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HG10019477 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019477
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like
Genome locationChr04:22243125..22252885
RNA-Seq ExpressionHG10019477
SyntenyHG10019477
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004136625.2 uncharacterized protein LOC101215817 isoform X1 [Cucumis sativus]2.2e-3280.9Show/hide
Query:  PNGFQFHLNLGMSNFETGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
        P   Q+     +     GTQASVNYGPHPSPVVSPFCAMGL+QASRDASYEQWQSAAMMYAHSYNQ RHSAFQAPFCQQPLSFDYSQNH
Subjt:  PNGFQFHLNLGMSNFETGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH

XP_008443221.1 PREDICTED: uncharacterized protein LOC103486865 isoform X2 [Cucumis melo]4.1e-3178.65Show/hide
Query:  PNGFQFHLNLGMSNFETGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
        P   Q+     +     GTQASVNYGPHPS VVSPFCAMGL+QASRDASYEQWQ+AAMMYAHSYNQ RHSAFQAPFCQQPLSFDYSQNH
Subjt:  PNGFQFHLNLGMSNFETGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH

XP_022152036.1 uncharacterized protein LOC111019846 [Momordica charantia]7.0e-3166.67Show/hide
Query:  FSPTLHINPIFNVAN-LHQYHAPNGFQFHLNLGMSNFETGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQ
        ++  L  N   N+A  + Q   P   Q+     +     GTQASV+YGPHPSPVVSPFC +GL+Q SRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQ
Subjt:  FSPTLHINPIFNVAN-LHQYHAPNGFQFHLNLGMSNFETGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQ

Query:  QPLSFDYSQNH
        QPLSFDYSQNH
Subjt:  QPLSFDYSQNH

XP_023527688.1 uncharacterized protein LOC111790835 [Cucurbita pepo subsp. pepo]1.3e-2990.28Show/hide
Query:  GTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
        GTQ S+NYGPHPSPVVSPF AMG+++ SRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
Subjt:  GTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH

XP_038903441.1 uncharacterized protein LOC120090027 [Benincasa hispida]5.7e-3382.02Show/hide
Query:  PNGFQFHLNLGMSNFETGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
        P   Q+     +     GTQASVNYGPHPSPVVSPFCAMGL+QASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
Subjt:  PNGFQFHLNLGMSNFETGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH

TrEMBL top hitse value%identityAlignment
A0A0A0LFE9 Uncharacterized protein1.1e-3280.9Show/hide
Query:  PNGFQFHLNLGMSNFETGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
        P   Q+     +     GTQASVNYGPHPSPVVSPFCAMGL+QASRDASYEQWQSAAMMYAHSYNQ RHSAFQAPFCQQPLSFDYSQNH
Subjt:  PNGFQFHLNLGMSNFETGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH

A0A1S3B8A9 uncharacterized protein LOC103486865 isoform X22.0e-3178.65Show/hide
Query:  PNGFQFHLNLGMSNFETGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
        P   Q+     +     GTQASVNYGPHPS VVSPFCAMGL+QASRDASYEQWQ+AAMMYAHSYNQ RHSAFQAPFCQQPLSFDYSQNH
Subjt:  PNGFQFHLNLGMSNFETGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH

A0A6J1DGF4 uncharacterized protein LOC1110198463.4e-3166.67Show/hide
Query:  FSPTLHINPIFNVAN-LHQYHAPNGFQFHLNLGMSNFETGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQ
        ++  L  N   N+A  + Q   P   Q+     +     GTQASV+YGPHPSPVVSPFC +GL+Q SRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQ
Subjt:  FSPTLHINPIFNVAN-LHQYHAPNGFQFHLNLGMSNFETGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQ

Query:  QPLSFDYSQNH
        QPLSFDYSQNH
Subjt:  QPLSFDYSQNH

A0A6J1I664 uncharacterized protein LOC1114699951.4e-2975.28Show/hide
Query:  PNGFQFHLNLGMSNFETGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
        P   Q+     +     GTQASV+YGPHPSP VSPFC +GL+Q SRDASYEQWQSAAMMYAHSYNQLRHSAFQAPF QQPLSFDYSQNH
Subjt:  PNGFQFHLNLGMSNFETGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH

A0A6J1J0D7 uncharacterized protein LOC1114823206.4e-3090.28Show/hide
Query:  GTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
        GTQ S+NYGPHPSPVVSPF AMG+++ SRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
Subjt:  GTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH

SwissProt top hitse value%identityAlignment
F4HYJ7 DExH-box ATP-dependent RNA helicase DExH31.5e-1238.76Show/hide
Query:  DRSTNLNVLGCYLTMLPME-----------------PILTIVARLNVRDSFLTPLKKKDVLQPVKAIDSLR---------------KVVEKNFGGY---W
        D   NL  LG  L+MLP+E                 P++T+VA L+VRD FL P  KKD+ +  ++  S R               K  E+   GY   W
Subjt:  DRSTNLNVLGCYLTMLPME-----------------PILTIVARLNVRDSFLTPLKKKDVLQPVKAIDSLR---------------KVVEKNFGGY---W

