; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10019385 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019385
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description60S ribosomal protein L44
Genome locationChr04:21204930..21212889
RNA-Seq ExpressionHG10019385
SyntenyHG10019385
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000552 - Ribosomal protein L44e
IPR011332 - Zinc-binding ribosomal protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO65938.1 Ribosomal protein L44e [Corchorus olitorius]8.4e-53100Show/hide
Query:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
        EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
Subjt:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

PHT62729.1 60S ribosomal protein L44 [Capsicum annuum]4.9e-5399.06Show/hide
Query:  KEVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKG
        KEVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKG
Subjt:  KEVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKG

Query:  KGTSLF
        KGTSLF
Subjt:  KGTSLF

PIN00418.1 60S ribosomal protein L44 [Handroanthus impetiginosus]8.4e-53100Show/hide
Query:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
        EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
Subjt:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

XP_038876865.1 putative RING-H2 finger protein ATL53 [Benincasa hispida]1.1e-5560Show/hide
Query:  TASTFRFTLRRHDDTDDQSLLIRLGFIQRKLSRSPSAGLPYEILYESTMIPMRITMFPLPLRDLEDPLLCHIYVVRLLAYLDLTAVTCDIIAKDITSVVR
        TASTFR++LRR+D   DQSL IRLGF+ R LSRSPS+GLPYEILYE      R T FPL LRDLEDPL C  Y+ +LL  LDL AVTCDI+A+ ITSVV 
Subjt:  TASTFRFTLRRHDDTDDQSLLIRLGFIQRKLSRSPSAGLPYEILYESTMIPMRITMFPLPLRDLEDPLLCHIYVVRLLAYLDLTAVTCDIIAKDITSVVR

Query:  ELLAAGNVEVKFRIVAEIDHIQMYWSDQIGES-------RRGVVAEETVILEEAPARRTAAETAIERLKMEKFDGFGGEELGDCCVCYEELKEGEKEVNV
        E+L +GN +VKF+I AEIDH+QM+W+++   S       RRG+V EE  +LEEAPARR AAE   +RLKMEKFD     E+GDCCVCYEEL +  KEV+ 
Subjt:  ELLAAGNVEVKFRIVAEIDHIQMYWSDQIGES-------RRGVVAEETVILEEAPARRTAAETAIERLKMEKFDGFGGEELGDCCVCYEELKEGEKEVNV

Query:  PKTKKTYCKS
         +    Y KS
Subjt:  PKTKKTYCKS

XP_038905732.1 E3 ubiquitin-protein ligase arkadia-A-like [Benincasa hispida]3.5e-8379.33Show/hide
Query:  MSSPGTASTFRFTLRRHDDTDDQSLLIRLGFIQRKLSRSPSAGLPYEILYESTMIPMRITMFPLPLRDLEDPLLCHIYVVRLLAYLDLTAVTCDIIAKDI
        MSS  TASTFRF+LRRHDD+DDQSLLIRLGF+ R+LSRSPSAGLPYEIL+ES  IPMRI MFPLPLRDLEDPLLC +YV+RLL+YLDL AV CDIIA DI
Subjt:  MSSPGTASTFRFTLRRHDDTDDQSLLIRLGFIQRKLSRSPSAGLPYEILYESTMIPMRITMFPLPLRDLEDPLLCHIYVVRLLAYLDLTAVTCDIIAKDI

Query:  TSVVRELLAAGNVEVKFRIVAEIDHIQMYWSDQIGESRRGVVAEETVILEEAPARRTAAETAIERLKMEKFDGFGGEELGDCCVCYEELKEGEKEVNVPK
        TS + E+LAAGN EVKFRIVA+IDHI+M+W +QIGESRRGVVAEETVILEEAP RRTAA+TAIERLK EKFDGF GEELGDCCVC EELKEG+KEV+   
Subjt:  TSVVRELLAAGNVEVKFRIVAEIDHIQMYWSDQIGESRRGVVAEETVILEEAPARRTAAETAIERLKMEKFDGFGGEELGDCCVCYEELKEGEKEVNVPK

Query:  TKKTYCKS
            Y KS
Subjt:  TKKTYCKS

TrEMBL top hitse value%identityAlignment
A0A0B0PY50 60S ribosomal L444.1e-53100Show/hide
Query:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
        EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
Subjt:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

A0A1R3H6E5 Ribosomal protein L44e4.1e-53100Show/hide
Query:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
        EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
Subjt:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

A0A2G2XZ44 60S ribosomal protein L442.4e-5399.06Show/hide
Query:  KEVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKG
        KEVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKG
Subjt:  KEVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKG

Query:  KGTSLF
        KGTSLF
Subjt:  KGTSLF

A0A2G9G523 60S ribosomal protein L444.1e-53100Show/hide
Query:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
        EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
Subjt:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

A0A6A1V215 60S ribosomal protein L449.1e-5399.05Show/hide
Query:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
        +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
Subjt:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

SwissProt top hitse value%identityAlignment
O23290 60S ribosomal protein L36a1.3e-5193.27Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKG
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSLF
        TSLF
Subjt:  TSLF

