; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10019552 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019552
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptiondouble-stranded RNA-binding protein 1-like
Genome locationChr04:23102796..23106599
RNA-Seq ExpressionHG10019552
SyntenyHG10019552
Gene Ontology termsGO:0003725 - double-stranded RNA binding (molecular function)
InterPro domainsIPR014720 - Double-stranded RNA-binding domain
IPR044450 - AtDRB-like, first double-stranded RNA binding domain, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057203.1 double-stranded RNA-binding protein 1 isoform X1 [Cucumis melo var. makuwa]3.8e-6779.77Show/hide
Query:  FCNYLLSWTTQSQEDSFGAITKLDNTITSPLRPEADPEVANESSELGESTKDSSSMSNMDVKFAAQSVEPKIQNTDKSPMVEDFDKEGLKLSGMQHLCKN
        FCNY +         +FGAI  LDN +TSP RPE   EVAN+SSEL ES+KDS  MSNMDVKFA QSVEPKI NTDKSP+VEDFDKE LKL+GMQHL KN
Subjt:  FCNYLLSWTTQSQEDSFGAITKLDNTITSPLRPEADPEVANESSELGESTKDSSSMSNMDVKFAAQSVEPKIQNTDKSPMVEDFDKEGLKLSGMQHLCKN

Query:  KLQNFAQKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEAS
        KLQNF+QKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTY SPEFHGTLKDAENAVAKVALM LCQDGAQE S
Subjt:  KLQNFAQKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEAS

KAG6581661.1 Double-stranded RNA-binding protein 4, partial [Cucurbita argyrosperma subsp. sororia]1.8e-6481.48Show/hide
Query:  SQEDSFGAITKLDNTITSPLRPEADPEVANESSELGESTKDSSSMSNMDVKFAAQSVEPKIQNTDKSPMVEDFDKEGLKLSGMQHLCKNKLQNFAQKRSL
        SQ D+FGA T LDNT++ PLRPE   EVANE SEL ESTKDSS  SNMDVKF+AQSVEPKIQNTDKSP+V+ FDKE  KL+GMQHL KNKLQNFAQK++L
Subjt:  SQEDSFGAITKLDNTITSPLRPEADPEVANESSELGESTKDSSSMSNMDVKFAAQSVEPKIQNTDKSPMVEDFDKEGLKLSGMQHLCKNKLQNFAQKRSL

Query:  TLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEAS
        TLP+YTCERDGPPHASRFRCKVEIDGKTYESPEFH TLKDAENAVAKVAL+S CQDG QE S
Subjt:  TLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEAS

XP_004141127.1 double-stranded RNA-binding protein 1 [Cucumis sativus]4.2e-6682.72Show/hide
Query:  SQEDSFGAITKLDNTITSPLRPEADPEVANESSELGESTKDSSSMSNMDVKFAAQSVEPKIQNTDKSPMVEDFDKEGLKLSGMQHLCKNKLQNFAQKRSL
        SQ  +FGAIT LDN +TSP RPE   EV+ +SSEL ES+KDS  MSNMDVKF AQSVEP+IQNT+KSP+VEDFDKE LKL+GMQHL KNKLQNF+QKR L
Subjt:  SQEDSFGAITKLDNTITSPLRPEADPEVANESSELGESTKDSSSMSNMDVKFAAQSVEPKIQNTDKSPMVEDFDKEGLKLSGMQHLCKNKLQNFAQKRSL

Query:  TLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEAS
        TLPMYTCERDGPPHASRFRCKVEIDGKTYES EFHGTLKDAENAVAKVALMSLCQDGAQE S
Subjt:  TLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEAS

XP_008464954.1 PREDICTED: double-stranded RNA-binding protein 1 isoform X1 [Cucumis melo]5.0e-6783.95Show/hide
Query:  SQEDSFGAITKLDNTITSPLRPEADPEVANESSELGESTKDSSSMSNMDVKFAAQSVEPKIQNTDKSPMVEDFDKEGLKLSGMQHLCKNKLQNFAQKRSL
        SQ  +FGAI  LDN +TSP RPE   EVAN+SSEL ES+KDS  MSNMDVKFA QSVEPKI NTDKSP+VEDFDKE LKL+GMQHL KNKLQNF+QKRSL
Subjt:  SQEDSFGAITKLDNTITSPLRPEADPEVANESSELGESTKDSSSMSNMDVKFAAQSVEPKIQNTDKSPMVEDFDKEGLKLSGMQHLCKNKLQNFAQKRSL

