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HG10019629 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019629
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLipoxygenase
Genome locationChr04:23949077..23949310
RNA-Seq ExpressionHG10019629
SyntenyHG10019629
Gene Ontology termsGO:0006289 - nucleotide-excision repair (biological process)
GO:0006360 - transcription by RNA polymerase I (biological process)
GO:0006633 - fatty acid biosynthetic process (biological process)
GO:0031408 - oxylipin biosynthetic process (biological process)
GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain (biological process)
GO:0000439 - transcription factor TFIIH core complex (cellular component)
GO:0005675 - transcription factor TFIIH holo complex (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000907 - Lipoxygenase
IPR013819 - Lipoxygenase, C-terminal
IPR036226 - Lipoxigenase, C-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649495.1 hypothetical protein Csa_018136 [Cucumis sativus]4.4e-2269.86Show/hide
Query:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHWYVRRYIRT
        FFL  D TL  LGIELTRPP++   EQWK++FTP    T++WLWRLAKAHVLSHDSCIHQLVIHWYV  Y+ T
Subjt:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHWYVRRYIRT

XP_004142238.3 lipoxygenase 2, chloroplastic [Cucumis sativus]6.4e-2175.38Show/hide
Query:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW
        FFL  D TLM LGIELTRPPM+   EQWK++FTP    T+LWLWR AKAHVLSHDSCIHQLVIHW
Subjt:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW

XP_008449947.1 PREDICTED: lipoxygenase 2, chloroplastic-like, partial [Cucumis melo]4.9e-2175.38Show/hide
Query:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW
        FFL  D TLM LGIELTRPPM+   EQWK++FTP  + T++WLWRLAKAHVLSHDSCIHQLVIHW
Subjt:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW

XP_038902001.1 lipoxygenase 2, chloroplastic-like [Benincasa hispida]4.0e-2383.08Show/hide
Query:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW
        FFLKPD TLM LGIELTRPPM+ K  QWK++FTPS E TN+WLWRLAKAHVLSHDSCIHQLVIHW
Subjt:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW

XP_038902235.1 lipoxygenase 2, chloroplastic-like [Benincasa hispida]2.4e-2075.38Show/hide
Query:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW
        FFLK D TLM LGIELTRPPM+  + QWK+LF P IE T++WLWRLAKAHVL+HDSCIHQL+IHW
Subjt:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW

TrEMBL top hitse value%identityAlignment
A0A0A0KX68 Uncharacterized protein2.9e-1972.31Show/hide
Query:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW
        FFL  D TL  LGIELTRPPM  K  QWK++F+PS + TN WLWRLAKAHVL+HDSC+HQLVIHW
Subjt:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW

A0A1S3BNU6 lipoxygenase 2, chloroplastic-like2.4e-2175.38Show/hide
Query:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW
        FFL  D TLM LGIELTRPPM+   EQWK++FTP  + T++WLWRLAKAHVLSHDSCIHQLVIHW
Subjt:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW

A0A1S4DXP8 Lipoxygenase2.2e-1969.23Show/hide
Query:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW
        FFL  D TL+ LGIELTRPP++   +QWK++F P    T++WLWRLAKAHVLSHDSCIHQLVIHW
Subjt:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW

A0A5A7TH32 Lipoxygenase2.9e-1972.31Show/hide
Query:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW
        FFL  D TL  LGIELTRPPM  K  QWK++F+PS + TN WLWRLAKAHVL+HDSC+HQLVIHW
Subjt:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW

A0A5D3DDX5 Lipoxygenase2.9e-1972.31Show/hide
Query:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW
        FFL  D TL  LGIELTRPPM  K  QWK++F+PS + TN WLWRLAKAHVL+HDSC+HQLVIHW
Subjt:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW

SwissProt top hitse value%identityAlignment
O24370 Linoleate 13S-lipoxygenase 2-1, chloroplastic2.4e-1560.61Show/hide
Query:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPS-IEGTNLWLWRLAKAHVLSHDSCIHQLVIHW
        FFL P  TL  L IELTRPP++ K  QWK++++P+    T  WLW+LAKAHVLSHDS  HQLV HW
Subjt:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPS-IEGTNLWLWRLAKAHVLSHDSCIHQLVIHW

P38418 Lipoxygenase 2, chloroplastic3.5e-1453.85Show/hide
Query:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW
        FFL  D TL  + IELT PP   K  QWK++FTP  + T+ WLW LAK H +SHD+  HQL+ HW
Subjt:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW

P93184 Lipoxygenase 2.1, chloroplastic7.1e-1555.22Show/hide
Query:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEG--TNLWLWRLAKAHVLSHDSCIHQLVIHW
        FFL  D TL  + IELTRP  ++K  QW+++FTP  +G  T  WLW+LAKAH+L+HD+ +HQLV HW
Subjt:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEG--TNLWLWRLAKAHVLSHDSCIHQLVIHW

Q8GSM2 Lipoxygenase 2.3, chloroplastic1.6e-1458.46Show/hide
Query:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW
        FFL  + TLM L IELTRP    K  QWK+ FT   + T  WLW+LAKAHVL+HD+  HQLV HW
Subjt:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW

R9WS04 Lipoxygenase 2, chloroplastic3.5e-1459.38Show/hide
Query:  FLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW
        FL    TL  L IELTRPP   K  QWK ++TP  + T+ WLW+LAKAHVL+HDS  HQLV HW
Subjt:  FLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW

Arabidopsis top hitse value%identityAlignment
AT1G17420.1 lipoxygenase 33.7e-1147.69Show/hide
Query:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW
        FFL    TL  + IEL+ PP   K    K++ TP ++ T+ W+W+LAKAHV S+D+ +HQLV HW
Subjt:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW

AT1G67560.1 PLAT/LH2 domain-containing lipoxygenase family protein1.2e-0944.12Show/hide
Query:  TLFFFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW
        T+FF+ K +  L  L IEL+ PP    +   K ++T   + T  W+W+LAKAHV S+D+ +HQLV HW
Subjt:  TLFFFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW

AT1G72520.1 PLAT/LH2 domain-containing lipoxygenase family protein6.4e-1144.83Show/hide
Query:  TLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW
        TL  + IEL+ P     +++ K++ TP ++ T+ W+W+LAKAHV S+D+ +HQLV HW
Subjt:  TLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW

AT3G45140.1 lipoxygenase 22.5e-1553.85Show/hide
Query:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW
        FFL  D TL  + IELT PP   K  QWK++FTP  + T+ WLW LAK H +SHD+  HQL+ HW
Subjt:  FFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATTGTTCTTCTTCCTGAAGCCAGATGTCACTTTGATGTCATTGGGTATTGAGCTAACTCGACCGCCAATGGAGCGGAAAGACGAACAATGGAAAAAACTTTTCAC
ACCAAGCATTGAGGGCACAAATTTGTGGCTATGGAGGCTGGCAAAAGCCCATGTCCTTTCTCACGATTCCTGTATTCACCAACTTGTTATTCACTGGTATGTACGTCGAT
ACATACGTACATAG
mRNA sequenceShow/hide mRNA sequence
ATGACATTGTTCTTCTTCCTGAAGCCAGATGTCACTTTGATGTCATTGGGTATTGAGCTAACTCGACCGCCAATGGAGCGGAAAGACGAACAATGGAAAAAACTTTTCAC
ACCAAGCATTGAGGGCACAAATTTGTGGCTATGGAGGCTGGCAAAAGCCCATGTCCTTTCTCACGATTCCTGTATTCACCAACTTGTTATTCACTGGTATGTACGTCGAT
ACATACGTACATAG
Protein sequenceShow/hide protein sequence
MTLFFFLKPDVTLMSLGIELTRPPMERKDEQWKKLFTPSIEGTNLWLWRLAKAHVLSHDSCIHQLVIHWYVRRYIRT