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HG10019318 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019318
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCCHC-type domain-containing protein
Genome locationChr04:20264593..20264826
RNA-Seq ExpressionHG10019318
SyntenyHG10019318
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.7e-1046.58Show/hide
Query:  MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFWYGCSRIGHLAKEC
        +G F++VDC++  F WG  LRI+VL+    PLRRGI I+         I ++YERLPDF Y C  IGH + +C
Subjt:  MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFWYGCSRIGHLAKEC

XP_024018029.1 uncharacterized protein LOC112090594 [Morus notabilis]1.5e-0938.36Show/hide
Query:  MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFWYGCSRIGHLAKEC
        +G+ + V  D    CWG+++R++V++    P+RR + I  G+G+  +   +RYE+LPDF YGC + GH  +EC
Subjt:  MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFWYGCSRIGHLAKEC

XP_038710923.1 uncharacterized protein LOC120005387 [Tripterygium wilfordii]1.3e-1037.84Show/hide
Query:  MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFWYGCSRIGHLAKECK
        MG  + VD D++ + WGEFLR+++ V    PL+R +++   EG+++I + +++E+LP+F Y C  IGH+ ++C+
Subjt:  MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFWYGCSRIGHLAKECK

XP_039815364.1 uncharacterized protein LOC120678302 [Panicum virgatum]3.2e-1252.05Show/hide
Query:  MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFWYGCSRIGHLAKEC
        +G F+EVD + D F  G FLR+KV +    PLRRGI+ID GEG +     + YE LPDF Y C RIGH  K C
Subjt:  MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFWYGCSRIGHLAKEC

XP_039827601.1 uncharacterized protein LOC120689378 [Panicum virgatum]7.0e-1252.05Show/hide
Query:  MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFWYGCSRIGHLAKEC
        +G F+EVD + D F  G FLR+KV +    PLRRGI+ID GEG +     + YE LPDF Y C RIGH  K C
Subjt:  MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFWYGCSRIGHLAKEC

TrEMBL top hitse value%identityAlignment
A0A5C7IV30 CCHC-type domain-containing protein9.3e-1039.73Show/hide
Query:  MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFWYGCSRIGHLAKEC
        +G  +E+  D    CWG F+R+KVL+    PL+R + +   +  +  ++ ++YERLPDF Y C R+GH+ KEC
Subjt:  MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFWYGCSRIGHLAKEC

A0A6J1DU55 uncharacterized protein LOC1110231358.4e-1146.58Show/hide
Query:  MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFWYGCSRIGHLAKEC
        +G F++VDC++  F WG  LRI+VL+    PLRRGI I+         I ++YERLPDF Y C  IGH + +C
Subjt:  MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFWYGCSRIGHLAKEC

A0A803NE34 Uncharacterized protein2.4e-1047.95Show/hide
Query:  MGTFIEVDCDQDNFCWGEFLRIKVL----VPLRRGILIDSGEGKKSILIHVRYERLPDFWYGCSRIGHLAKEC
        +G F+E D D D   WGEF+R+K+L     PLRRGI ID+G   +   I  +YERL DF Y C R+GH  ++C
Subjt:  MGTFIEVDCDQDNFCWGEFLRIKVL----VPLRRGILIDSGEGKKSILIHVRYERLPDFWYGCSRIGHLAKEC

W9RBJ0 CCHC-type domain-containing protein7.1e-1038.36Show/hide
Query:  MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFWYGCSRIGHLAKEC
        +G+ + V  D    CWG+++R++V++    P+RR + I  G+G+  +   +RYE+LPDF YGC + GH  +EC
Subjt:  MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFWYGCSRIGHLAKEC

W9RRS1 CCHC-type domain-containing protein7.1e-1038.36Show/hide
Query:  MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFWYGCSRIGHLAKEC
        +G+ + V  D    CWG+++R++V++    P+RR + I  G+G+  +   +RYE+LPDF YGC + GH  +EC
Subjt:  MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFWYGCSRIGHLAKEC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGACTTTCATTGAAGTGGATTGCGATCAAGATAACTTTTGCTGGGGGGAATTTCTCAGGATTAAAGTTCTGGTACCTTTAAGAAGAGGTATATTAATCGATTCTGG
GGAAGGAAAAAAGAGTATCTTGATTCATGTTAGATATGAAAGACTTCCAGATTTCTGGTATGGGTGTAGTCGAATTGGACATTTGGCTAAAGAATGTAAATTCTTGAATT
TCGAAAAAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGACTTTCATTGAAGTGGATTGCGATCAAGATAACTTTTGCTGGGGGGAATTTCTCAGGATTAAAGTTCTGGTACCTTTAAGAAGAGGTATATTAATCGATTCTGG
GGAAGGAAAAAAGAGTATCTTGATTCATGTTAGATATGAAAGACTTCCAGATTTCTGGTATGGGTGTAGTCGAATTGGACATTTGGCTAAAGAATGTAAATTCTTGAATT
TCGAAAAAAAATGA
Protein sequenceShow/hide protein sequence
MGTFIEVDCDQDNFCWGEFLRIKVLVPLRRGILIDSGEGKKSILIHVRYERLPDFWYGCSRIGHLAKECKFLNFEKK