; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10019241 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019241
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUBP-type domain-containing protein
Genome locationChr04:19146428..19146811
RNA-Seq ExpressionHG10019241
SyntenyHG10019241
Gene Ontology termsGO:0009958 - positive gravitropism (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001607 - Zinc finger, UBP-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044348.1 histone deacetylase 6 [Cucumis melo var. makuwa]4.9e-4188.64Show/hide
Query:  QSTYARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPPLR
        Q+  ++CQ+PKENWLCLCCKDVFCSRFV+KHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQ IQELRPVHEVAYILKFGE PP R
Subjt:  QSTYARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPPLR
KAG7030950.1 Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. argyrosperma]7.6e-4289.89Show/hide
Query:  EQSTYARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPPLR
        EQSTYARC++PKENWLCLCCK+VFCSRFV+KHMLQHY+QS H LALSYSDLSVWCFSCDAYLDAQ IQELRPVHEVAYILKFGEAPP R
Subjt:  EQSTYARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPPLR
XP_004152271.1 histone deacetylase 6 [Cucumis sativus]3.8e-4188.64Show/hide
Query:  QSTYARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPPLR
        Q+  ++CQ+PKENW+CLCCKDVFCSRFV+KHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQ IQELRPVHEVAYILKFGEAPP R
Subjt:  QSTYARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPPLR
XP_008454385.1 PREDICTED: histone deacetylase 6 [Cucumis melo]1.7e-4189.77Show/hide
Query:  QSTYARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPPLR
        Q+  ++CQ+PKENWLCLCCKDVFCSRFV+KHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQ IQELRPVHEVAYILKFGEAPP R
Subjt:  QSTYARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPPLR
XP_038904979.1 histone deacetylase 6 [Benincasa hispida]4.6e-3990.48Show/hide
Query:  ARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPPLR
        + CQ+PKENWLCL CKDVFCSRFV+KHMLQHYEQ THCLALSYSDLSVWCFSCDAYLDAQ IQELRPVHEVAYILKFGEAPP R
Subjt:  ARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPPLR
TrEMBL top hitse value%identityAlignment
A0A0A0KT14 UBP-type domain-containing protein1.8e-4188.64Show/hide
Query:  QSTYARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPPLR
        Q+  ++CQ+PKENW+CLCCKDVFCSRFV+KHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQ IQELRPVHEVAYILKFGEAPP R
Subjt:  QSTYARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPPLR
A0A1S3BZ94 histone deacetylase 68.2e-4289.77Show/hide
Query:  QSTYARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPPLR
        Q+  ++CQ+PKENWLCLCCKDVFCSRFV+KHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQ IQELRPVHEVAYILKFGEAPP R
Subjt:  QSTYARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPPLR
A0A2I4H7I2 histone deacetylase 69.4e-3884.34Show/hide
Query:  RCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPPLR
        RCQ P ENWLCLCCK+V CSRFV+KHMLQHY+Q+ HCLALSYSDLS+WCFSCDAYLDAQ IQ+LRPVHE+AYILKFGEAPP R
Subjt:  RCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPPLR
A0A5A7TNA2 Histone deacetylase 62.4e-4188.64Show/hide
Query:  QSTYARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPPLR
        Q+  ++CQ+PKENWLCLCCKDVFCSRFV+KHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQ IQELRPVHEVAYILKFGE PP R
Subjt:  QSTYARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPPLR
A0A6J1D695 histone deacetylase 68.5e-3986.9Show/hide
Query:  ARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPPLR
        + CQ+PKENWLCLCCK++ CSRFV+KHMLQHY+QSTHCLALSYSDLSVWCFSCDAYLDAQ IQELRPV+EVAYILKFGEAPP R
Subjt:  ARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPPLR
SwissProt top hitse value%identityAlignment
D2HBJ8 Ubiquitin carboxyl-terminal hydrolase 442.6e-0832Show/hide
Query:  CQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY-LDAQAIQELRPVHEVAYILK
        C   +  W CL C  V C R++ +H L+H+++S+H +AL  +++ V+C+ CD Y L+  A  +L+ +  +   +K
Subjt:  CQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY-LDAQAIQELRPVHEVAYILK
Q20296 Histone deacetylase 62.2e-1242.68Show/hide
Query:  ARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPP
        + CQ   E W CL C    C RFV++H + H+  S+H +ALS +DLSVWC+ CD+Y+   A   L      A+  KFGE  P
Subjt:  ARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPP
Q54QE6 NAD-dependent deacetylase sir2A9.4e-1145.45Show/hide
Query:  CQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYL
        C D  ENW+C+ C  V CSR V+ H  +H+E + H ++ S+SD S WC++CD Y+
Subjt:  CQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYL
Q9UBN7 Histone deacetylase 67.5e-1647.5Show/hide
Query:  CQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPP
        C   +ENW+CL C  V+C R+++ HMLQH+  S H L LSY DLS WC+ C AY+  QA+ +   V  +A+  KFGE  P
Subjt:  CQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPP
Q9Z2V5 Histone deacetylase 61.4e-1446.25Show/hide
Query:  CQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPP
        C   +ENW+CL C  V+CSR+V+ HM+ H+E S H L LS  DLS WC+ C AY+  + +Q+   V   A+  KFGE  P
Subjt:  CQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPP
Arabidopsis top hitse value%identityAlignment
AT2G14830.2 Regulator of Vps4 activity in the MVB pathway protein3.5e-3775.9Show/hide
Query:  ARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPPL
        +RCQ+P ENWLCLCCK+V CSRFV++HML H++Q+ HCLALSYSDLSVWCF C+AYLDAQ I +LRP+H+ AYILKFGEAPPL
Subjt:  ARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPPL
AT2G26000.1 zinc finger (C3HC4-type RING finger) family protein1.4e-0632.26Show/hide
Query:  EQSTYARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYL
        E S    CQ  +  W+C+ C  V C R+   H  +H+E++ HC +L      VW ++ D Y+
Subjt:  EQSTYARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYL
AT2G26000.2 zinc finger (C3HC4-type RING finger) family protein1.4e-0632.26Show/hide
Query:  EQSTYARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYL
        E S    CQ  +  W+C+ C  V C R+   H  +H+E++ HC +L      VW ++ D Y+
Subjt:  EQSTYARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACAATCTACATATGCAAGATGTCAGGATCCCAAAGAGAATTGGCTGTGCTTATGCTGTAAGGATGTCTTCTGTAGTCGTTTTGTGAGTAAGCACATGCTTCAACA
TTATGAGCAATCAACTCATTGCCTTGCACTCAGCTACAGTGATTTGTCGGTTTGGTGTTTCTCCTGCGACGCATATTTAGATGCACAAGCGATTCAGGAATTACGACCAG
TACACGAAGTTGCCTATATACTGAAATTTGGCGAGGCCCCGCCACTTCGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAACAATCTACATATGCAAGATGTCAGGATCCCAAAGAGAATTGGCTGTGCTTATGCTGTAAGGATGTCTTCTGTAGTCGTTTTGTGAGTAAGCACATGCTTCAACA
TTATGAGCAATCAACTCATTGCCTTGCACTCAGCTACAGTGATTTGTCGGTTTGGTGTTTCTCCTGCGACGCATATTTAGATGCACAAGCGATTCAGGAATTACGACCAG
TACACGAAGTTGCCTATATACTGAAATTTGGCGAGGCCCCGCCACTTCGATAG
Protein sequenceShow/hide protein sequence
MEQSTYARCQDPKENWLCLCCKDVFCSRFVSKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQAIQELRPVHEVAYILKFGEAPPLR