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HG10019628 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019628
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLipoxygenase
Genome locationChr04:23948483..23948815
RNA-Seq ExpressionHG10019628
SyntenyHG10019628
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0006360 - transcription by RNA polymerase I (biological process)
GO:0006633 - fatty acid biosynthetic process (biological process)
GO:0031408 - oxylipin biosynthetic process (biological process)
GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain (biological process)
GO:0000439 - transcription factor TFIIH core complex (cellular component)
GO:0005675 - transcription factor TFIIH holo complex (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000907 - Lipoxygenase
IPR013819 - Lipoxygenase, C-terminal
IPR036226 - Lipoxigenase, C-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK21643.1 lipoxygenase 2 [Cucumis melo var. makuwa]2.6e-2267.09Show/hide
Query:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH
        M+LSSSVY+ +WRFD+QA  +DL RRGMA+ KKDE+G+D        +LEL IKDYPFANDGLILWNAL++WVT+YVNH
Subjt:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH

XP_004142237.1 lipoxygenase 2, chloroplastic [Cucumis sativus]3.8e-2164.56Show/hide
Query:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH
        ++LSSS+Y+ +WRFD+QAL +DL RRGMA+ KK ++G+D        VLELAIKDYPFANDGL+LWNAL++WVT+YVNH
Subjt:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH

XP_004142238.3 lipoxygenase 2, chloroplastic [Cucumis sativus]2.7e-1964.56Show/hide
Query:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH
        ++LSSS Y KEWRFD QAL +DL  RGMA+ K+D  G+D        VLEL IKDYPFANDGL+LWNAL++WVT+YVNH
Subjt:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH

XP_008449754.1 PREDICTED: lipoxygenase 2, chloroplastic-like [Cucumis melo]2.6e-2267.09Show/hide
Query:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH
        M+LSSSVY+ +WRFD+QA  +DL RRGMA+ KKDE+G+D        +LEL IKDYPFANDGLILWNAL++WVT+YVNH
Subjt:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH

XP_038902235.1 lipoxygenase 2, chloroplastic-like [Benincasa hispida]1.1e-2372.15Show/hide
Query:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH
        M+LSSSVYKKEWRFD+QAL +DL RRGMA+ K        KD +GH+VLELAIKDYPFANDGL+LWNAL+ WVT+YVNH
Subjt:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH

TrEMBL top hitse value%identityAlignment
A0A1S3BNQ1 Lipoxygenase1.3e-2267.09Show/hide
Query:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH
        M+LSSSVY+ +WRFD+QA  +DL RRGMA+ KKDE+G+D        +LEL IKDYPFANDGLILWNAL++WVT+YVNH
Subjt:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH

A0A1S3BNU6 lipoxygenase 2, chloroplastic-like1.1e-1863.29Show/hide
Query:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH
        ++LSSS Y KEWRFD+QAL +DL  RGMA+ K D  G+D        V EL IKDYPFANDGL+LWNAL++WVT+YVNH
Subjt:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH

A0A5A7TD55 Lipoxygenase1.3e-2267.09Show/hide
Query:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH
        M+LSSSVY+ +WRFD+QA  +DL RRGMA+ KKDE+G+D        +LEL IKDYPFANDGLILWNAL++WVT+YVNH
Subjt:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH

A0A5A7TDY8 Lipoxygenase1.1e-1863.29Show/hide
Query:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH
        ++LSSS Y KEWRFD+QAL +DL  RGMA+ K D  G+D        V EL IKDYPFANDGL+LWNAL++WVT+YVNH
Subjt:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH

A0A5D3DDP9 Lipoxygenase1.3e-2267.09Show/hide
Query:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH
        M+LSSSVY+ +WRFD+QA  +DL RRGMA+ KKDE+G+D        +LEL IKDYPFANDGLILWNAL++WVT+YVNH
Subjt:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH

SwissProt top hitse value%identityAlignment
O24370 Linoleate 13S-lipoxygenase 2-1, chloroplastic8.6e-1651.9Show/hide
Query:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH
        ++LSS  Y  EWRFDQ+AL  +L  RG+A          V+D +  + L+LAI+DYPFANDGL+LW+ L  WVT YVNH
Subjt:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH

P38418 Lipoxygenase 2, chloroplastic1.1e-1552.5Show/hide
Query:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKD-EHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH
        ++LSS+VY K WRFDQ+ L  DL +RG+A+  K  EHG           + L I DYPFANDGLILW+A+ +WVT YV H
Subjt:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKD-EHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH

P93184 Lipoxygenase 2.1, chloroplastic1.6e-1448.1Show/hide
Query:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH
        ++LSS  Y ++WRFD +AL +DL RRGMA          V++ +G   LELAI+DYP+ANDGL++W+A+  W   YV H
Subjt:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH

Q8GSM3 Lipoxygenase 2.2, chloroplastic2.3e-1651.9Show/hide
Query:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH
        M++SS+ Y K+WRFD +AL +DL RRGMA          V+ EDG   LELAI+DYP+ANDGL++W+A+  W + YV H
Subjt:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH

R9WS04 Lipoxygenase 2, chloroplastic3.8e-1649.37Show/hide
Query:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH
        M+LSS  Y ++WRFD +AL  DL  RGMA          V+DE   + ++L I+DYPFANDGL+LW+A+  W T Y+NH
Subjt:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH

Arabidopsis top hitse value%identityAlignment
AT1G17420.1 lipoxygenase 33.7e-1447.44Show/hide
Query:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDE-HGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYV
        M++S++ YK  WRFD + L  DL RRGMA P   + HG           L+L I+DYP+ANDGL+LW+A+  WV  YV
Subjt:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDE-HGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYV

AT1G67560.1 PLAT/LH2 domain-containing lipoxygenase family protein9.1e-1344.3Show/hide
Query:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH
        M+LSS+ YK  WRFD + L  DL RRGMA+          +D      + L I DYP+A DGL++W A+ D V  YV H
Subjt:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH

AT1G72520.1 PLAT/LH2 domain-containing lipoxygenase family protein2.8e-1446.15Show/hide
Query:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDE-HGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYV
        +++SS+ YK +WRFD + L  DL RRGMA P   + HG           L+L ++DYP+ANDGL+LW+A+  WV  YV
Subjt:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDE-HGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYV

AT3G22400.1 PLAT/LH2 domain-containing lipoxygenase family protein2.6e-1246.05Show/hide
Query:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKY
        M++SSS+Y K W F +QAL  DL +RG+A          V+D +  N ++L I+DYPFA DGL +W+A+  WVT+Y
Subjt:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKY

AT3G45140.1 lipoxygenase 27.9e-1752.5Show/hide
Query:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKD-EHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH
        ++LSS+VY K WRFDQ+ L  DL +RG+A+  K  EHG           + L I DYPFANDGLILW+A+ +WVT YV H
Subjt:  MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKD-EHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACTTAGTTCTTCAGTGTACAAGAAAGAGTGGCGATTTGACCAACAGGCACTCTCCGATGACTTATTTCGTAGAGGAATGGCAAAACCAAAAAAAGATGAACATGG
CAAGGATGTGAAAGATGAAGATGGTCATAATGTTCTTGAGTTGGCCATCAAAGACTACCCTTTTGCAAATGATGGTCTCATCTTATGGAATGCCCTAGTGGATTGGGTGA
CAAAATATGTGAATCACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAACTTAGTTCTTCAGTGTACAAGAAAGAGTGGCGATTTGACCAACAGGCACTCTCCGATGACTTATTTCGTAGAGGAATGGCAAAACCAAAAAAAGATGAACATGG
CAAGGATGTGAAAGATGAAGATGGTCATAATGTTCTTGAGTTGGCCATCAAAGACTACCCTTTTGCAAATGATGGTCTCATCTTATGGAATGCCCTAGTGGATTGGGTGA
CAAAATATGTGAATCACTAG
Protein sequenceShow/hide protein sequence
MKLSSSVYKKEWRFDQQALSDDLFRRGMAKPKKDEHGKDVKDEDGHNVLELAIKDYPFANDGLILWNALVDWVTKYVNH