Query:  KNFLSVQSVKAIDSLRKEFFSLLKDIDLI
        KNFLS Q++KA+DS+RK+FF+LLK+  LI
Subjt:  KNFLSVQSVKAIDSLRKEFFSLLKDIDLI

F4IM84 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial3.9e-1643.85Show/hide
Query:  DRSTNLNVLGCYLTMLPME-----------------PILTIVARLNVRDSFLTPLKKKDV---------------LQPVKAIDSLRKVVEKN--FGGYWK
        D + +L  LG YL+ LPME                 PILT+ A L+VRD FLTP  KKD+               L  V+A +  +K  E++  +   WK
Subjt:  DRSTNLNVLGCYLTMLPME-----------------PILTIVARLNVRDSFLTPLKKKDV---------------LQPVKAIDSLRKVVEKN--FGGYWK

Query:  NFLSVQSVKAIDSLRKEFFSLLKDIDLIHG
        NFLS+QS++AIDSLRKEFFSLLKD  LI G
Subjt:  NFLSVQSVKAIDSLRKEFFSLLKDIDLIHG

Arabidopsis top hitse value%identityAlignment
AT1G48650.1 DEA(D/H)-box RNA helicase family protein1.1e-1338.76Show/hide
Query:  DRSTNLNVLGCYLTMLPME-----------------PILTIVARLNVRDSFLTPLKKKDVLQPVKAIDSLR---------------KVVEKNFGGY---W
        D   NL  LG  L+MLP+E                 P++T+VA L+VRD FL P  KKD+ +  ++  S R               K  E+   GY   W
Subjt:  DRSTNLNVLGCYLTMLPME-----------------PILTIVARLNVRDSFLTPLKKKDVLQPVKAIDSLR---------------KVVEKNFGGY---W

Query:  KNFLSVQSVKAIDSLRKEFFSLLKDIDLI
        KNFLS Q++KA+DS+RK+FF+LLK+  LI
Subjt:  KNFLSVQSVKAIDSLRKEFFSLLKDIDLI

AT1G48650.2 DEA(D/H)-box RNA helicase family protein1.1e-1338.76Show/hide
Query:  DRSTNLNVLGCYLTMLPME-----------------PILTIVARLNVRDSFLTPLKKKDVLQPVKAIDSLR---------------KVVEKNFGGY---W
        D   NL  LG  L+MLP+E                 P++T+VA L+VRD FL P  KKD+ +  ++  S R               K  E+   GY   W
Subjt:  DRSTNLNVLGCYLTMLPME-----------------PILTIVARLNVRDSFLTPLKKKDVLQPVKAIDSLR---------------KVVEKNFGGY---W

Query:  KNFLSVQSVKAIDSLRKEFFSLLKDIDLI
        KNFLS Q++KA+DS+RK+FF+LLK+  LI
Subjt:  KNFLSVQSVKAIDSLRKEFFSLLKDIDLI

AT2G01130.1 DEA(D/H)-box RNA helicase family protein2.7e-1743.85Show/hide
Query:  DRSTNLNVLGCYLTMLPME-----------------PILTIVARLNVRDSFLTPLKKKDV---------------LQPVKAIDSLRKVVEKN--FGGYWK
        D + +L  LG YL+ LPME                 PILT+ A L+VRD FLTP  KKD+               L  V+A +  +K  E++  +   WK
Subjt:  DRSTNLNVLGCYLTMLPME-----------------PILTIVARLNVRDSFLTPLKKKDV---------------LQPVKAIDSLRKVVEKN--FGGYWK

Query:  NFLSVQSVKAIDSLRKEFFSLLKDIDLIHG
        NFLS+QS++AIDSLRKEFFSLLKD  LI G
Subjt:  NFLSVQSVKAIDSLRKEFFSLLKDIDLIHG

AT2G40960.1 Single-stranded nucleic acid binding R3H protein3.5e-1248.78Show/hide
Query:  NLGMSNFETGTQASVNYGPHPSPVVSPFCAMGLHQASRDAS-YEQW-QSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQN
        ++G   +      S+N G H   V+SP    GL+Q SRDA+ Y QW  +AA+MY HSY+  R+S FQA F  QPLSFDY QN
Subjt:  NLGMSNFETGTQASVNYGPHPSPVVSPFCAMGLHQASRDAS-YEQW-QSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQN

AT3G56680.1 Single-stranded nucleic acid binding R3H protein2.4e-1338.68Show/hide
Query:  TLHINPIFNVANLHQYHAPNGFQFHLNLGMSNFETGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLS
        +L +N  FN+   +    P  + + +     N      A + +GPHPS ++SP+        + DA Y  W +AAMMYAH Y Q R+ + QA F QQPLS
Subjt:  TLHINPIFNVANLHQYHAPNGFQFHLNLGMSNFETGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLS

Query:  FDYSQN
        FDY QN
Subjt:  FDYSQN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCATTCAATCAAATGTTCAAGAACATGTTGCTTTCCTTCAAGAACATCAAGGCAACCCATATCGAGTCCAAAGTCAAGTGGTCATGCTGCAAGAACATCAAGATAG
GAGTACAAATCTTAATGTTTTAGGTTGTTATTTGACTATGCTCCCAATGGAACCAATTTTGACCATTGTTGCCCGTCTTAATGTGAGAGACTCTTTTCTAACACCACTTA
AGAAGAAGGATGTTTTACAACCAGTGAAGGCTATTGATTCACTAAGGAAAGTTGTTGAGAAGAACTTTGGTGGATATTGGAAGAACTTTCTTTCTGTACAATCAGTGAAA
GCTATTGATTCACTAAGGAAGGAGTTCTTTTCTTTGCTTAAAGATATTGACTTGATCCATGGGTATTTGAACACCAACAACGATTGGAGTCTTGATGAACTTGATGAAAA
TTTTATGTCTTGGAGTGTTTTTCATAATATTTTTGTTCAAGATGTAGGAGCTGGCACATACAAAAAGTTAGAGAATAAGAAGTCGTGTCCTTTCATGATTTTGCAGAAAT
ATGTGACCAATGCCTACAAGATCGATTTCTCTCCTACTTTGCACATCAACCCTATATTCAATGTTGCAAATCTGCACCAATATCATGCCCCCAATGGTTTTCAGTTTCAT
CTTAACTTGGGGATGAGTAATTTTGAGACAGGAACTCAAGCTTCAGTTAACTATGGGCCTCATCCAAGTCCTGTTGTAAGCCCTTTCTGCGCAATGGGTTTACACCAGGC
ATCTAGAGATGCTTCTTATGAGCAGTGGCAGAGTGCTGCAATGATGTATGCCCATTCCTACAACCAGCTCAGGCACTCTGCTTTTCAGGCCCCATTCTGTCAGCAACCCC
TCAGCTTTGACTATTCTCAAAACCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCATTCAATCAAATGTTCAAGAACATGTTGCTTTCCTTCAAGAACATCAAGGCAACCCATATCGAGTCCAAAGTCAAGTGGTCATGCTGCAAGAACATCAAGATAG
GAGTACAAATCTTAATGTTTTAGGTTGTTATTTGACTATGCTCCCAATGGAACCAATTTTGACCATTGTTGCCCGTCTTAATGTGAGAGACTCTTTTCTAACACCACTTA
AGAAGAAGGATGTTTTACAACCAGTGAAGGCTATTGATTCACTAAGGAAAGTTGTTGAGAAGAACTTTGGTGGATATTGGAAGAACTTTCTTTCTGTACAATCAGTGAAA
GCTATTGATTCACTAAGGAAGGAGTTCTTTTCTTTGCTTAAAGATATTGACTTGATCCATGGGTATTTGAACACCAACAACGATTGGAGTCTTGATGAACTTGATGAAAA
TTTTATGTCTTGGAGTGTTTTTCATAATATTTTTGTTCAAGATGTAGGAGCTGGCACATACAAAAAGTTAGAGAATAAGAAGTCGTGTCCTTTCATGATTTTGCAGAAAT
ATGTGACCAATGCCTACAAGATCGATTTCTCTCCTACTTTGCACATCAACCCTATATTCAATGTTGCAAATCTGCACCAATATCATGCCCCCAATGGTTTTCAGTTTCAT
CTTAACTTGGGGATGAGTAATTTTGAGACAGGAACTCAAGCTTCAGTTAACTATGGGCCTCATCCAAGTCCTGTTGTAAGCCCTTTCTGCGCAATGGGTTTACACCAGGC
ATCTAGAGATGCTTCTTATGAGCAGTGGCAGAGTGCTGCAATGATGTATGCCCATTCCTACAACCAGCTCAGGCACTCTGCTTTTCAGGCCCCATTCTGTCAGCAACCCC
TCAGCTTTGACTATTCTCAAAACCATTAG
Protein sequenceShow/hide protein sequence
MGIQSNVQEHVAFLQEHQGNPYRVQSQVVMLQEHQDRSTNLNVLGCYLTMLPMEPILTIVARLNVRDSFLTPLKKKDVLQPVKAIDSLRKVVEKNFGGYWKNFLSVQSVK
AIDSLRKEFFSLLKDIDLIHGYLNTNNDWSLDELDENFMSWSVFHNIFVQDVGAGTYKKLENKKSCPFMILQKYVTNAYKIDFSPTLHINPIFNVANLHQYHAPNGFQFH
LNLGMSNFETGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH