; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10019553 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019553
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptiondouble-stranded RNA-binding protein 1 isoform X2
Genome locationChr04:23109299..23109682
RNA-Seq ExpressionHG10019553
SyntenyHG10019553
Gene Ontology termsGO:0003725 - double-stranded RNA binding (molecular function)
InterPro domainsIPR014720 - Double-stranded RNA-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057205.1 double-stranded RNA-binding protein 1 isoform X2 [Cucumis melo var. makuwa]1.7e-4785.6Show/hide
Query:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIP
        MFKTKLQELCHRKSY+LPEYSVVKQGQDHDPRFEATVTVDGKQF S  PSKSSKQAQNDAAKLAFDFFSLPS PQP  QL   CPQP+LPESS P KLIP
Subjt:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIP

Query:  CIPPFPHPSLNLSSFPQPSLPSQLG
         I PF  PSL+LSSFPQPSLPSQLG
Subjt:  CIPPFPHPSLNLSSFPQPSLPSQLG

XP_004141127.1 double-stranded RNA-binding protein 1 [Cucumis sativus]8.2e-5088Show/hide
Query:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIP
        MFKTKLQELCHRKSY+LPEYSVVKQGQDHDPRFEATVTVDGKQF SP PSKSSKQAQNDAAKLAFDFFSLPS PQPP   EQ CPQP+LP+SS P KLIP
Subjt:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIP

Query:  CIPPFPHPSLNLSSFPQPSLPSQLG
         IPPFP PSLNLSSFPQPSL SQLG
Subjt:  CIPPFPHPSLNLSSFPQPSLPSQLG

XP_008464954.1 PREDICTED: double-stranded RNA-binding protein 1 isoform X1 [Cucumis melo]1.7e-4785.6Show/hide
Query:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIP
        MFKTKLQELCHRKSY+LPEYSVVKQGQDHDPRFEATVTVDGKQF S  PSKSSKQAQNDAAKLAFDFFSLPS PQP  QL   CPQP+LPESS P KLIP
Subjt:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIP

Query:  CIPPFPHPSLNLSSFPQPSLPSQLG
         I PF  PSL+LSSFPQPSLPSQLG
Subjt:  CIPPFPHPSLNLSSFPQPSLPSQLG

XP_038904852.1 double-stranded RNA-binding protein 1-like isoform X1 [Benincasa hispida]9.7e-5184Show/hide
Query:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIP
        MFKT+LQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQF S +P KSSKQAQN+AAK+AFDFFSLPSSPQPP Q +  CPQP+LPESSPP KLIP
Subjt:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIP

Query:  CIPPFPHPSLNLSSFPQPSLPSQLG
        CIPPF H SL++SSFPQP+LPS LG
Subjt:  CIPPFPHPSLNLSSFPQPSLPSQLG

XP_038904854.1 double-stranded RNA-binding protein 1-like isoform X2 [Benincasa hispida]9.7e-5184Show/hide
Query:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIP
        MFKT+LQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQF S +P KSSKQAQN+AAK+AFDFFSLPSSPQPP Q +  CPQP+LPESSPP KLIP
Subjt:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIP

Query:  CIPPFPHPSLNLSSFPQPSLPSQLG
        CIPPF H SL++SSFPQP+LPS LG
Subjt:  CIPPFPHPSLNLSSFPQPSLPSQLG

TrEMBL top hitse value%identityAlignment
A0A0A0LI49 DRBM domain-containing protein2.0e-4987.9Show/hide
Query:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIP
        MFKTKLQELCHRKSY+LPEYSVVKQGQDHDPRFEATVTVDGKQF SP PSKSSKQAQNDAAKLAFDFFSLPS PQPP   EQ CPQP+LP+SS P KLIP
Subjt:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIP

Query:  CIPPFPHPSLNLSSFPQPSLPSQL
         IPPFP PSLNLSSFPQPSL SQL
Subjt:  CIPPFPHPSLNLSSFPQPSLPSQL

A0A1S3CMN7 double-stranded RNA-binding protein 1 isoform X28.3e-4885.6Show/hide
Query:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIP
        MFKTKLQELCHRKSY+LPEYSVVKQGQDHDPRFEATVTVDGKQF S  PSKSSKQAQNDAAKLAFDFFSLPS PQP  QL   CPQP+LPESS P KLIP
Subjt:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIP

Query:  CIPPFPHPSLNLSSFPQPSLPSQLG
         I PF  PSL+LSSFPQPSLPSQLG
Subjt:  CIPPFPHPSLNLSSFPQPSLPSQLG

A0A1S3CMT3 double-stranded RNA-binding protein 1 isoform X18.3e-4885.6Show/hide
Query:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIP
        MFKTKLQELCHRKSY+LPEYSVVKQGQDHDPRFEATVTVDGKQF S  PSKSSKQAQNDAAKLAFDFFSLPS PQP  QL   CPQP+LPESS P KLIP
Subjt:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIP

Query:  CIPPFPHPSLNLSSFPQPSLPSQLG
         I PF  PSL+LSSFPQPSLPSQLG
Subjt:  CIPPFPHPSLNLSSFPQPSLPSQLG

A0A5A7UUH6 Double-stranded RNA-binding protein 1 isoform X28.3e-4885.6Show/hide
Query:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIP
        MFKTKLQELCHRKSY+LPEYSVVKQGQDHDPRFEATVTVDGKQF S  PSKSSKQAQNDAAKLAFDFFSLPS PQP  QL   CPQP+LPESS P KLIP
Subjt:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIP

Query:  CIPPFPHPSLNLSSFPQPSLPSQLG
         I PF  PSL+LSSFPQPSLPSQLG
Subjt:  CIPPFPHPSLNLSSFPQPSLPSQLG

A0A6J1EVN0 double-stranded RNA-binding protein 1-like2.6e-4177.24Show/hide
Query:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIP
        MFKTKLQELCHRKSY+LP YSVVKQGQDHDPRFEATVTV G +F S  P KSSKQAQNDAAKLAFDFFSLPSS    P+LE F PQP  PESSPPL+ + 
Subjt:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIP

Query:  CIPPFPHPSLNLSSFPQPSLPSQ
          P F HPSL++SSFPQPSLPSQ
Subjt:  CIPPFPHPSLNLSSFPQPSLPSQ

SwissProt top hitse value%identityAlignment
B7E321 Double-stranded RNA-binding protein 57.3e-0944Show/hide
Query:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFSL--PSS
        M+K +LQEL  R  + LP Y   ++G DH PRF+ATVT +G+ F  P    + +QA++ AA++A    SL  PSS
Subjt:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFSL--PSS

Q5N8Z0 Double-stranded RNA-binding protein 16.0e-1147.62Show/hide
Query:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPL-PSKSSKQAQNDAAKLAFDFF-SLPSSPQPPPQLEQ
        M+K++LQELC ++ +  PEY+    G  H P F ATV+V+G +FR+P   ++S+K+A N AAK AFD   SLP  P PPP   Q
Subjt:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPL-PSKSSKQAQNDAAKLAFDFF-SLPSSPQPPPQLEQ

Q8GY79 Double-stranded RNA-binding protein 59.6e-0939.13Show/hide
Query:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFS
        M+K +LQEL  R  + LP Y+ +++G DH PRF+A+V  +G+ F SP    + +QA++ AA+++ +  S
Subjt:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFS

Q9LJF5 Double-stranded RNA-binding protein 39.6e-0940.58Show/hide
Query:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFS
        M+K +LQEL  R  + LP Y+  ++G DH PRF+A+V  +G+ F SP    + +QA++ AA++A    S
Subjt:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFS

Q9SKN2 Double-stranded RNA-binding protein 21.5e-0942.03Show/hide
Query:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFS
        M+K +LQEL  R  + LP Y+ +++G DH PRF+ATV  +G+ F SP    + +QA++ AA++A +  S
Subjt:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFS

Arabidopsis top hitse value%identityAlignment
AT2G28380.1 dsRNA-binding protein 21.0e-1042.03Show/hide
Query:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFS
        M+K +LQEL  R  + LP Y+ +++G DH PRF+ATV  +G+ F SP    + +QA++ AA++A +  S
Subjt:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFS

AT3G26932.1 dsRNA-binding protein 36.8e-1040.58Show/hide
Query:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFS
        M+K +LQEL  R  + LP Y+  ++G DH PRF+A+V  +G+ F SP    + +QA++ AA++A    S
Subjt:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFS

AT3G26932.2 dsRNA-binding protein 36.8e-1040.58Show/hide
Query:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFS
        M+K +LQEL  R  + LP Y+  ++G DH PRF+A+V  +G+ F SP    + +QA++ AA++A    S
Subjt:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFS

AT5G41070.1 dsRNA-binding protein 56.8e-1039.13Show/hide
Query:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFS
        M+K +LQEL  R  + LP Y+ +++G DH PRF+A+V  +G+ F SP    + +QA++ AA+++ +  S
Subjt:  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCAAAACAAAGCTTCAAGAGCTCTGTCATCGTAAATCTTACCAATTACCTGAATATTCCGTTGTTAAACAAGGTCAAGACCACGATCCACGCTTTGAAGCCACAGT
CACCGTCGACGGCAAACAATTCCGCTCACCGCTTCCTTCTAAGTCTTCCAAGCAAGCACAGAACGATGCTGCTAAGCTTGCTTTTGACTTCTTTTCTCTTCCTTCTTCAC
CGCAACCGCCGCCGCAGCTGGAGCAATTCTGCCCTCAACCAATTTTGCCAGAATCATCTCCTCCGCTGAAACTAATTCCTTGCATTCCCCCATTTCCTCACCCGTCTCTA
AATTTATCTTCTTTTCCTCAGCCCTCCTTGCCTTCGCAATTGGGTATGACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCAAAACAAAGCTTCAAGAGCTCTGTCATCGTAAATCTTACCAATTACCTGAATATTCCGTTGTTAAACAAGGTCAAGACCACGATCCACGCTTTGAAGCCACAGT
CACCGTCGACGGCAAACAATTCCGCTCACCGCTTCCTTCTAAGTCTTCCAAGCAAGCACAGAACGATGCTGCTAAGCTTGCTTTTGACTTCTTTTCTCTTCCTTCTTCAC
CGCAACCGCCGCCGCAGCTGGAGCAATTCTGCCCTCAACCAATTTTGCCAGAATCATCTCCTCCGCTGAAACTAATTCCTTGCATTCCCCCATTTCCTCACCCGTCTCTA
AATTTATCTTCTTTTCCTCAGCCCTCCTTGCCTTCGCAATTGGGTATGACTTAA
Protein sequenceShow/hide protein sequence
MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIPCIPPFPHPSL
NLSSFPQPSLPSQLGMT