CuGenDBv2

Gene ID	HG10019246
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Mediator of RNA polymerase II transcription subunit 28
Genome location	Chr04:19173523..19175233
RNA-Seq Expression	HG10019246
Synteny	HG10019246
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR034456 - Mediator of RNA polymerase II transcription subunit 28

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004152267.1 mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus]

6.5e-64

93.62

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Query:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQP+DQQH LDPQ QSSQ PREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDQPNNELEKV
        AIEEELK+KN+IIKKQE+LIEGWKKDLKDQLD+ NNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDQPNNELEKV

XP_008454378.1 PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo]

2.9e-64

95.04

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Query:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ LDQQH LDPQSQSSQ PREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDQPNNELEKV
        AIEEELK+KNDIIKKQERLIEGWKKDLK+QLD+ NNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDQPNNELEKV

XP_022149222.1 mediator of RNA polymerase II transcription subunit 28 [Momordica charantia]

8.0e-62

91.49

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Query:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MA+RQP+DQQH LDPQ QS Q PREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDQPNNELEKV
        AIEEELKLKNDIIKK ERLIEGWKKDLKDQL + NNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDQPNNELEKV

XP_022922953.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata]

4.2e-63

92.2

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Query:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQ+ +DPQ QSSQ PREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDQPNNELEKV
        AIEEELKLK+DIIKKQERLIEGWKKDLKDQLD+ NNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDQPNNELEKV

XP_038904970.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida]

3.5e-65

95.74

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Query:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQHPLDPQ QSSQ PREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDQPNNELEKV
        AIEEELKLKN+IIKKQERLIEGWKKDLKDQLD+ NNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDQPNNELEKV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT19 Uncharacterized protein

3.2e-64

93.62

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Query:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQP+DQQH LDPQ QSSQ PREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDQPNNELEKV
        AIEEELK+KN+IIKKQE+LIEGWKKDLKDQLD+ NNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDQPNNELEKV

A0A1S3BZ89 mediator of RNA polymerase II transcription subunit 28

1.4e-64

95.04

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Query:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ LDQQH LDPQSQSSQ PREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDQPNNELEKV
        AIEEELK+KNDIIKKQERLIEGWKKDLK+QLD+ NNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDQPNNELEKV

A0A5A7TRZ8 Mediator of RNA polymerase II transcription subunit 28

1.4e-64

95.04

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Query:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ LDQQH LDPQSQSSQ PREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDQPNNELEKV
        AIEEELK+KNDIIKKQERLIEGWKKDLK+QLD+ NNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDQPNNELEKV

A0A6J1E897 mediator of RNA polymerase II transcription subunit 28

2.0e-63

92.2

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Query:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQ+ +DPQ QSSQ PREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDQPNNELEKV
        AIEEELKLK+DIIKKQERLIEGWKKDLKDQLD+ NNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDQPNNELEKV

A0A6J1JAT8 mediator of RNA polymerase II transcription subunit 28

2.0e-63

92.2

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Query:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQ+ +DPQ QSSQ PREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDQPNNELEKV
        AIEEELKLK+DIIKKQERLIEGWKKDLKDQLD+ NNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDQPNNELEKV

SwissProt top hits

e value

%identity

Alignment

Q9LFA5 Mediator of RNA polymerase II transcription subunit 28

4.1e-37

67.8

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Query:  EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKLKNDIIKKQERLIEGW
        ED++A V ALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEELK K+++IKK  RL +  
Subjt:  EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKLKNDIIKKQERLIEGW

Query:  KKDLKDQLDQPNNELEKV
        +K +K+Q+++  +ELEKV
Subjt:  KKDLKDQLDQPNNELEKV

Arabidopsis top hits

e value

%identity

Alignment

AT3G52860.1 unknown protein

2.9e-38

67.8

Show/hide

Query:  EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKLKNDIIKKQERLIEGW
        ED++A V ALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEELK K+++IKK  RL +  
Subjt:  EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKLKNDIIKKQERLIEGW

Query:  KKDLKDQLDQPNNELEKV
        +K +K+Q+++  +ELEKV
Subjt:  KKDLKDQLDQPNNELEKV

Sequences

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CDS sequence

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ATGGCTGAACGACAGCCACTCGACCAACAACATCCACTTGATCCACAATCGCAATCATCACAACCTCCAAGAGAAGATATGATTGCATATGTGATGGCTTTGGAAGCTGC
TCTGCTTCCATGCTTGCCTGCAAGAGAACTACAAGCAATAGACCGTTCTCCTCACCCTTCTCATCAAGTTGACGTGGAAAGACATGCTAGGGATTTCATGGAGGCAGCTA
AAAAGCTTCAATTGTATTTCATTGGTTTACAACGCGAGGATCAACCAACCAAAGTGGAAACACTTAGAAAGGAGATATCTGCCATTGAGGAGGAATTAAAGTTAAAGAAT
GACATAATCAAGAAGCAGGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAAGACCAGTTAGACCAACCTAACAATGAGTTAGAGAAGGTTTAA

mRNA sequence

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Protein sequence

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MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKN
DIIKKQERLIEGWKKDLKDQLDQPNNELEKV

HG10019246 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome