CuGenDBv2

Gene ID	HG10019283
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Genome location	Chr04:19760788..19766517
RNA-Seq Expression	HG10019283
Synteny	HG10019283
Gene Ontology terms	GO:0010270 - photosystem II oxygen evolving complex assembly (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR011990 - Tetratricopeptide-like helical domain superfamily IPR019734 - Tetratricopeptide repeat IPR021883 - Protein LOW PSII ACCUMULATION 1-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004152258.2 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus]

7.8e-233

95.63

Show/hide

Query:  MAMATLPLFHQLLTLSNPKSATIFRPRLPTSQRTFHLSILCCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFH L TLSNPKS TI RPRLPTSQRTF LSIL CSSTSQSPEANLQSAESCVN GLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
Subjt:  MAMATLPLFHQLLTLSNPKSATIFRPRLPTSQRTFHLSILCCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDEAPDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGD APDVWETAGNLA+NVGGI+VFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDEAPDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWG+GRE QIEKKGFGAP TAAA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR+QQ+SEGVTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER
        RLDGRVRRSGRGMPDWQKIIEELPP+EALLSKLE+
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER

XP_008454363.1 PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Cucumis melo]

4.1e-234

96.55

Show/hide

Query:  MAMATLPLFHQLLTLSNPKSATIFRPRLPTSQRTFHLSILCCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFH L TLSNPKS TI RPRLPTSQRTFHLSIL CSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAA YNKA
Subjt:  MAMATLPLFHQLLTLSNPKSATIFRPRLPTSQRTFHLSILCCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDEAPDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGD APDVWETAGNLA+NVGGI+VFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDEAPDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWG+GRE QIEKKGFGAPA AAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER
        RLDGR+RRSGRGMPDWQKIIEELPP+EALLSKLE+
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER

XP_022935311.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata]

2.9e-227

92.68

Show/hide

Query:  MAMATLPLFHQLLTLSNPKSATIFRPRLPT--SQRTFHLSILCCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN
        + MATLP+FHQLLTLSNPKSATI R RLPT  SQR FH+SILCCSSTSQSPEAN++SAES VNLGLQLFSKGRVKEALVQFEAAL+M+PNPMEAQAALYN
Subjt:  MAMATLPLFHQLLTLSNPKSATIFRPRLPT--SQRTFHLSILCCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN

Query:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
        KACCHAYRGEGKKAADCLRVALREY+LKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
Subjt:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF

Query:  NIPRLFRAIQGGDEAPDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA
        N+PRLFRAIQGG+EAPDVWET GNLA+NVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSSAIQKA
Subjt:  NIPRLFRAIQGGDEAPDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA

Query:  ERFRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYI
        ERFRTELLRRGVLLVPVIW +GRE+++EKKGFGAPA A + ALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIRDQQKSEGVTPGEDVYI
Subjt:  ERFRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYI

Query:  ILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER
        ILRLDGRVRRSGRGMPDWQKIIEELPP++ALLSKLER
Subjt:  ILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER

XP_022983449.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima]

3.7e-227

92.68

Show/hide

Query:  MAMATLPLFHQLLTLSNPKSATIFRPRLPT--SQRTFHLSILCCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN
        + MATLP+FHQLLTLSNPKSATI R RLPT  SQR FH+SILCCSSTSQSPE N++SAES VNLGLQLFSKGRVKEALVQFEAAL+M+PNPMEAQAALYN
Subjt:  MAMATLPLFHQLLTLSNPKSATIFRPRLPT--SQRTFHLSILCCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN

Query:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
        KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
Subjt:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF

Query:  NIPRLFRAIQGGDEAPDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA
        N+PRLFRAIQGG+EAPDVWET GNLA+NVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSSAIQKA
Subjt:  NIPRLFRAIQGGDEAPDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA

Query:  ERFRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYI
        ERFRTELLRRGVLLVPVIW +GRE ++EKKGFGAPA A + ALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIRDQQKSEGVTPGEDVYI
Subjt:  ERFRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYI

Query:  ILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER
        ILRLDGRVRRSGRGMPDWQKIIEELPP++ALLSKLER
Subjt:  ILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER

XP_038905239.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida]

6.2e-230

95.4

Show/hide

Query:  MAMATLPLFHQLLTLSNPKSATIFRPRLPTSQRTFHLSILCCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFH LLT S+PKSATI RPRL TSQR FH+SILC SSTSQSPEANL+SAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
Subjt:  MAMATLPLFHQLLTLSNPKSATIFRPRLPTSQRTFHLSILCCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFF VALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDEAPDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGD APDVWETAGNLA+NVGGIVVFVALFLWDNKKEEEQL+QISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDEAPDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWG+GRE QIEKKGFGAPAT AA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEV+SPAEWESWIRDQQKSE VTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER
        RLDGRVRRSGRGMPDWQKIIEELPP+EALLSKLER
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT96 TPR_REGION domain-containing protein

3.8e-233

95.63

Show/hide

Query:  MAMATLPLFHQLLTLSNPKSATIFRPRLPTSQRTFHLSILCCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFH L TLSNPKS TI RPRLPTSQRTF LSIL CSSTSQSPEANLQSAESCVN GLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
Subjt:  MAMATLPLFHQLLTLSNPKSATIFRPRLPTSQRTFHLSILCCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDEAPDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGD APDVWETAGNLA+NVGGI+VFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDEAPDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWG+GRE QIEKKGFGAP TAAA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR+QQ+SEGVTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER
        RLDGRVRRSGRGMPDWQKIIEELPP+EALLSKLE+
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER

A0A1S3BYE8 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1

2.0e-234

96.55

Show/hide

Query:  MAMATLPLFHQLLTLSNPKSATIFRPRLPTSQRTFHLSILCCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFH L TLSNPKS TI RPRLPTSQRTFHLSIL CSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAA YNKA
Subjt:  MAMATLPLFHQLLTLSNPKSATIFRPRLPTSQRTFHLSILCCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDEAPDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGD APDVWETAGNLA+NVGGI+VFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDEAPDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWG+GRE QIEKKGFGAPA AAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER
        RLDGR+RRSGRGMPDWQKIIEELPP+EALLSKLE+
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER

A0A5A7TR76 Protein LOW PSII ACCUMULATION 1

2.0e-234

96.55

Show/hide

Query:  MAMATLPLFHQLLTLSNPKSATIFRPRLPTSQRTFHLSILCCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFH L TLSNPKS TI RPRLPTSQRTFHLSIL CSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAA YNKA
Subjt:  MAMATLPLFHQLLTLSNPKSATIFRPRLPTSQRTFHLSILCCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDEAPDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGD APDVWETAGNLA+NVGGI+VFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDEAPDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWG+GRE QIEKKGFGAPA AAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER
        RLDGR+RRSGRGMPDWQKIIEELPP+EALLSKLE+
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER

A0A6J1F472 protein LOW PSII ACCUMULATION 1, chloroplastic

1.4e-227

92.68

Show/hide

Query:  MAMATLPLFHQLLTLSNPKSATIFRPRLPT--SQRTFHLSILCCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN
        + MATLP+FHQLLTLSNPKSATI R RLPT  SQR FH+SILCCSSTSQSPEAN++SAES VNLGLQLFSKGRVKEALVQFEAAL+M+PNPMEAQAALYN
Subjt:  MAMATLPLFHQLLTLSNPKSATIFRPRLPT--SQRTFHLSILCCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN

Query:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
        KACCHAYRGEGKKAADCLRVALREY+LKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
Subjt:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF

Query:  NIPRLFRAIQGGDEAPDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA
        N+PRLFRAIQGG+EAPDVWET GNLA+NVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSSAIQKA
Subjt:  NIPRLFRAIQGGDEAPDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA

Query:  ERFRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYI
        ERFRTELLRRGVLLVPVIW +GRE+++EKKGFGAPA A + ALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIRDQQKSEGVTPGEDVYI
Subjt:  ERFRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYI

Query:  ILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER
        ILRLDGRVRRSGRGMPDWQKIIEELPP++ALLSKLER
Subjt:  ILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER

A0A6J1J7F4 protein LOW PSII ACCUMULATION 1, chloroplastic

1.8e-227

92.68

Show/hide

Query:  MAMATLPLFHQLLTLSNPKSATIFRPRLPT--SQRTFHLSILCCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN
        + MATLP+FHQLLTLSNPKSATI R RLPT  SQR FH+SILCCSSTSQSPE N++SAES VNLGLQLFSKGRVKEALVQFEAAL+M+PNPMEAQAALYN
Subjt:  MAMATLPLFHQLLTLSNPKSATIFRPRLPT--SQRTFHLSILCCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN

Query:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
        KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
Subjt:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF

Query:  NIPRLFRAIQGGDEAPDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA
        N+PRLFRAIQGG+EAPDVWET GNLA+NVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSSAIQKA
Subjt:  NIPRLFRAIQGGDEAPDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA

Query:  ERFRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYI
        ERFRTELLRRGVLLVPVIW +GRE ++EKKGFGAPA A + ALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIRDQQKSEGVTPGEDVYI
Subjt:  ERFRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYI

Query:  ILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER
        ILRLDGRVRRSGRGMPDWQKIIEELPP++ALLSKLER
Subjt:  ILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER

SwissProt top hits

e value

%identity

Alignment

Q9SRY4 Protein LOW PSII ACCUMULATION 1, chloroplastic

7.2e-173

72.27

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Query:  PKSATIFRPRLPTSQRTFHLSILCCSSTSQSPEANLQ----SAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAA
        P  AT+F  R       F  +    S +S  P  N      +AE CVN GL LF +GRVK+ALVQFE AL++ PNP+E+QAA YNKACCHAYRGEGKKA 
Subjt:  PKSATIFRPRLPTSQRTFHLSILCCSSTSQSPEANLQ----SAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAA

Query:  DCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNIPRLFRAIQGGDEA
        DCLR+ALR+YNLKF TILNDPDLASFRALPEFKELQEEAR+GGEDIG  FRRDLKLISEV+APFRGVR+FFY A +AAAGIS+ F +PRL +AI+GGD A
Subjt:  DCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNIPRLFRAIQGGDEA

Query:  PDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLV
        P++ ET GN AIN+GGIVV V+LFLW+NKKEEEQ+ QI+R+ETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETV+ A+QKA+RFRTELLRRGVLLV
Subjt:  PDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLV

Query:  PVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGM
        PV+WG+ +  +IEKKGFGA ++ AAT+LPSIGEDF+ RAQS+ A+SKLK EIRF+AE +SP EWE WIRDQQ SEGV PG+DVYIILRLDGRVRRSGRGM
Subjt:  PVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGM

Query:  PDWQKIIEELPPIEALLSKLER
        PDW +I +ELPP++ +LSKLER
Subjt:  PDWQKIIEELPPIEALLSKLER

Arabidopsis top hits

e value

%identity

Alignment

AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein

5.1e-174

72.27

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Query:  PKSATIFRPRLPTSQRTFHLSILCCSSTSQSPEANLQ----SAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAA
        P  AT+F  R       F  +    S +S  P  N      +AE CVN GL LF +GRVK+ALVQFE AL++ PNP+E+QAA YNKACCHAYRGEGKKA 
Subjt:  PKSATIFRPRLPTSQRTFHLSILCCSSTSQSPEANLQ----SAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAA

Query:  DCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNIPRLFRAIQGGDEA
        DCLR+ALR+YNLKF TILNDPDLASFRALPEFKELQEEAR+GGEDIG  FRRDLKLISEV+APFRGVR+FFY A +AAAGIS+ F +PRL +AI+GGD A
Subjt:  DCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNIPRLFRAIQGGDEA

Query:  PDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLV
        P++ ET GN AIN+GGIVV V+LFLW+NKKEEEQ+ QI+R+ETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETV+ A+QKA+RFRTELLRRGVLLV
Subjt:  PDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLV

Query:  PVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGM
        PV+WG+ +  +IEKKGFGA ++ AAT+LPSIGEDF+ RAQS+ A+SKLK EIRF+AE +SP EWE WIRDQQ SEGV PG+DVYIILRLDGRVRRSGRGM
Subjt:  PVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGM

Query:  PDWQKIIEELPPIEALLSKLER
        PDW +I +ELPP++ +LSKLER
Subjt:  PDWQKIIEELPPIEALLSKLER

AT4G28740.1 FUNCTIONS IN: molecular_function unknown

2.6e-32

30.86

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Query:  DLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNIPRLFRAIQGGDEAPDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRL-
        D ++ SEV +PFR VR FFY+A  A+  +  L    RL  A+     + +V E    L +++G   +F  L+  +NK +  Q+A++SR E L +L +R+ 
Subjt:  DLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNIPRLFRAIQGGDEAPDVWETAGNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRL-

Query:  STNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAE
          N+++ +  LR   R VI AG  E +  A ++++ +   L+ RGV++V                      A AT   S   +F++   +    S+ + +
Subjt:  STNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAE

Query:  IRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKL
        + +R   +   EWE W+ +Q+K   V+    VY+ LRLDGRVR SG G P WQ  + +LPP++ + + L
Subjt:  IRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKL

Sequences

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CDS sequence

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ATGGCTATGGCTACTCTTCCTCTGTTCCACCAGCTCCTCACCCTCTCAAACCCCAAATCAGCCACCATTTTCAGGCCCCGGCTACCCACTTCTCAAAGGACTTTCCATCT
CTCTATTCTCTGTTGCTCTTCTACTTCTCAGTCTCCAGAAGCTAATCTCCAATCTGCAGAGTCCTGTGTCAATCTCGGCCTCCAGCTCTTCTCTAAAGGACGGGTCAAAG
AAGCTTTAGTCCAGTTTGAAGCAGCACTGAATATGGATCCCAACCCAATGGAGGCCCAAGCTGCTTTGTACAATAAAGCATGCTGTCATGCCTATCGTGGGGAAGGAAAG
AAAGCCGCTGACTGTCTGCGTGTTGCATTAAGAGAATATAACCTGAAATTTGGCACAATTCTGAATGATCCTGACTTGGCCTCATTCAGAGCTCTTCCTGAATTCAAGGA
ATTGCAAGAAGAGGCTAGGATGGGTGGAGAGGATATAGGATATGGTTTTCGAAGAGATCTTAAACTCATTAGTGAAGTTCAAGCACCTTTCCGTGGGGTTCGAAGGTTCT
TTTATGTGGCACTATCTGCAGCTGCTGGAATTTCGTTGTTGTTTAATATACCCAGATTATTTCGTGCTATTCAAGGTGGTGATGAAGCTCCTGATGTTTGGGAAACTGCT
GGAAATTTAGCTATTAATGTTGGAGGTATTGTTGTTTTTGTGGCATTATTTTTATGGGACAACAAGAAAGAAGAGGAACAGCTCGCACAAATATCAAGAAATGAAACATT
ATCAAGATTGCCTCTACGTCTTTCCACCAATCGGATTGTTGAACTTGTACAGCTTCGAGATACTGTAAGACCGGTCATTTTAGCTGGGAAAAAGGAGACAGTTTCTTCAG
CCATTCAAAAGGCAGAAAGGTTCAGAACTGAGCTCCTTAGACGAGGTGTTCTCTTAGTTCCTGTCATATGGGGCCAAGGTAGGGAATCCCAAATAGAAAAGAAAGGGTTT
GGTGCTCCAGCCACCGCTGCTGCTACTGCTCTGCCATCTATTGGGGAAGATTTTGAGAAACGAGCTCAGTCTATAACTGCAAAATCAAAGTTGAAAGCTGAAATTCGATT
CAGGGCTGAGGTTATATCACCTGCAGAATGGGAAAGTTGGATAAGAGACCAGCAGAAATCTGAAGGGGTTACTCCTGGTGAGGATGTCTACATAATATTGCGATTGGATG
GTCGAGTTCGAAGATCAGGGAGAGGGATGCCCGACTGGCAAAAAATCATTGAAGAGTTACCACCAATAGAAGCTCTTCTAAGCAAGCTAGAAAGATGA

mRNA sequence

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Protein sequence

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MAMATLPLFHQLLTLSNPKSATIFRPRLPTSQRTFHLSILCCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGK
KAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNIPRLFRAIQGGDEAPDVWETA
GNLAINVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGQGRESQIEKKGF
GAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER

HG10019283 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome