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HG10019772 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019772
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionNuclear pore protein
Genome locationChr04:25352819..25353591
RNA-Seq ExpressionHG10019772
SyntenyHG10019772
Gene Ontology termsGO:0006606 - protein import into nucleus (biological process)
GO:0016973 - poly(A)+ mRNA export from nucleus (biological process)
GO:0005643 - nuclear pore (cellular component)
GO:0016020 - membrane (cellular component)
GO:0017056 - structural constituent of nuclear pore (molecular function)
InterPro domainsIPR007231 - Nucleoporin interacting component Nup93/Nic96


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6580922.1 Nuclear pore complex protein NUP93A, partial [Cucurbita argyrosperma subsp. sororia]1.6e-25100Show/hide
Query:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
        MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
Subjt:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
XP_022934372.1 nuclear pore complex protein NUP93A-like [Cucurbita moschata]1.6e-25100Show/hide
Query:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
        MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
Subjt:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
XP_022983704.1 nuclear pore complex protein NUP93A-like [Cucurbita maxima]1.6e-25100Show/hide
Query:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
        MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
Subjt:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
XP_023527489.1 nuclear pore complex protein NUP93A-like isoform X1 [Cucurbita pepo subsp. pepo]1.6e-25100Show/hide
Query:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
        MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
Subjt:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
XP_038903816.1 nuclear pore complex protein NUP93A [Benincasa hispida]1.6e-25100Show/hide
Query:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
        MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
Subjt:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
TrEMBL top hitse value%identityAlignment
A0A0A0LF50 Nuclear pore protein7.8e-26100Show/hide
Query:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
        MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
Subjt:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
A0A5A7UK31 Nuclear pore complex protein NUP93A7.8e-26100Show/hide
Query:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
        MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
Subjt:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
A0A5D3DPW0 Nuclear pore complex protein NUP93A7.8e-26100Show/hide
Query:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
        MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
Subjt:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
A0A6J1F2K2 Nuclear pore protein7.8e-26100Show/hide
Query:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
        MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
Subjt:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
A0A6J1J890 Nuclear pore protein7.8e-26100Show/hide
Query:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
        MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
Subjt:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
SwissProt top hitse value%identityAlignment
F4J284 Nuclear pore complex protein NUP93B9.8e-2690.77Show/hide
Query:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
        MANDQ+MSGWTDLLHSSTKLLEQAAPS+QFPPLQRNLDQLE LS+KLKAKTLR EAP+QSIAATR
Subjt:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
O22224 Nuclear pore complex protein NUP93A1.3e-2590.77Show/hide
Query:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
        MANDQ+MSGWTDLLHSS+KLLEQAAPS+QFPPLQRNLDQLE LSKKLKAKTLR EAP+QSIAATR
Subjt:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
Arabidopsis top hitse value%identityAlignment
AT2G41620.1 Nucleoporin interacting component (Nup93/Nic96-like) family protein9.1e-2790.77Show/hide
Query:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
        MANDQ+MSGWTDLLHSS+KLLEQAAPS+QFPPLQRNLDQLE LSKKLKAKTLR EAP+QSIAATR
Subjt:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
AT3G57350.1 Nucleoporin interacting component (Nup93/Nic96-like) family protein7.0e-2790.77Show/hide
Query:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR
        MANDQ+MSGWTDLLHSSTKLLEQAAPS+QFPPLQRNLDQLE LS+KLKAKTLR EAP+QSIAATR
Subjt:  MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAACGACCAAGACATGAGTGGCTGGACTGATCTGCTTCACTCTTCTACAAAGCTCCTCGAACAAGCTGCTCCATCAGCCCAATTCCCTCCTCTCCAGAGGAACTT
AGATCAGTTAGAAGTGTTATCTAAAAAGCTCAAGGCGAAGACCCTGAGAACTGAGGCACCTACACAATCTATTGCTGCTACAAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGAACGACCAAGACATGAGTGGCTGGACTGATCTGCTTCACTCTTCTACAAAGCTCCTCGAACAAGCTGCTCCATCAGCCCAATTCCCTCCTCTCCAGAGGAACTT
AGATCAGTTAGAAGTGTTATCTAAAAAGCTCAAGGCGAAGACCCTGAGAACTGAGGCACCTACACAATCTATTGCTGCTACAAGGTAG
Protein sequenceShow/hide protein sequence
MANDQDMSGWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEVLSKKLKAKTLRTEAPTQSIAATR