O59870 60S ribosomal protein L446.9e-4277.67Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VNVPKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSL
         ++
Subjt:  TSL

P0CQ50 60S ribosomal protein L441.2e-4177.67Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSL
         ++
Subjt:  TSL

P0CQ51 60S ribosomal protein L441.2e-4177.67Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSL
         ++
Subjt:  TSL

Q96499 60S ribosomal protein L443.2e-55100Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSLF
        TSLF
Subjt:  TSLF

Arabidopsis top hitse value%identityAlignment
AT3G23390.1 Zinc-binding ribosomal protein family protein9.0e-5393.27Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKG
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSLF
        TSLF
Subjt:  TSLF

AT4G14320.1 Zinc-binding ribosomal protein family protein9.0e-5393.27Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKG
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSLF
        TSLF
Subjt:  TSLF

AT4G14320.2 Zinc-binding ribosomal protein family protein2.4e-4592.39Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI
        VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEI
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCTCCCGGAACCGCTTCCACCTTCCGCTTCACTCTCCGCCGCCACGACGACACCGACGATCAGTCTCTCCTAATTCGTTTGGGCTTTATACAACGTAAGCTCTC
CCGATCGCCGTCCGCTGGACTTCCGTACGAAATCCTCTATGAATCTACCATGATTCCAATGCGGATTACTATGTTCCCTCTCCCATTGCGAGACCTCGAAGATCCTTTGC
TCTGCCATATTTACGTCGTTCGATTGCTCGCTTACTTGGACCTCACCGCCGTAACCTGCGATATAATCGCTAAGGATATCACGTCTGTCGTTCGTGAACTATTGGCCGCC
GGAAACGTCGAGGTTAAGTTCCGCATTGTGGCGGAAATCGATCACATCCAAATGTACTGGAGTGACCAGATCGGTGAAAGTAGGCGCGGTGTTGTGGCGGAGGAGACGGT
GATTCTGGAAGAAGCTCCGGCGAGGAGAACGGCGGCGGAGACGGCGATTGAGAGGTTGAAGATGGAGAAATTTGATGGGTTTGGGGGAGAAGAGTTGGGAGATTGCTGTG
TTTGTTATGAAGAATTGAAGGAAGGGGAGAAGGAGGTGAACGTTCCCAAGACAAAGAAGACTTATTGCAAGAGCAAGGAGTGCAGGAAGCACACCTTGCACAAGGTTACA
CAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAACGTCGGTATGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCTGTGTTTCACAAGAAGGCAAA
AACTACCAAGAAGATTGTGTTGAGGCTGCAATGCCAAGGGTGCAAACACGTATCCCAGCACCCAATCAAGAGATGCAAGCACTTCGAAATTGGTGGAGACAAGAAGGGAA
AGGGAACTTCTCTTTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCTCCCGGAACCGCTTCCACCTTCCGCTTCACTCTCCGCCGCCACGACGACACCGACGATCAGTCTCTCCTAATTCGTTTGGGCTTTATACAACGTAAGCTCTC
CCGATCGCCGTCCGCTGGACTTCCGTACGAAATCCTCTATGAATCTACCATGATTCCAATGCGGATTACTATGTTCCCTCTCCCATTGCGAGACCTCGAAGATCCTTTGC
TCTGCCATATTTACGTCGTTCGATTGCTCGCTTACTTGGACCTCACCGCCGTAACCTGCGATATAATCGCTAAGGATATCACGTCTGTCGTTCGTGAACTATTGGCCGCC
GGAAACGTCGAGGTTAAGTTCCGCATTGTGGCGGAAATCGATCACATCCAAATGTACTGGAGTGACCAGATCGGTGAAAGTAGGCGCGGTGTTGTGGCGGAGGAGACGGT
GATTCTGGAAGAAGCTCCGGCGAGGAGAACGGCGGCGGAGACGGCGATTGAGAGGTTGAAGATGGAGAAATTTGATGGGTTTGGGGGAGAAGAGTTGGGAGATTGCTGTG
TTTGTTATGAAGAATTGAAGGAAGGGGAGAAGGAGGTGAACGTTCCCAAGACAAAGAAGACTTATTGCAAGAGCAAGGAGTGCAGGAAGCACACCTTGCACAAGGTTACA
CAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAACGTCGGTATGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCTGTGTTTCACAAGAAGGCAAA
AACTACCAAGAAGATTGTGTTGAGGCTGCAATGCCAAGGGTGCAAACACGTATCCCAGCACCCAATCAAGAGATGCAAGCACTTCGAAATTGGTGGAGACAAGAAGGGAA
AGGGAACTTCTCTTTTCTAG
Protein sequenceShow/hide protein sequence
MSSPGTASTFRFTLRRHDDTDDQSLLIRLGFIQRKLSRSPSAGLPYEILYESTMIPMRITMFPLPLRDLEDPLLCHIYVVRLLAYLDLTAVTCDIIAKDITSVVRELLAA
GNVEVKFRIVAEIDHIQMYWSDQIGESRRGVVAEETVILEEAPARRTAAETAIERLKMEKFDGFGGEELGDCCVCYEELKEGEKEVNVPKTKKTYCKSKECRKHTLHKVT
QYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF