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HG10019373 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019373
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionlarge ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1
Genome locationChr04:21051042..21051657
RNA-Seq ExpressionHG10019373
SyntenyHG10019373
Gene Ontology termsNA
InterPro domainsIPR044985 - Large ribosomal RNA subunit accumulation protein YceD homologue 2, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581325.1 Large ribosomal RNA subunit accumulation protein YCED-like 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]5.7e-4584.03Show/hide
Query:  MRFQFSNITIKVLTHSIISMKQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQN
        MR Q S+I  +VLT +II ++QI ANFNVLVLSSNRA RE  LPDIGGDDPSVIYVKPGLEADLDSLV DTIRLTTSTKDTCSELCEKSQP+VQYIGAQN
Subjt:  MRFQFSNITIKVLTHSIISMKQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQN

Query:  AASIDKRWSRLLELRKSNA
        AASIDKRWSRLLELRKS++
Subjt:  AASIDKRWSRLLELRKSNA

XP_011651803.2 large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1 [Cucumis sativus]6.3e-4493.94Show/hide
Query:  KQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQNAASIDKRWSRLLELRKSNA
        ++I ANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV DTIRLTTSTKDTCSE+CEKSQPTVQYIGAQNAASIDKRWSRLLELRKSN+
Subjt:  KQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQNAASIDKRWSRLLELRKSNA

XP_022934819.1 large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1 [Cucurbita moschata]8.8e-4684.87Show/hide
Query:  MRFQFSNITIKVLTHSIISMKQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQN
        MR QFS+I  +VLT +II ++QI ANFNVLVLSSNRA RE  LPDIGGDDPSVIYVKPGLEADLDSLV DTIRLTTSTKDTCSELCEKSQP+VQYIGAQN
Subjt:  MRFQFSNITIKVLTHSIISMKQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQN

Query:  AASIDKRWSRLLELRKSNA
        AASIDKRWSRLLELRKS++
Subjt:  AASIDKRWSRLLELRKSNA

XP_022983268.1 large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2 [Cucurbita maxima]3.4e-4584.03Show/hide
Query:  MRFQFSNITIKVLTHSIISMKQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQN
        MR QFS+I  +VLT  II ++QI ANFNVLVLSSNRA RE  LP+IGGDDPSVIYVKPGLEADLDSLV DTIRLTTSTKDTCSELCEKSQP+VQYIGAQN
Subjt:  MRFQFSNITIKVLTHSIISMKQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQN

Query:  AASIDKRWSRLLELRKSNA
        AASIDKRWSRLLELRKS++
Subjt:  AASIDKRWSRLLELRKSNA

XP_031738565.1 large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [Cucumis sativus]6.3e-4493.94Show/hide
Query:  KQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQNAASIDKRWSRLLELRKSNA
        ++I ANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV DTIRLTTSTKDTCSE+CEKSQPTVQYIGAQNAASIDKRWSRLLELRKSN+
Subjt:  KQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQNAASIDKRWSRLLELRKSNA

TrEMBL top hitse value%identityAlignment
A0A0A0L9P4 Uncharacterized protein3.1e-4493.94Show/hide
Query:  KQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQNAASIDKRWSRLLELRKSNA
        ++I ANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV DTIRLTTSTKDTCSE+CEKSQPTVQYIGAQNAASIDKRWSRLLELRKSN+
Subjt:  KQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQNAASIDKRWSRLLELRKSNA

A0A1S3CFK7 uncharacterized protein LOC1035003663.4e-4384.21Show/hide
Query:  SNITIKVLTHSIISMKQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQNAASID
        ++ T K  T S+   ++I ANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV DTIRLTTSTKDTCSE CEKSQPTVQYIGAQNAASID
Subjt:  SNITIKVLTHSIISMKQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQNAASID

Query:  KRWSRLLELRKSNA
        KRW RLLELRKS A
Subjt:  KRWSRLLELRKSNA

A0A5D3C1F8 DUF177 domain-containing protein3.4e-4384.21Show/hide
Query:  SNITIKVLTHSIISMKQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQNAASID
        ++ T K  T S+   ++I ANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV DTIRLTTSTKDTCSE CEKSQPTVQYIGAQNAASID
Subjt:  SNITIKVLTHSIISMKQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQNAASID

Query:  KRWSRLLELRKSNA
        KRW RLLELRKS A
Subjt:  KRWSRLLELRKSNA

A0A6J1F3N3 large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X14.3e-4684.87Show/hide
Query:  MRFQFSNITIKVLTHSIISMKQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQN
        MR QFS+I  +VLT +II ++QI ANFNVLVLSSNRA RE  LPDIGGDDPSVIYVKPGLEADLDSLV DTIRLTTSTKDTCSELCEKSQP+VQYIGAQN
Subjt:  MRFQFSNITIKVLTHSIISMKQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQN

Query:  AASIDKRWSRLLELRKSNA
        AASIDKRWSRLLELRKS++
Subjt:  AASIDKRWSRLLELRKSNA

A0A6J1J7A5 large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X21.6e-4584.03Show/hide
Query:  MRFQFSNITIKVLTHSIISMKQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQN
        MR QFS+I  +VLT  II ++QI ANFNVLVLSSNRA RE  LP+IGGDDPSVIYVKPGLEADLDSLV DTIRLTTSTKDTCSELCEKSQP+VQYIGAQN
Subjt:  MRFQFSNITIKVLTHSIISMKQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQN

Query:  AASIDKRWSRLLELRKSNA
        AASIDKRWSRLLELRKS++
Subjt:  AASIDKRWSRLLELRKSNA

SwissProt top hitse value%identityAlignment
Q9C5M1 Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic2.0e-2959.46Show/hide
Query:  SNITIKVLTHSIISMKQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQNAASID
        ++I  K    S +  + I  +F V +L S+R NR   LP+IGGDDPSVIYV+PG EA+LDSLV DTIRLTT  KD CS+ CEKS+PT+ Y+G  N AS+D
Subjt:  SNITIKVLTHSIISMKQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQNAASID

Query:  KRWSRLLELRK
        KRWSRLLEL+K
Subjt:  KRWSRLLELRK

Arabidopsis top hitse value%identityAlignment
AT3G19800.1 Protein of unknown function (DUF177)1.5e-3059.46Show/hide
Query:  SNITIKVLTHSIISMKQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQNAASID
        ++I  K    S +  + I  +F V +L S+R NR   LP+IGGDDPSVIYV+PG EA+LDSLV DTIRLTT  KD CS+ CEKS+PT+ Y+G  N AS+D
Subjt:  SNITIKVLTHSIISMKQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQNAASID

Query:  KRWSRLLELRK
        KRWSRLLEL+K
Subjt:  KRWSRLLELRK

AT3G19800.2 Protein of unknown function (DUF177)1.5e-3059.46Show/hide
Query:  SNITIKVLTHSIISMKQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQNAASID
        ++I  K    S +  + I  +F V +L S+R NR   LP+IGGDDPSVIYV+PG EA+LDSLV DTIRLTT  KD CS+ CEKS+PT+ Y+G  N AS+D
Subjt:  SNITIKVLTHSIISMKQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQNAASID

Query:  KRWSRLLELRK
        KRWSRLLEL+K
Subjt:  KRWSRLLELRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTTTCAATTCAGCAACATTACAATCAAAGTTCTAACACATTCAATCATCTCAATGAAACAGATCACTGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAGC
CAACAGGGAGATTCATCTTCCAGATATTGGAGGTGACGATCCATCGGTGATCTACGTTAAACCTGGACTTGAAGCCGATCTAGATTCATTGGTATGTGACACAATTAGGC
TTACCACCTCAACCAAGGACACTTGCTCAGAGTTGTGTGAAAAATCTCAACCCACAGTACAATATATTGGGGCACAGAATGCTGCATCTATAGACAAGAGGTGGTCCAGG
CTTTTGGAGCTTAGAAAATCTAATGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGTTTCAATTCAGCAACATTACAATCAAAGTTCTAACACATTCAATCATCTCAATGAAACAGATCACTGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAGC
CAACAGGGAGATTCATCTTCCAGATATTGGAGGTGACGATCCATCGGTGATCTACGTTAAACCTGGACTTGAAGCCGATCTAGATTCATTGGTATGTGACACAATTAGGC
TTACCACCTCAACCAAGGACACTTGCTCAGAGTTGTGTGAAAAATCTCAACCCACAGTACAATATATTGGGGCACAGAATGCTGCATCTATAGACAAGAGGTGGTCCAGG
CTTTTGGAGCTTAGAAAATCTAATGCATAG
Protein sequenceShow/hide protein sequence
MRFQFSNITIKVLTHSIISMKQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQNAASIDKRWSR
LLELRKSNA