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HG10019425 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019425
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionarabinogalactan protein 23
Genome locationChr04:21738879..21744572
RNA-Seq ExpressionHG10019425
SyntenyHG10019425
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650936.1 hypothetical protein Csa_001741 [Cucumis sativus]5.0e-2795.45Show/hide
Query:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCSST
        MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCS++
Subjt:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCSST
KAG6581581.1 hypothetical protein SDJN03_21583, partial [Cucurbita argyrosperma subsp. sororia]2.5e-2693.85Show/hide
Query:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCSS
        MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARHVW RVLDC+LCS+
Subjt:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCSS
XP_011651782.1 uncharacterized protein LOC105434940 [Cucumis sativus]6.5e-2796.92Show/hide
Query:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCSS
        MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCS+
Subjt:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCSS
XP_022934952.1 uncharacterized protein LOC111441965 [Cucurbita moschata]2.5e-2693.85Show/hide
Query:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCSS
        MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARHVW RVLDC+LCS+
Subjt:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCSS
XP_038905300.1 uncharacterized protein LOC120091370 [Benincasa hispida]5.0e-2798.46Show/hide
Query:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCSS
        MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCS+
Subjt:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCSS
TrEMBL top hitse value%identityAlignment
A0A0A0LD25 Uncharacterized protein3.1e-2796.92Show/hide
Query:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCSS
        MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCS+
Subjt:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCSS
A0A1S4E3E9 uncharacterized protein LOC1079918653.1e-2796.92Show/hide
Query:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCSS
        MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCS+
Subjt:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCSS
A0A6J1DEC8 uncharacterized protein LOC1110202774.5e-2692.31Show/hide
Query:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCSS
        MLQFFFT+AFSAVPLTLY+PPLRS NLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC+LCS+
Subjt:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCSS
A0A6J1F484 uncharacterized protein LOC1114419651.2e-2693.85Show/hide
Query:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCSS
        MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARHVW RVLDC+LCS+
Subjt:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCSS
A0A6J1J7E0 uncharacterized protein LOC1114819231.2e-2693.85Show/hide
Query:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCSS
        MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARHVW RVLDC+LCS+
Subjt:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCSS
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 232.5e-0556.52Show/hide
Query:  SSTSAAVAHDEALAPAPGPSSGAATVLPAIGSLIGASLLSVAAYYL
        +S +A +A +E  APAPGP+S A+  LPA+GSL+GASL+S+ +YYL
Subjt:  SSTSAAVAHDEALAPAPGPSSGAATVLPAIGSLIGASLLSVAAYYL
Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)4.4e-0552Show/hide
Query:  ILCSSTSAAVAHDEALAPAPGP-SSGAATVLPAIGSLIGASLLSVAAYYL
        +  +++  AV   E  APAPGP +SGA+  +PA+GSL+GASL+S+ AYYL
Subjt:  ILCSSTSAAVAHDEALAPAPGP-SSGAATVLPAIGSLIGASLLSVAAYYL
AT3G52105.1 unknown protein2.9e-1763.08Show/hide
Query:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCSS
        MLQ FFT+AFSA PLTLYIPP+R   +FVETMEE+  E R Y+ R++PRAR  W R+LDC   SS
Subjt:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCSS
AT3G57690.1 arabinogalactan protein 231.8e-0656.52Show/hide
Query:  SSTSAAVAHDEALAPAPGPSSGAATVLPAIGSLIGASLLSVAAYYL
        +S +A +A +E  APAPGP+S A+  LPA+GSL+GASL+S+ +YYL
Subjt:  SSTSAAVAHDEALAPAPGPSSGAATVLPAIGSLIGASLLSVAAYYL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCAGTTCTTCTTCACCGTTGCTTTCTCTGCAGTACCTTTGACTCTCTACATTCCTCCGCTCCGGAGCTTCAATCTCTTCGTCGAGACCATGGAGGAGATACTTCG
GGAGTCAAGAACATACACCAATCGGGTGTATCCGCGAGCTCGCCATGTTTGGTTGAGGGTTTTGGATTGTATTCTTTGCAGCAGCACCAGCGCCGCCGTGGCTCACGATG
AGGCGTTGGCTCCAGCACCTGGACCAAGCAGTGGCGCCGCCACTGTTCTCCCGGCAATTGGCTCTCTCATCGGCGCTTCGTTGCTCTCCGTCGCCGCCTACTACTTGCAA
TGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCAGTTCTTCTTCACCGTTGCTTTCTCTGCAGTACCTTTGACTCTCTACATTCCTCCGCTCCGGAGCTTCAATCTCTTCGTCGAGACCATGGAGGAGATACTTCG
GGAGTCAAGAACATACACCAATCGGGTGTATCCGCGAGCTCGCCATGTTTGGTTGAGGGTTTTGGATTGTATTCTTTGCAGCAGCACCAGCGCCGCCGTGGCTCACGATG
AGGCGTTGGCTCCAGCACCTGGACCAAGCAGTGGCGCCGCCACTGTTCTCCCGGCAATTGGCTCTCTCATCGGCGCTTCGTTGCTCTCCGTCGCCGCCTACTACTTGCAA
TGA
Protein sequenceShow/hide protein sequence
MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCSSTSAAVAHDEALAPAPGPSSGAATVLPAIGSLIGASLLSVAAYYLQ