Query:  TLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEAS
        TLPMYTCERDGPPHASRFRCKVEIDGKTY SPEFHGTLKDAENAVAKVALM LCQDGAQE S
Subjt:  TLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEAS

XP_038904852.1 double-stranded RNA-binding protein 1-like isoform X1 [Benincasa hispida]2.0e-6884.24Show/hide
Query:  TTQSQEDSFGAITKLDNTITSPLRPEADPEVANESSELGESTKDSSSMSNMDVKFAAQSVEPKIQNTDKSPMVEDFDKEGLKLSGMQHLCKNKLQNFAQK
        T  S   S GAIT LDNT+TSPLRPE   EVANES EL +S KDSS MSNMDVKFAAQ VEPKIQNTDKSP+VEDFDKE LKL+GMQHL KNKLQN AQK
Subjt:  TTQSQEDSFGAITKLDNTITSPLRPEADPEVANESSELGESTKDSSSMSNMDVKFAAQSVEPKIQNTDKSPMVEDFDKEGLKLSGMQHLCKNKLQNFAQK

Query:  RSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEAS
        R L+LPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVAL+SLCQDGAQE S
Subjt:  RSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEAS

TrEMBL top hitse value%identityAlignment
A0A1S3CMT3 double-stranded RNA-binding protein 1 isoform X12.4e-6783.95Show/hide
Query:  SQEDSFGAITKLDNTITSPLRPEADPEVANESSELGESTKDSSSMSNMDVKFAAQSVEPKIQNTDKSPMVEDFDKEGLKLSGMQHLCKNKLQNFAQKRSL
        SQ  +FGAI  LDN +TSP RPE   EVAN+SSEL ES+KDS  MSNMDVKFA QSVEPKI NTDKSP+VEDFDKE LKL+GMQHL KNKLQNF+QKRSL
Subjt:  SQEDSFGAITKLDNTITSPLRPEADPEVANESSELGESTKDSSSMSNMDVKFAAQSVEPKIQNTDKSPMVEDFDKEGLKLSGMQHLCKNKLQNFAQKRSL

Query:  TLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEAS
        TLPMYTCERDGPPHASRFRCKVEIDGKTY SPEFHGTLKDAENAVAKVALM LCQDGAQE S
Subjt:  TLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEAS

A0A5D3D5D0 Double-stranded RNA-binding protein 1 isoform X11.8e-6779.77Show/hide
Query:  FCNYLLSWTTQSQEDSFGAITKLDNTITSPLRPEADPEVANESSELGESTKDSSSMSNMDVKFAAQSVEPKIQNTDKSPMVEDFDKEGLKLSGMQHLCKN
        FCNY +         +FGAI  LDN +TSP RPE   EVAN+SSEL ES+KDS  MSNMDVKFA QSVEPKI NTDKSP+VEDFDKE LKL+GMQHL KN
Subjt:  FCNYLLSWTTQSQEDSFGAITKLDNTITSPLRPEADPEVANESSELGESTKDSSSMSNMDVKFAAQSVEPKIQNTDKSPMVEDFDKEGLKLSGMQHLCKN

Query:  KLQNFAQKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEAS
        KLQNF+QKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTY SPEFHGTLKDAENAVAKVALM LCQDGAQE S
Subjt:  KLQNFAQKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEAS

A0A6J1EVN0 double-stranded RNA-binding protein 1-like1.8e-6279.63Show/hide
Query:  SQEDSFGAITKLDNTITSPLRPEADPEVANESSELGESTKDSSSMSNMDVKFAAQSVEPKIQNTDKSPMVEDFDKEGLKLSGMQHLCKNKLQNFAQKRSL
        SQ D+FGA + LDN ++ PLRPE   EVANE SEL ESTKDSS  SNMDVKF+AQSVEPKIQNTDKSP+V+ FDKE  KL+GMQHL KNKLQNFAQK++L
Subjt:  SQEDSFGAITKLDNTITSPLRPEADPEVANESSELGESTKDSSSMSNMDVKFAAQSVEPKIQNTDKSPMVEDFDKEGLKLSGMQHLCKNKLQNFAQKRSL

Query:  TLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEAS
        TLP+YTCERDGPPHASRFR KVEIDGKTYESPEFH TLKDAENAVAKVAL+S CQDG QE S
Subjt:  TLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEAS

A0A6J1IRS0 double-stranded RNA-binding protein 4-like isoform X14.0e-6279.01Show/hide
Query:  SQEDSFGAITKLDNTITSPLRPEADPEVANESSELGESTKDSSSMSNMDVKFAAQSVEPKIQNTDKSPMVEDFDKEGLKLSGMQHLCKNKLQNFAQKRSL
        SQ D+FGA T LDNT++ P RP    EVANESS L ESTKDSS  SNM VKF+AQSVEPKIQNTDKSP+V+ FDKE  KL+GM+HL KNKLQNFAQK++L
Subjt:  SQEDSFGAITKLDNTITSPLRPEADPEVANESSELGESTKDSSSMSNMDVKFAAQSVEPKIQNTDKSPMVEDFDKEGLKLSGMQHLCKNKLQNFAQKRSL

Query:  TLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEAS
        TLP+YTCERDGPPHASRFRCKVEIDGKTYESPEFH TLKDAENAVAKVAL+S CQDG QE S
Subjt:  TLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEAS

A0A6J1IZS6 double-stranded RNA-binding protein 1-like isoform X24.0e-6279.01Show/hide
Query:  SQEDSFGAITKLDNTITSPLRPEADPEVANESSELGESTKDSSSMSNMDVKFAAQSVEPKIQNTDKSPMVEDFDKEGLKLSGMQHLCKNKLQNFAQKRSL
        SQ D+FGA T LDNT++ P RP    EVANESS L ESTKDSS  SNM VKF+AQSVEPKIQNTDKSP+V+ FDKE  KL+GM+HL KNKLQNFAQK++L
Subjt:  SQEDSFGAITKLDNTITSPLRPEADPEVANESSELGESTKDSSSMSNMDVKFAAQSVEPKIQNTDKSPMVEDFDKEGLKLSGMQHLCKNKLQNFAQKRSL

Query:  TLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEAS
        TLP+YTCERDGPPHASRFRCKVEIDGKTYESPEFH TLKDAENAVAKVAL+S CQDG QE S
Subjt:  TLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEAS

SwissProt top hitse value%identityAlignment
Q5N8Z0 Double-stranded RNA-binding protein 12.7e-1550Show/hide
Query:  KNKLQNFAQKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEASLPI
        K++LQ +AQK+   LP Y   R+GP HASRF+  V +DGK +ESPE+  T+K+AE+A AK+ALMSL Q+ +    +P+
Subjt:  KNKLQNFAQKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEASLPI

Q8H1D4 Double-stranded RNA-binding protein 41.0e-1453.52Show/hide
Query:  MQHLCKNKLQNFAQKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSL
        M H+ K +LQ +A + +L LP+Y  ER+GPPHA RFRC V   G+T++S EF  TLK AE+A AK+A+ SL
Subjt:  MQHLCKNKLQNFAQKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSL

Q9AV50 Double-stranded RNA-binding protein 67.3e-1350Show/hide
Query:  KNKLQNFAQKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDG
        KN+LQ  AQ+    LP YTC R+GP HA RF+  V  +G+ +ESP F  TL+ AE+A A+VAL +L + G
Subjt:  KNKLQNFAQKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDG

Q9LJF5 Double-stranded RNA-binding protein 31.2e-1244.59Show/hide
Query:  KNKLQNFAQKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEA
        KN+LQ  AQ+   +LP YTC R+GP HA RF+  V  +G+ +ESP +  TL+ AE++ A+VAL +L   G  ++
Subjt:  KNKLQNFAQKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEA

Q9SKN2 Double-stranded RNA-binding protein 22.8e-1247.14Show/hide
Query:  KNKLQNFAQKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDG
        KN+LQ  AQ+    LP YTC R+GP HA RF+  V  +G+ +ESP++  TL+ AE++ A+VAL +L   G
Subjt:  KNKLQNFAQKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDG

Arabidopsis top hitse value%identityAlignment
AT3G26932.1 dsRNA-binding protein 38.9e-1444.59Show/hide
Query:  KNKLQNFAQKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEA
        KN+LQ  AQ+   +LP YTC R+GP HA RF+  V  +G+ +ESP +  TL+ AE++ A+VAL +L   G  ++
Subjt:  KNKLQNFAQKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEA

AT3G26932.2 dsRNA-binding protein 38.9e-1444.59Show/hide
Query:  KNKLQNFAQKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEA
        KN+LQ  AQ+   +LP YTC R+GP HA RF+  V  +G+ +ESP +  TL+ AE++ A+VAL +L   G  ++
Subjt:  KNKLQNFAQKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEA

AT3G62800.1 double-stranded-RNA-binding protein 47.3e-1653.52Show/hide
Query:  MQHLCKNKLQNFAQKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSL
        M H+ K +LQ +A + +L LP+Y  ER+GPPHA RFRC V   G+T++S EF  TLK AE+A AK+A+ SL
Subjt:  MQHLCKNKLQNFAQKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSL

AT3G62800.2 double-stranded-RNA-binding protein 47.3e-1653.52Show/hide
Query:  MQHLCKNKLQNFAQKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSL
        M H+ K +LQ +A + +L LP+Y  ER+GPPHA RFRC V   G+T++S EF  TLK AE+A AK+A+ SL
Subjt:  MQHLCKNKLQNFAQKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSL

AT3G62800.3 double-stranded-RNA-binding protein 47.3e-1653.52Show/hide
Query:  MQHLCKNKLQNFAQKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSL
        M H+ K +LQ +A + +L LP+Y  ER+GPPHA RFRC V   G+T++S EF  TLK AE+A AK+A+ SL
Subjt:  MQHLCKNKLQNFAQKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATTGACATGGTTGTATAATTACTTCAAATATTTGGCCTTCTGCAATTATTTGTTATCCTGGACAACACAAAGTCAAGAAGACAGTTTTGGTGCAATAACTAAACT
GGATAACACAATTACTTCTCCACTGAGACCAGAAGCAGACCCTGAGGTGGCAAATGAATCTTCTGAACTTGGGGAATCTACTAAAGATTCTTCCAGCATGAGCAATATGG
ACGTCAAATTTGCAGCACAGTCAGTTGAACCAAAAATTCAAAACACTGACAAGTCTCCCATGGTTGAAGACTTCGACAAAGAAGGCCTTAAGTTGTCTGGTATGCAACAT
TTGTGCAAGAATAAGCTGCAAAATTTTGCTCAGAAGAGAAGCCTTACTTTACCTATGTACACGTGTGAGCGTGATGGCCCACCCCATGCTAGTCGCTTTAGATGTAAAGT
GGAAATAGATGGAAAGACCTATGAAAGTCCAGAATTTCATGGCACATTGAAAGATGCTGAGAATGCAGTTGCAAAAGTTGCTTTAATGTCGTTATGTCAAGATGGAGCTC
AAGAGGCTAGTCTTCCAATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACATTGACATGGTTGTATAATTACTTCAAATATTTGGCCTTCTGCAATTATTTGTTATCCTGGACAACACAAAGTCAAGAAGACAGTTTTGGTGCAATAACTAAACT
GGATAACACAATTACTTCTCCACTGAGACCAGAAGCAGACCCTGAGGTGGCAAATGAATCTTCTGAACTTGGGGAATCTACTAAAGATTCTTCCAGCATGAGCAATATGG
ACGTCAAATTTGCAGCACAGTCAGTTGAACCAAAAATTCAAAACACTGACAAGTCTCCCATGGTTGAAGACTTCGACAAAGAAGGCCTTAAGTTGTCTGGTATGCAACAT
TTGTGCAAGAATAAGCTGCAAAATTTTGCTCAGAAGAGAAGCCTTACTTTACCTATGTACACGTGTGAGCGTGATGGCCCACCCCATGCTAGTCGCTTTAGATGTAAAGT
GGAAATAGATGGAAAGACCTATGAAAGTCCAGAATTTCATGGCACATTGAAAGATGCTGAGAATGCAGTTGCAAAAGTTGCTTTAATGTCGTTATGTCAAGATGGAGCTC
AAGAGGCTAGTCTTCCAATTTAA
Protein sequenceShow/hide protein sequence
MTLTWLYNYFKYLAFCNYLLSWTTQSQEDSFGAITKLDNTITSPLRPEADPEVANESSELGESTKDSSSMSNMDVKFAAQSVEPKIQNTDKSPMVEDFDKEGLKLSGMQH
LCKNKLQNFAQKRSLTLPMYTCERDGPPHASRFRCKVEIDGKTYESPEFHGTLKDAENAVAKVALMSLCQDGAQEASLPI