; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10019456 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019456
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTranscription termination factor like
Genome locationChr04:22012451..22012903
RNA-Seq ExpressionHG10019456
SyntenyHG10019456
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606858.1 hypothetical protein SDJN03_00200, partial [Cucurbita argyrosperma subsp. sororia]1.7e-3078.95Show/hide
Query:  MTPILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPRVQTPSSVRRNRSDDGGRF
        M PILE DAGE FVKIAMF+ VQ+LVY ILS+SS+LFS DQKL+SLSFKPARSVSIRRFLAALSD+P GGELSPS RV+TPS + R  SDDGGRF
Subjt:  MTPILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPRVQTPSSVRRNRSDDGGRF

KAG7018107.1 hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-3184.21Show/hide
Query:  MTPILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPRVQTPSSVRRNRSDDGGRF
        M  ILE D   +F+KIAMFVFVQVLVYLILSKSSNLFSND+KLRSLSFKPARSVSIRR LAALSDLPPGGELSPS  V TPSSVRR RSDD GRF
Subjt:  MTPILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPRVQTPSSVRRNRSDDGGRF

XP_008461750.1 PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo]7.7e-3186.96Show/hide
Query:  MTPILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPRVQTPSSVRRNRSDDG
        MTPI E+DAGEMFV+IAMFVFVQ+LVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELS       PSSVRR RSDDG
Subjt:  MTPILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPRVQTPSSVRRNRSDDG

XP_011651805.2 uncharacterized protein LOC105434941 [Cucumis sativus]1.8e-3587.23Show/hide
Query:  MTPILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPRVQTPSSVRRNRSDDGGR
        MTPI ++DAGEMFV+IAMFVF+Q+LVYLILSKSSNLFSNDQK+RSLSFKPARSVSIRRFLAALSDLPPGGELSPS +V TPSS RR+RSDDGGR
Subjt:  MTPILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPRVQTPSSVRRNRSDDGGR

XP_038905322.1 uncharacterized protein LOC120091388 [Benincasa hispida]7.2e-3790.53Show/hide
Query:  MTPILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPRVQTPSSVRRNRSDDGGRF
        MTPILESD  EMFVKIAMF FVQ+LVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGE+SP+PRVQTPSS RR+ SDDGGRF
Subjt:  MTPILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPRVQTPSSVRRNRSDDGGRF

TrEMBL top hitse value%identityAlignment
A0A0A0LD48 Uncharacterized protein6.0e-2148.99Show/hide
Query:  MAARRSKNLRQELSLSIKTPSRPPFLLSNFTPIFFFLQQLKISPPPSQIQPQFFIMTPILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRS
        MAA+  K      S   K PS+PPF +SNFTPIFF  + + +S   S+I       + IL  DA   +                  +  ++  N  K+RS
Subjt:  MAARRSKNLRQELSLSIKTPSRPPFLLSNFTPIFFFLQQLKISPPPSQIQPQFFIMTPILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRS

Query:  LSFKPARSVSIRRFLAALSDLPPGGELSPSPRVQTPSSVRRNRSDDGGR
        LSFKPARSVSIRRFLAALSDLPPGGELSPS +V TPSS R +RSDDGGR
Subjt:  LSFKPARSVSIRRFLAALSDLPPGGELSPSPRVQTPSSVRRNRSDDGGR

A0A1S3CFW1 uncharacterized protein LOC1035002813.7e-3186.96Show/hide
Query:  MTPILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPRVQTPSSVRRNRSDDG
        MTPI E+DAGEMFV+IAMFVFVQ+LVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELS       PSSVRR RSDDG
Subjt:  MTPILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPRVQTPSSVRRNRSDDG

A0A5A7UC63 Uncharacterized protein3.7e-3186.96Show/hide
Query:  MTPILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPRVQTPSSVRRNRSDDG
        MTPI E+DAGEMFV+IAMFVFVQ+LVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELS       PSSVRR RSDDG
Subjt:  MTPILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPRVQTPSSVRRNRSDDG

A0A6P4BPM5 uncharacterized protein LOC1074341565.2e-1761.63Show/hide
Query:  ILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPRVQTPSSVRRNRS
        +LES   +M +K+ +F  VQ LVYLILSKSS++FS   K RS SFKPARSVS+RRFLAALSD+P GGELSPSP+    S  + N S
Subjt:  ILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPRVQTPSSVRRNRS

B9REM2 Uncharacterized protein1.1e-1772.97Show/hide
Query:  ILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPR
        I+ES  G+M +K+AMF  VQ LVY+ILSKSSN+FSN  K RS SFKPARSVSIRRFLAAL DLP  GELSPSP+
Subjt:  ILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G05575.1 unknown protein4.5e-1352.78Show/hide
Query:  LESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAALSDLPPGGELSPS
        +E     M +K+++F  +Q LVYLILSKSS++FS  + + R+ SF+ ARS+SIRR LA L D+P GGE+SPS
Subjt:  LESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAALSDLPPGGELSPS

AT2G31945.1 unknown protein1.6e-1351.25Show/hide
Query:  LESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAALSDLPPGGELSPSPRVQTPSS
        ++   G M +K+A+F  VQ LVYLIL KSS +F+    L R+ SF+P RSVSIRR LAAL D+P G ++SPS    + SS
Subjt:  LESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAALSDLPPGGELSPSPRVQTPSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCTAGACGGTCAAAGAATCTCCGCCAAGAGCTTTCGCTCTCTATAAAAACACCCTCAAGACCTCCATTTTTGCTATCCAATTTCACTCCCATCTTCTTCTTCCT
CCAGCAACTCAAGATTTCACCTCCTCCATCTCAGATTCAGCCTCAATTCTTCATTATGACGCCGATTTTGGAATCCGATGCCGGCGAGATGTTCGTCAAAATCGCCATGT
TCGTCTTTGTTCAGGTTCTTGTCTATTTGATCCTCTCCAAATCCTCCAATCTCTTCTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGT
ATTCGCCGGTTTCTCGCGGCTCTTTCCGACCTACCTCCTGGCGGCGAGCTTTCTCCGTCACCGAGAGTTCAAACTCCGTCGTCTGTTCGCCGGAATCGTTCCGATGACGG
TGGCAGATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGGCTAGACGGTCAAAGAATCTCCGCCAAGAGCTTTCGCTCTCTATAAAAACACCCTCAAGACCTCCATTTTTGCTATCCAATTTCACTCCCATCTTCTTCTTCCT
CCAGCAACTCAAGATTTCACCTCCTCCATCTCAGATTCAGCCTCAATTCTTCATTATGACGCCGATTTTGGAATCCGATGCCGGCGAGATGTTCGTCAAAATCGCCATGT
TCGTCTTTGTTCAGGTTCTTGTCTATTTGATCCTCTCCAAATCCTCCAATCTCTTCTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGT
ATTCGCCGGTTTCTCGCGGCTCTTTCCGACCTACCTCCTGGCGGCGAGCTTTCTCCGTCACCGAGAGTTCAAACTCCGTCGTCTGTTCGCCGGAATCGTTCCGATGACGG
TGGCAGATTTTAG
Protein sequenceShow/hide protein sequence
MAARRSKNLRQELSLSIKTPSRPPFLLSNFTPIFFFLQQLKISPPPSQIQPQFFIMTPILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVS
IRRFLAALSDLPPGGELSPSPRVQTPSSVRRNRSDDGGRF