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HG10019415 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019415
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA-directed RNA polymerase II subunit RPB11-like protein
Genome locationChr04:21592609..21594727
RNA-Seq ExpressionHG10019415
SyntenyHG10019415
Gene Ontology termsGO:0006366 - transcription by RNA polymerase II (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0001055 - RNA polymerase II activity (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR008193 - DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
IPR009025 - DNA-directed RNA polymerase, RBP11-like dimerisation domain
IPR036603 - RNA polymerase, RBP11-like subunit
IPR037685 - RNA polymerase RBP11


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE9459807.1 hypothetical protein C3L33_08289, partial [Rhododendron williamsianum]6.7e-5398.13Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIERE+HT+GNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LKNAFEV
        LKNAFEV
Subjt:  LKNAFEV

KAG5539074.1 hypothetical protein RHGRI_019578 [Rhododendron griersonianum]6.7e-5398.13Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIERE+HT+GNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LKNAFEV
        LKNAFEV
Subjt:  LKNAFEV

RYR22165.1 hypothetical protein Ahy_B03g067442 isoform D [Arachis hypogaea]8.7e-5398.13Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNI+RMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLD+ELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LKNAFEV
        LKNAFEV
Subjt:  LKNAFEV

RYR69425.1 hypothetical protein Ahy_A03g015966 isoform C [Arachis hypogaea]8.7e-5398.13Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNI+RMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLD+ELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LKNAFEV
        LKNAFEV
Subjt:  LKNAFEV

XP_008461807.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis melo]8.7e-53100Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LKNAFE
        LKNAFE
Subjt:  LKNAFE

TrEMBL top hitse value%identityAlignment
A0A0A0LCD5 RNA_pol_L_2 domain-containing protein4.2e-53100Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LKNAFE
        LKNAFE
Subjt:  LKNAFE

A0A445A731 RNA_pol_L_2 domain-containing protein4.2e-5398.13Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNI+RMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLD+ELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LKNAFEV
        LKNAFEV
Subjt:  LKNAFEV

A0A445A743 RNA_pol_L_2 domain-containing protein4.2e-5398.13Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNI+RMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLD+ELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LKNAFEV
        LKNAFEV
Subjt:  LKNAFEV

A0A445E1Q7 RNA_pol_L_2 domain-containing protein4.2e-5398.13Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNI+RMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLD+ELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LKNAFEV
        LKNAFEV
Subjt:  LKNAFEV

A0A6A4LZ80 RNA_pol_L_2 domain-containing protein (Fragment)3.2e-5398.13Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIERE+HT+GNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LKNAFEV
        LKNAFEV
Subjt:  LKNAFEV

SwissProt top hitse value%identityAlignment
P52435 DNA-directed RNA polymerase II subunit RPB11-a3.8e-2752.34Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAGYK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LKNAFEV
        L+  F V
Subjt:  LKNAFEV

Q32P79 DNA-directed RNA polymerase II subunit RPB113.8e-2752.34Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAGYK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LKNAFEV
        L+  F V
Subjt:  LKNAFEV

Q38859 DNA-directed RNA polymerases II, IV and V subunit 117.7e-5291.51Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAGY+LPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELD+
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LKNAFE
        LKN FE
Subjt:  LKNAFE

Q86JJ5 DNA-directed RNA polymerase II subunit rpb112.9e-2749.52Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAPDR+E FV+P+G KKV+  RDTKI NA+ FTI +E+HTIGN++RMQL  D++++FAGY++PHPL++ + +RI T + ++P++   +++  L +E   
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LKNAF
        L+N+F
Subjt:  LKNAF

Q9VJE4 DNA-directed RNA polymerase II subunit RPB111.5e-2652.83Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAP  +E F++ EG KK+  E DTK+ NAA FTI +E+HT+GN++R QL +D NVLFAGYK+PHPL++K ++RI TT+  SP +A+  AI DL  EL  
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LKNAFE
         +  F+
Subjt:  LKNAFE

Arabidopsis top hitse value%identityAlignment
AT2G29540.1 RNApolymerase 14 kDa subunit7.0e-0830.38Show/hide
Query:  INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFE
        ++ ASFT+  E+HT+ N +R  L++D  V  A Y +PHP   ++ +R+ TT   +  + +  A  +L +   H+++ F+
Subjt:  INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFE

AT2G29540.2 RNApolymerase 14 kDa subunit7.0e-0830.38Show/hide
Query:  INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFE
        ++ ASFT+  E+HT+ N +R  L++D  V  A Y +PHP   ++ +R+ TT   +  + +  A  +L +   H+++ F+
Subjt:  INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFE

AT3G52090.1 DNA-directed RNA polymerase, RBP11-like5.5e-5391.51Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAGY+LPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELD+
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LKNAFE
        LKN FE
Subjt:  LKNAFE

AT3G52090.2 DNA-directed RNA polymerase, RBP11-like3.1e-4871.32Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR--------------------------
        MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAGY+LPHPL+YKIIVR                          
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR--------------------------

Query:  ----IHTTSQSSPMQAYNQAINDLDKELDHLKNAFE
            IHTTSQSSPMQAYNQAINDLDKELD+LKN FE
Subjt:  ----IHTTSQSSPMQAYNQAINDLDKELDHLKNAFE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGCCCCCGACCGATACGAGCGCTTCGTCGTCCCAGAGGGTACCAAAAAGGTCTCATACGAGAGAGACACAAAAATCATTAATGCGGCGTCGTTTACCATTGAACG
AGAGGAACATACCATTGGAAACATCTTGCGAATGCAGCTGCACAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCTTTGCAGTATAAAATTATTGTCC
GGATCCATACTACTAGCCAATCGTCACCGATGCAAGCATATAATCAAGCCATCAACGATTTGGACAAGGAGCTTGATCATTTGAAAAATGCATTTGAGGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGCCCCCGACCGATACGAGCGCTTCGTCGTCCCAGAGGGTACCAAAAAGGTCTCATACGAGAGAGACACAAAAATCATTAATGCGGCGTCGTTTACCATTGAACG
AGAGGAACATACCATTGGAAACATCTTGCGAATGCAGCTGCACAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCTTTGCAGTATAAAATTATTGTCC
GGATCCATACTACTAGCCAATCGTCACCGATGCAAGCATATAATCAAGCCATCAACGATTTGGACAAGGAGCTTGATCATTTGAAAAATGCATTTGAGGTTTGA
Protein sequenceShow/hide protein sequence
MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEV