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HG10019240 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019240
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionHistone deacetylase 6
Genome locationChr04:19144204..19144678
RNA-Seq ExpressionHG10019240
SyntenyHG10019240
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600290.1 Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. sororia]6.9e-1979.03Show/hide
Query:  MVKEAGSSSSNPLPLILEEEVEEELLYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCSE
        M  EAGSSSSNP P ++EEEV EE LYGAESGWVEALTSCDHL SL SDL HIPPPDT C E
Subjt:  MVKEAGSSSSNPLPLILEEEVEEELLYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCSE
KAG7030950.1 Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. argyrosperma]6.9e-1979.03Show/hide
Query:  MVKEAGSSSSNPLPLILEEEVEEELLYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCSE
        M  EAGSSSSNP P ++EEEV EE LYGAESGWVEALTSCDHL SL SDL HIPPPDT C E
Subjt:  MVKEAGSSSSNPLPLILEEEVEEELLYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCSE
TYK29477.1 histone deacetylase 6 [Cucumis melo var. makuwa]2.6e-1877.94Show/hide
Query:  MVKEAGSSS--SNPLPLI--LEEEVEEELLYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCSEEL
        M +EAGSSS  SN LPLI  +E+EVEEELLYGA SGWV+ALTSCDHLASLSSDL HIPPP TPCS+ L
Subjt:  MVKEAGSSS--SNPLPLI--LEEEVEEELLYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCSEEL
XP_004152271.1 histone deacetylase 6 [Cucumis sativus]9.1e-1979.69Show/hide
Query:  MVKEAGSSS--SNPLPLILEEEVEEELLYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCSE
        M ++AGSSS  SNPL LI+E+EVEEELLYGA SGWV+ALTSCDHLASLSSDL HIPPP TPCS+
Subjt:  MVKEAGSSS--SNPLPLILEEEVEEELLYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCSE
XP_038904979.1 histone deacetylase 6 [Benincasa hispida]6.1e-2391.94Show/hide
Query:  MVKEAGSSSSNPLPLILEEEVEEELLYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCSE
        M KEAGSSSSNPLPLILEEEVEEELLYGAESGWVEALTSCDHLA LS DL HIPPPD PCSE
Subjt:  MVKEAGSSSSNPLPLILEEEVEEELLYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCSE
TrEMBL top hitse value%identityAlignment
A0A0A0KT14 UBP-type domain-containing protein4.4e-1979.69Show/hide
Query:  MVKEAGSSS--SNPLPLILEEEVEEELLYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCSE
        M ++AGSSS  SNPL LI+E+EVEEELLYGA SGWV+ALTSCDHLASLSSDL HIPPP TPCS+
Subjt:  MVKEAGSSS--SNPLPLILEEEVEEELLYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCSE
A0A1S3BZ94 histone deacetylase 64.9e-1878.79Show/hide
Query:  MVKEAGSSS--SNPLPLI--LEEEVEEELLYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCSE
        M +EAGSSS  SN LPLI  +E+EVEEELLYGA SGWV+ALTSCDHLASLSSDL HIPPP TPCS+
Subjt:  MVKEAGSSS--SNPLPLI--LEEEVEEELLYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCSE
A0A5A7TNA2 Histone deacetylase 64.9e-1878.79Show/hide
Query:  MVKEAGSSS--SNPLPLI--LEEEVEEELLYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCSE
        M +EAGSSS  SN LPLI  +E+EVEEELLYGA SGWV+ALTSCDHLASLSSDL HIPPP TPCS+
Subjt:  MVKEAGSSS--SNPLPLI--LEEEVEEELLYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCSE
A0A5D3E014 Histone deacetylase 61.3e-1877.94Show/hide
Query:  MVKEAGSSS--SNPLPLI--LEEEVEEELLYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCSEEL
        M +EAGSSS  SN LPLI  +E+EVEEELLYGA SGWV+ALTSCDHLASLSSDL HIPPP TPCS+ L
Subjt:  MVKEAGSSS--SNPLPLI--LEEEVEEELLYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCSEEL
A0A6J1D695 histone deacetylase 61.7e-1575.81Show/hide
Query:  MVKEAGSSSSNPLPLILEEEVEEELLYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCSE
        M  EAGSSSSN  P I+EEE EE+ L+GAE+GWVEALT CDHLASLSSDL HIP PDT CSE
Subjt:  MVKEAGSSSSNPLPLILEEEVEEELLYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCSE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G14830.1 Regulator of Vps4 activity in the MVB pathway protein1.3e-1050.82Show/hide
Query:  MVKEAGSSSSNPLPLILEEEVEEELLYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCS
        M ++A SSSS+  P     +  ++ + GA SGWVEA  +CDHL +LS DL H+P PDTPCS
Subjt:  MVKEAGSSSSNPLPLILEEEVEEELLYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCS
AT2G14830.2 Regulator of Vps4 activity in the MVB pathway protein1.3e-1050.82Show/hide
Query:  MVKEAGSSSSNPLPLILEEEVEEELLYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCS
        M ++A SSSS+  P     +  ++ + GA SGWVEA  +CDHL +LS DL H+P PDTPCS
Subjt:  MVKEAGSSSSNPLPLILEEEVEEELLYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAAGAAGCCGGCTCGTCTTCTTCCAACCCACTGCCACTCATACTCGAAGAAGAAGTTGAAGAAGAACTCTTATACGGCGCCGAATCGGGATGGGTTGAA
GCTCTAACTTCTTGCGATCATCTCGCTTCGCTATCTTCCGACCTCACTCACATTCCGCCCCCTGATACTCCCTGCAGCGAGGAACTTTCAATTTCTGCAATTTTC
AGTTTGATTTCCATTTCTGGTGAGAACATTGCTGATGGAAGATGTGCTAAATTGATGTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAAAGAAGCCGGCTCGTCTTCTTCCAACCCACTGCCACTCATACTCGAAGAAGAAGTTGAAGAAGAACTCTTATACGGCGCCGAATCGGGATGGGTTGAA
GCTCTAACTTCTTGCGATCATCTCGCTTCGCTATCTTCCGACCTCACTCACATTCCGCCCCCTGATACTCCCTGCAGCGAGGAACTTTCAATTTCTGCAATTTTC
AGTTTGATTTCCATTTCTGGTGAGAACATTGCTGATGGAAGATGTGCTAAATTGATGTTTTGA
Protein sequenceShow/hide protein sequence
MVKEAGSSSSNPLPLILEEEVEEELLYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCSEELSISAIFSLISISGENIADGRCAKLMF