; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10019817 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019817
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA-directed RNA polymerase V subunit 5A
Genome locationChr04:25759789..25769034
RNA-Seq ExpressionHG10019817
SyntenyHG10019817
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0055029 - nuclear DNA-directed RNA polymerase complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsIPR000783 - RNA polymerase, subunit H/Rpb5 C-terminal
IPR001251 - CRAL-TRIO lipid binding domain
IPR005571 - RNA polymerase, Rpb5, N-terminal
IPR035913 - RPB5-like RNA polymerase subunit superfamily
IPR036710 - RNA polymerase Rpb5, N-terminal domain superfamily
IPR036865 - CRAL-TRIO lipid binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6580899.1 hypothetical protein SDJN03_20901, partial [Cucurbita argyrosperma subsp. sororia]1.2e-13188.01Show/hide
Query:  SYNSAKRIREKSEKKIEAEMGSTPNDFSVVILPSDGGIDSRPLLSD--KDKESEEADNWHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKY
        S + A+    +SEK+IEA+MGSTPNDFSV+ILPS+ GIDSRPLL+D  KDKESEEA+NWHDC QNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKY
Subjt:  SYNSAKRIREKSEKKIEAEMGSTPNDFSVVILPSDGGIDSRPLLSD--KDKESEEADNWHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKY

Query:  FPAVVVSGERLKKYIFHKFQSELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVS
        +PAVVVSGERLKKYI HKFQ+ELSEGPFC+VYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQ LYFVHPGLRSRLVLAT GRFFLSG LYWKIKYVS
Subjt:  FPAVVVSGERLKKYIFHKFQSELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVS

Query:  RLQYLSEDIKKGEVDIPDFVKSHDEVLEHRPLTDYGIEPDSLNVTEAPYSANSYGRYEERWMSRQYM
        RLQYLS+DIKKGEV+IPDFVKSHDEVLEHRPLTDYGIEPDSLNVT APYSA+S+GRYEERW SRQYM
Subjt:  RLQYLSEDIKKGEVDIPDFVKSHDEVLEHRPLTDYGIEPDSLNVTEAPYSANSYGRYEERWMSRQYM

XP_004136651.3 rho GTPase-activating protein 68F [Cucumis sativus]1.1e-13293.93Show/hide
Query:  MGSTPNDFSVVILPSDGGIDSRPLLSDKDKESEEADNWHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLKKYIFHKFQS
        MGSTPNDFSVVILPSDGGIDSRPLL DKDKESE+AD+WHDCSQNLSSDEDFSDLDLLQFVRLEG+DK GNRILRVVGKYFPAVVVSGERLK+YIFHKFQ+
Subjt:  MGSTPNDFSVVILPSDGGIDSRPLLSDKDKESEEADNWHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLKKYIFHKFQS

Query:  ELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEVDIPDFVK
        ELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQ LYFVHPGLRSRLVLATFGRFFLSGGLYWKIKY+SRLQYLSEDIKKGEV+IPDFVK
Subjt:  ELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEVDIPDFVK

Query:  SHDEVLEHRPLTDYGIEPDSLNVTEAPYSANSYGRYEERWMSRQYMT
        SHD+VLEHRPLTDYGIEPDSLNVTE P+SANS  RYEERWMSRQYMT
Subjt:  SHDEVLEHRPLTDYGIEPDSLNVTEAPYSANSYGRYEERWMSRQYMT

XP_008443288.1 PREDICTED: rho GTPase-activating protein 68F [Cucumis melo]1.1e-13495.95Show/hide
Query:  MGSTPNDFSVVILPSDGGIDSRPLLSDKDKESEEADNWHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLKKYIFHKFQS
        MGSTPNDFSVVILPSDGGIDSRPLLSDKDKE E+AD+WHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLK+YIFHKFQ+
Subjt:  MGSTPNDFSVVILPSDGGIDSRPLLSDKDKESEEADNWHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLKKYIFHKFQS

Query:  ELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEVDIPDFVK
        ELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQ LYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEV+IPDFVK
Subjt:  ELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEVDIPDFVK

Query:  SHDEVLEHRPLTDYGIEPDSLNVTEAPYSANSYGRYEERWMSRQYMT
        SHDEVLEHRPLTDYGIEPDSLNVTE PYSANS  RYEERWMSRQYMT
Subjt:  SHDEVLEHRPLTDYGIEPDSLNVTEAPYSANSYGRYEERWMSRQYMT

XP_022935085.1 ganglioside-induced differentiation-associated protein 2 [Cucurbita moschata]2.7e-12891.53Show/hide
Query:  MGSTPNDFSVVILPSDGGIDSRPLLSD--KDKESEEADNWHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLKKYIFHKF
        MGSTPNDFSV+ILPS+ GIDSRPLL+D  KDKESEEA+NWHDC QNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKY+PAVVVSGERLKKYI HKF
Subjt:  MGSTPNDFSVVILPSDGGIDSRPLLSD--KDKESEEADNWHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLKKYIFHKF

Query:  QSELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEVDIPDF
        Q+ELSEGPFC+VYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQ LYFVHPGLRSRLVLAT GRFFLSG LYWKIKYVSRLQYLS+DIKKGEV+IPDF
Subjt:  QSELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEVDIPDF

Query:  VKSHDEVLEHRPLTDYGIEPDSLNVTEAPYSANSYGRYEERWMSRQYM
        VKSHDEVLEHRPLTDYGIEPDSLNVT APYSA+S+GRYEERW SRQYM
Subjt:  VKSHDEVLEHRPLTDYGIEPDSLNVTEAPYSANSYGRYEERWMSRQYM

XP_038905531.1 ganglioside-induced differentiation-associated protein 2 [Benincasa hispida]2.0e-13495.55Show/hide
Query:  MGSTPNDFSVVILPSDGGIDSRPLLSDKDKESEEADNWHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLKKYIFHKFQS
        MGSTPNDFSVVILPSDGGID R LL DKD+ESEEADNWHDC+QNL SDEDFSDLDLLQFVRLEGSDK GNRILRVVGKYFPAVVVSGERLKKYIFHKFQ+
Subjt:  MGSTPNDFSVVILPSDGGIDSRPLLSDKDKESEEADNWHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLKKYIFHKFQS

Query:  ELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEVDIPDFVK
        ELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEV+IPDFVK
Subjt:  ELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEVDIPDFVK

Query:  SHDEVLEHRPLTDYGIEPDSLNVTEAPYSANSYGRYEERWMSRQYMT
        SHDEVLEHRPLTDYGIEPDSLNVTEAPY ANS+GRYEERWMSRQYMT
Subjt:  SHDEVLEHRPLTDYGIEPDSLNVTEAPYSANSYGRYEERWMSRQYMT

TrEMBL top hitse value%identityAlignment
A0A0A0LEY6 CRAL-TRIO domain-containing protein4.4e-13293.52Show/hide
Query:  MGSTPNDFSVVILPSDGGIDSRPLLSDKDKESEEADNWHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLKKYIFHKFQS
        MGSTPNDFSVVILPSDGGIDSRPLL DKDKESE+AD+WHDCSQNLSSDEDFSDLDLLQFVRLEG+DK GNRILRVVGKYFPAVVVSGERLK+YIFHKFQ+
Subjt:  MGSTPNDFSVVILPSDGGIDSRPLLSDKDKESEEADNWHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLKKYIFHKFQS

Query:  ELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEVDIPDFVK
        ELSEGPFCIVYFHTTAQKDDNC GLTILRWIYEELPSDYKDRLQ LYFVHPGLRSRLVLATFGRFFLSGGLYWKIKY+SRLQYLSEDIKKGEV+IPDFVK
Subjt:  ELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEVDIPDFVK

Query:  SHDEVLEHRPLTDYGIEPDSLNVTEAPYSANSYGRYEERWMSRQYMT
        SHD+VLEHRPLTDYGIEPDSLNVTE P+SANS  RYEERWMSRQYMT
Subjt:  SHDEVLEHRPLTDYGIEPDSLNVTEAPYSANSYGRYEERWMSRQYMT

A0A1S3B7Q3 rho GTPase-activating protein 68F5.6e-13595.95Show/hide
Query:  MGSTPNDFSVVILPSDGGIDSRPLLSDKDKESEEADNWHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLKKYIFHKFQS
        MGSTPNDFSVVILPSDGGIDSRPLLSDKDKE E+AD+WHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLK+YIFHKFQ+
Subjt:  MGSTPNDFSVVILPSDGGIDSRPLLSDKDKESEEADNWHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLKKYIFHKFQS

Query:  ELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEVDIPDFVK
        ELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQ LYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEV+IPDFVK
Subjt:  ELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEVDIPDFVK

Query:  SHDEVLEHRPLTDYGIEPDSLNVTEAPYSANSYGRYEERWMSRQYMT
        SHDEVLEHRPLTDYGIEPDSLNVTE PYSANS  RYEERWMSRQYMT
Subjt:  SHDEVLEHRPLTDYGIEPDSLNVTEAPYSANSYGRYEERWMSRQYMT

A0A5D3DPF9 Rho GTPase-activating protein 68F5.6e-13595.95Show/hide
Query:  MGSTPNDFSVVILPSDGGIDSRPLLSDKDKESEEADNWHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLKKYIFHKFQS
        MGSTPNDFSVVILPSDGGIDSRPLLSDKDKE E+AD+WHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLK+YIFHKFQ+
Subjt:  MGSTPNDFSVVILPSDGGIDSRPLLSDKDKESEEADNWHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLKKYIFHKFQS

Query:  ELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEVDIPDFVK
        ELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQ LYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEV+IPDFVK
Subjt:  ELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEVDIPDFVK

Query:  SHDEVLEHRPLTDYGIEPDSLNVTEAPYSANSYGRYEERWMSRQYMT
        SHDEVLEHRPLTDYGIEPDSLNVTE PYSANS  RYEERWMSRQYMT
Subjt:  SHDEVLEHRPLTDYGIEPDSLNVTEAPYSANSYGRYEERWMSRQYMT

A0A6J1F9L3 ganglioside-induced differentiation-associated protein 21.3e-12891.53Show/hide
Query:  MGSTPNDFSVVILPSDGGIDSRPLLSD--KDKESEEADNWHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLKKYIFHKF
        MGSTPNDFSV+ILPS+ GIDSRPLL+D  KDKESEEA+NWHDC QNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKY+PAVVVSGERLKKYI HKF
Subjt:  MGSTPNDFSVVILPSDGGIDSRPLLSD--KDKESEEADNWHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLKKYIFHKF

Query:  QSELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEVDIPDF
        Q+ELSEGPFC+VYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQ LYFVHPGLRSRLVLAT GRFFLSG LYWKIKYVSRLQYLS+DIKKGEV+IPDF
Subjt:  QSELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEVDIPDF

Query:  VKSHDEVLEHRPLTDYGIEPDSLNVTEAPYSANSYGRYEERWMSRQYM
        VKSHDEVLEHRPLTDYGIEPDSLNVT APYSA+S+GRYEERW SRQYM
Subjt:  VKSHDEVLEHRPLTDYGIEPDSLNVTEAPYSANSYGRYEERWMSRQYM

A0A6J1J3J8 ganglioside-induced differentiation-associated protein 28.6e-12890.73Show/hide
Query:  MGSTPNDFSVVILPSDGGIDSRPLLSD--KDKESEEADNWHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLKKYIFHKF
        MGSTPNDFSV+ILPS+ GIDSRPLL+D  KDKESEE +NWHDC+QNLSSDEDFSDLDLLQF RLEGSDKAGNRILRVVGKY+PAVVVSGERLKKYI HKF
Subjt:  MGSTPNDFSVVILPSDGGIDSRPLLSD--KDKESEEADNWHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLKKYIFHKF

Query:  QSELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEVDIPDF
        Q+ELSEGPFC+VYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQ LYFVHPGLRSRLVLAT GRFFLSG LYWKIKYVSRLQYLS+DIKKGEV+IPDF
Subjt:  QSELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEVDIPDF

Query:  VKSHDEVLEHRPLTDYGIEPDSLNVTEAPYSANSYGRYEERWMSRQYM
        VKSHDEVLEHRPLTDYGIEPDSLNVT APYSA+S+GRYEERW SRQYM
Subjt:  VKSHDEVLEHRPLTDYGIEPDSLNVTEAPYSANSYGRYEERWMSRQYM

SwissProt top hitse value%identityAlignment
A8XGH1 DNA-directed RNA polymerases I, II, and III subunit RPABC14.5e-2531.84Show/hide
Query:  ESHRYFLSRRTVLEMLRDRGYTINSSDIDLSLQQFREIYGQSPDVDR-----LKLSAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDTLHGLIL
        E++R +  R+TVL+M+ DRGY +   ++D  L+ F+E +G  P   +     L +   H  DP+ ++ V F     + +  I+ I  Q+  +  +   I+
Subjt:  ESHRYFLSRRTVLEMLRDRGYTINSSDIDLSLQQFREIYGQSPDVDR-----LKLSAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDTLHGLIL

Query:  IVQNQITNQAMKAVELFS--FKVEIFQITDLLVNITKHVLKPNHQVLAEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSSHV
        +VQ  +T  A +++   +  + +E F   +L+VNIT+H L P H V+  EEK +LL +Y +++ QLPR+ + D +ARY+GL +GQVVK+    +    ++
Subjt:  IVQNQITNQAMKAVELFS--FKVEIFQITDLLVNITKHVLKPNHQVLAEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSSHV

Query:  S
        +
Subjt:  S

O81098 DNA-directed RNA polymerases II and IV subunit 5A4.8e-2736.22Show/hide
Query:  ESHRYFLSRRTVLEMLRDRGYTINSSDIDLSLQQFREIYGQSPDVDRLKLSAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDTLHGLILIVQNQ
        E  R +  ++T+++MLRDRGY I  S++ ++ QQF   +G +   + L      R+D S ++ + F     V V  ++    ++ +++     IL+VQ  
Subjt:  ESHRYFLSRRTVLEMLRDRGYTINSSDIDLSLQQFREIYGQSPDVDRLKLSAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDTLHGLILIVQNQ

Query:  ITNQAMKAVELFS--FKVEIFQITDLLVNITKHVLKPNHQVLAEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSSHVS
        +T  A   +   S  F +E+FQ  ++LVNI +HVL P HQVL  EEK+ LL++Y+++E QLPR+  TD IARY+GL++GQVVK+    +    +V+
Subjt:  ITNQAMKAVELFS--FKVEIFQITDLLVNITKHVLKPNHQVLAEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSSHVS

Q9M1H8 DNA-directed RNA polymerase V subunit 5C1.7e-4843.69Show/hide
Query:  EEDGFEGEPSQVEFGT-CLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTINSSDIDLSLQQFREIYGQSPDVDRLKLSAVHRSDPSKRVLVIFCGTGAV
        EE   E   S  + GT C+S   D G  ES R++L+R T  EMLRDRGY +N +++ L+L +FR ++G+ P+++RL++    RSDP K++LV+F GT  +
Subjt:  EEDGFEGEPSQVEFGT-CLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTINSSDIDLSLQQFREIYGQSPDVDRLKLSAVHRSDPSKRVLVIFCGTGAV

Query:  KVNAIRNIAGQIANKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLAEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
         V ++R +  QI+N   LH +IL++Q+++ + A KA+  F F VE F I DLLVNITKH+ +P  ++L +EEK++LL+++++E+KQLP +   D+  RYY
Subjt:  KVNAIRNIAGQIANKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLAEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY

Query:  GLEKGQVVKVTYDGDMTSSHVS
        GL+K QVVK+TY  +     V+
Subjt:  GLEKGQVVKVTYDGDMTSSHVS

Q9M1J2 DNA-directed RNA polymerase V subunit 5A1.5e-7365.37Show/hide
Query:  CLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTINSSDIDLSLQQFREIYGQSPDVDRLKLSAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDT
        CLS Y+D  + ESHRY+L+RR  L+MLRDRGY ++  DI+LSL  FR +YG+ PDVDRL++SA+HRSD +K+V ++F GT  VKVNAIR++   I +++T
Subjt:  CLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTINSSDIDLSLQQFREIYGQSPDVDRLKLSAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDT

Query:  LHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLAEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
        + GLIL++QN +TNQA+KA+ELFSFKVEIFQITDLLVNITKH LKP HQVL +EEK  LLK++SIEEKQLPR+ + DAI RYYGLEKGQVVKV Y G++T
Subjt:  LHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLAEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT

Query:  SSHVS
         SHV+
Subjt:  SSHVS

Q9ZVB9 DNA-directed RNA polymerases IV and V subunit 5B7.4e-6858.33Show/hide
Query:  EGEPSQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTINSSDIDLSLQQFREIYGQSPDVDRLKLSAVHRSDPSKRVLVIFCGTGAVKVNAIR
        EG+  ++  G  +S      + E H+Y+L+RRT +EMLRDRGY ++  DI+LSLQQFR +YG+ PDVD L++SA HR D SK++ V+FCGTG VKVNA+R
Subjt:  EGEPSQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTINSSDIDLSLQQFREIYGQSPDVDRLKLSAVHRSDPSKRVLVIFCGTGAVKVNAIR

Query:  NIAGQIANKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLAEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQ
         IA  + +++ + GLIL++Q+ ITNQA+KAVELFSFKVE+F+ITDLLVN++KHVL+P HQVL ++EK+ LLK++SIEEKQLPR+   D I RYYGLE GQ
Subjt:  NIAGQIANKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLAEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQ

Query:  VVKVTYDGDMTSSHVS
        V+KVTY  +++ SHV+
Subjt:  VVKVTYDGDMTSSHVS

Arabidopsis top hitse value%identityAlignment
AT2G41340.1 RNA polymerase II fifth largest subunit, D5.2e-6958.33Show/hide
Query:  EGEPSQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTINSSDIDLSLQQFREIYGQSPDVDRLKLSAVHRSDPSKRVLVIFCGTGAVKVNAIR
        EG+  ++  G  +S      + E H+Y+L+RRT +EMLRDRGY ++  DI+LSLQQFR +YG+ PDVD L++SA HR D SK++ V+FCGTG VKVNA+R
Subjt:  EGEPSQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTINSSDIDLSLQQFREIYGQSPDVDRLKLSAVHRSDPSKRVLVIFCGTGAVKVNAIR

Query:  NIAGQIANKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLAEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQ
         IA  + +++ + GLIL++Q+ ITNQA+KAVELFSFKVE+F+ITDLLVN++KHVL+P HQVL ++EK+ LLK++SIEEKQLPR+   D I RYYGLE GQ
Subjt:  NIAGQIANKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLAEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQ

Query:  VVKVTYDGDMTSSHVS
        V+KVTY  +++ SHV+
Subjt:  VVKVTYDGDMTSSHVS

AT3G10210.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein1.2e-9470.34Show/hide
Query:  DFSVVILPSDGGIDSRPLLSDKDKESEEADNWHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLKKYIFHKFQSELSEGP
        DFSVV+L SD GID+RP L+  D + +E +NWHDC Q L  DEDFSDLDLLQF  L+G D++GNRI R+VGKYFPA VVS ERLKKYI  K  ++  EGP
Subjt:  DFSVVILPSDGGIDSRPLLSDKDKESEEADNWHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLKKYIFHKFQSELSEGP

Query:  FCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEVDIPDFVKSHDEVL
         C+VY H+T QKDDN PG+TILRWIYE+LPSD KDRLQ++YF+HPGLRSRLV+AT GR  LSGGLYWKIKYVSRLQYL EDIKKGEV+IPDFVK+HD VL
Subjt:  FCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEVDIPDFVKSHDEVL

Query:  EHRPLTDYGIEPDSLNVTEAPYSANSYGRYEERWMS
        EHRPLTDYGIEPD   ++E   S+ S  RYE RW+S
Subjt:  EHRPLTDYGIEPDSLNVTEAPYSANSYGRYEERWMS

AT3G54490.1 RNA polymerase II fifth largest subunit, E1.2e-4943.69Show/hide
Query:  EEDGFEGEPSQVEFGT-CLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTINSSDIDLSLQQFREIYGQSPDVDRLKLSAVHRSDPSKRVLVIFCGTGAV
        EE   E   S  + GT C+S   D G  ES R++L+R T  EMLRDRGY +N +++ L+L +FR ++G+ P+++RL++    RSDP K++LV+F GT  +
Subjt:  EEDGFEGEPSQVEFGT-CLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTINSSDIDLSLQQFREIYGQSPDVDRLKLSAVHRSDPSKRVLVIFCGTGAV

Query:  KVNAIRNIAGQIANKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLAEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
         V ++R +  QI+N   LH +IL++Q+++ + A KA+  F F VE F I DLLVNITKH+ +P  ++L +EEK++LL+++++E+KQLP +   D+  RYY
Subjt:  KVNAIRNIAGQIANKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLAEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY

Query:  GLEKGQVVKVTYDGDMTSSHVS
        GL+K QVVK+TY  +     V+
Subjt:  GLEKGQVVKVTYDGDMTSSHVS

AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein1.1e-7465.37Show/hide
Query:  CLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTINSSDIDLSLQQFREIYGQSPDVDRLKLSAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDT
        CLS Y+D  + ESHRY+L+RR  L+MLRDRGY ++  DI+LSL  FR +YG+ PDVDRL++SA+HRSD +K+V ++F GT  VKVNAIR++   I +++T
Subjt:  CLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTINSSDIDLSLQQFREIYGQSPDVDRLKLSAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDT

Query:  LHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLAEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
        + GLIL++QN +TNQA+KA+ELFSFKVEIFQITDLLVNITKH LKP HQVL +EEK  LLK++SIEEKQLPR+ + DAI RYYGLEKGQVVKV Y G++T
Subjt:  LHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLAEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT

Query:  SSHVS
         SHV+
Subjt:  SSHVS

AT4G35750.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein8.1e-4642.79Show/hide
Query:  SQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLKKYIFHKFQSELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKD
        S  +S  E    ++ L+  ++ G DK G +ILR++GK+FPA  +S + LKKY+  K    L   PF ++Y HT  Q+ +N PG++ LR IY+ +P + +D
Subjt:  SQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLKKYIFHKFQSELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKD

Query:  RLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEVDIPDFVKSHDEVLEHRPLTDYGIEPDSLNVTEAPYSANSYGRYEERWM
         LQ +YF+HPGL+SRL LAT GRF  SGGLY K++Y+SR+ YL E +++ E+++P+FV  HD+ LE+RP+ DYG E D   V       +S   +  R +
Subjt:  RLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEVDIPDFVKSHDEVLEHRPLTDYGIEPDSLNVTEAPYSANSYGRYEERWM

Query:  S
        S
Subjt:  S


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAAGATGGGTTTGAGGGAGAGCCGAGTCAAGTGGAGTTTGGCACTTGCTTGAGTAGCTACATCGACAATGGCACCACTGAGAGCCACAGATACTTTCTTTCTCG
CAGAACAGTCTTGGAGATGCTCAGGGACCGAGGTTACACTATCAACTCCTCTGATATCGACCTCTCTCTTCAACAATTCCGAGAAATTTACGGCCAATCCCCCGACGTTG
ATCGCCTTAAACTATCCGCCGTTCATCGCTCCGATCCCTCCAAAAGAGTCCTTGTAATATTCTGTGGGACTGGTGCAGTAAAAGTTAATGCTATTCGCAATATTGCTGGC
CAAATTGCTAATAAGGACACTTTGCATGGTCTCATTCTAATTGTGCAAAATCAAATTACAAACCAAGCCATGAAAGCAGTTGAGCTTTTCTCGTTCAAGGTTGAAATATT
CCAGATTACTGACTTGCTCGTCAATATCACAAAGCATGTGTTAAAGCCAAACCATCAAGTACTAGCGGAGGAAGAAAAACAAAAGCTTTTGAAACAATACAGTATAGAGG
AAAAACAGCTTCCTCGTATGTTACGTACGGATGCTATTGCTCGATATTATGGACTTGAGAAAGGGCAGGTTGTGAAAGTGACTTACGATGGCGATATGACTAGTTCGCAT
GTTTCCAGTGCAAATTTCATGATTATGGGCTTCTGCAAGAAATCTGTATCCACAATTACTGCAGACATACGTACAAGCTATAATAGCGCGAAACGAATCAGAGAAAAGTC
AGAGAAGAAGATCGAAGCAGAGATGGGCAGCACCCCAAACGATTTCTCAGTCGTCATCCTCCCTTCCGATGGCGGCATCGATTCGCGGCCACTTTTGTCTGACAAAGACA
AAGAGTCTGAAGAGGCTGACAATTGGCACGATTGCTCTCAAAACCTTTCCTCCGATGAGGACTTCTCTGATCTCGATCTCTTGCAGTTTGTCCGTCTTGAGGGCTCCGAC
AAGGCTGGGAATCGCATCCTCCGCGTCGTCGGAAAGTACTTCCCTGCTGTGGTTGTAAGTGGAGAGCGGTTGAAGAAATATATCTTCCATAAATTCCAGAGCGAATTGTC
GGAGGGTCCATTTTGCATTGTGTACTTTCATACTACCGCCCAGAAGGATGATAATTGTCCAGGCTTGACCATCTTGAGGTGGATTTATGAAGAACTTCCATCTGATTACA
AGGATAGACTTCAAGTTCTCTATTTTGTACATCCTGGTCTCCGTTCGAGGCTTGTCTTGGCGACTTTTGGCCGTTTTTTCTTAAGTGGCGGATTGTACTGGAAAATCAAG
TATGTGAGCCGCCTTCAGTATCTTTCAGAAGATATAAAAAAGGGAGAGGTTGATATTCCTGATTTTGTGAAAAGTCACGATGAAGTTCTTGAACACAGACCCCTGACAGA
TTACGGCATAGAACCTGATTCCCTCAACGTCACTGAGGCACCTTATTCTGCCAACTCCTATGGGAGATATGAGGAGAGATGGATGTCAAGGCAGTACATGACCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAAGATGGGTTTGAGGGAGAGCCGAGTCAAGTGGAGTTTGGCACTTGCTTGAGTAGCTACATCGACAATGGCACCACTGAGAGCCACAGATACTTTCTTTCTCG
CAGAACAGTCTTGGAGATGCTCAGGGACCGAGGTTACACTATCAACTCCTCTGATATCGACCTCTCTCTTCAACAATTCCGAGAAATTTACGGCCAATCCCCCGACGTTG
ATCGCCTTAAACTATCCGCCGTTCATCGCTCCGATCCCTCCAAAAGAGTCCTTGTAATATTCTGTGGGACTGGTGCAGTAAAAGTTAATGCTATTCGCAATATTGCTGGC
CAAATTGCTAATAAGGACACTTTGCATGGTCTCATTCTAATTGTGCAAAATCAAATTACAAACCAAGCCATGAAAGCAGTTGAGCTTTTCTCGTTCAAGGTTGAAATATT
CCAGATTACTGACTTGCTCGTCAATATCACAAAGCATGTGTTAAAGCCAAACCATCAAGTACTAGCGGAGGAAGAAAAACAAAAGCTTTTGAAACAATACAGTATAGAGG
AAAAACAGCTTCCTCGTATGTTACGTACGGATGCTATTGCTCGATATTATGGACTTGAGAAAGGGCAGGTTGTGAAAGTGACTTACGATGGCGATATGACTAGTTCGCAT
GTTTCCAGTGCAAATTTCATGATTATGGGCTTCTGCAAGAAATCTGTATCCACAATTACTGCAGACATACGTACAAGCTATAATAGCGCGAAACGAATCAGAGAAAAGTC
AGAGAAGAAGATCGAAGCAGAGATGGGCAGCACCCCAAACGATTTCTCAGTCGTCATCCTCCCTTCCGATGGCGGCATCGATTCGCGGCCACTTTTGTCTGACAAAGACA
AAGAGTCTGAAGAGGCTGACAATTGGCACGATTGCTCTCAAAACCTTTCCTCCGATGAGGACTTCTCTGATCTCGATCTCTTGCAGTTTGTCCGTCTTGAGGGCTCCGAC
AAGGCTGGGAATCGCATCCTCCGCGTCGTCGGAAAGTACTTCCCTGCTGTGGTTGTAAGTGGAGAGCGGTTGAAGAAATATATCTTCCATAAATTCCAGAGCGAATTGTC
GGAGGGTCCATTTTGCATTGTGTACTTTCATACTACCGCCCAGAAGGATGATAATTGTCCAGGCTTGACCATCTTGAGGTGGATTTATGAAGAACTTCCATCTGATTACA
AGGATAGACTTCAAGTTCTCTATTTTGTACATCCTGGTCTCCGTTCGAGGCTTGTCTTGGCGACTTTTGGCCGTTTTTTCTTAAGTGGCGGATTGTACTGGAAAATCAAG
TATGTGAGCCGCCTTCAGTATCTTTCAGAAGATATAAAAAAGGGAGAGGTTGATATTCCTGATTTTGTGAAAAGTCACGATGAAGTTCTTGAACACAGACCCCTGACAGA
TTACGGCATAGAACCTGATTCCCTCAACGTCACTGAGGCACCTTATTCTGCCAACTCCTATGGGAGATATGAGGAGAGATGGATGTCAAGGCAGTACATGACCTAG
Protein sequenceShow/hide protein sequence
MEEDGFEGEPSQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTINSSDIDLSLQQFREIYGQSPDVDRLKLSAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAG
QIANKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLAEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSSH
VSSANFMIMGFCKKSVSTITADIRTSYNSAKRIREKSEKKIEAEMGSTPNDFSVVILPSDGGIDSRPLLSDKDKESEEADNWHDCSQNLSSDEDFSDLDLLQFVRLEGSD
KAGNRILRVVGKYFPAVVVSGERLKKYIFHKFQSELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIK
YVSRLQYLSEDIKKGEVDIPDFVKSHDEVLEHRPLTDYGIEPDSLNVTEAPYSANSYGRYEERWMSRQYMT