAACAGAGATTTTTCCCGTAGAAGTGCTGTTTCAACTGAAGTTAACAAGAGCCTGTCCAATCAAAGGGAGCGTTCCATGCAATTGAACAGTGAAGGCCTTGAGGG
GTTGATCCCTCGTGCTAAACTTTTGCTAACAATTGGAGGAACGTTCTTCTTAGGATTCTGGCCATTGATCGTCATTACTGTTTCGTTCTTTTTTGCTTTATACTTTTTTT
TTGGACCATCTTTTGTTCATGATGCCAGCAAAACTCCAATATCTCCTCCACCGTACGTTGATCCATATGCTCTTTTAGAGGACGAGAGAATTTCACAAATAGCTCCTCGC
GTAAATTGA

mRNA sequence

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Protein sequence

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MAALQILKSTVSPPSISQPNFGAQSSRFFSELDSTRRFVLLHGRRRSMRYGCVCRRLSFRCSAQDTDKESNGEEPPESLFMKELKKRGITPTSLLEDANNSDFGLGGEMT
GENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDASKTPISPPPYVDPYALLEDERISQIAPR
VN

HG10019203 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome