; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10019842 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019842
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionSigma factor binding protein 2
Genome locationChr04:26036641..26037060
RNA-Seq ExpressionHG10019842
SyntenyHG10019842
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651179.1 hypothetical protein Csa_002123, partial [Cucumis sativus]6.9e-3485.15Show/hide
Query:  MRVHTSASEFRALVQELTGRDAEFPDPAKFYPA-SCEIMN--DLEKKVVAEE-EEDEQVLLLDSSCDDDFF-SSYESLEDILRRDMMENLGAISTSMINP
        MRVHTSASEFRALVQELTGRDAEFPDP KFYPA SCEIMN  D+EKKVVA E EEDEQ LL+DSSCDDDF  SSYESLEDILRRD+MEN GAISTS+ NP
Subjt:  MRVHTSASEFRALVQELTGRDAEFPDPAKFYPA-SCEIMN--DLEKKVVAEE-EEDEQVLLLDSSCDDDFF-SSYESLEDILRRDMMENLGAISTSMINP

Query:  L
        L
Subjt:  L

XP_008443611.1 PREDICTED: uncharacterized protein LOC103487167 [Cucumis melo]2.5e-5283.1Show/hide
Query:  MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYPASCEI-MNDLEKKVVAEE-EEDEQVL
        MD++L+VSELT T  KKK TTRKRKS +E KQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KFYPASCEI MNDLEKKVVA++ E+DEQ L
Subjt:  MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYPASCEI-MNDLEKKVVAEE-EEDEQVL

Query:  LLDSSCDDDFF-SSYESLEDILRRDMMENLGAISTSMINPLV
        L+DSSCDDDF+ SS+ESLEDILRRD+MEN GAISTS+INPLV
Subjt:  LLDSSCDDDFF-SSYESLEDILRRDMMENLGAISTSMINPLV

XP_011652185.1 uncharacterized protein LOC105434994 [Cucumis sativus]4.8e-5183.33Show/hide
Query:  MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYPA-SCEIMN--DLEKKVVAEE-EEDEQ
        MD+SL+VSELT TMKK   TTRKRKS +E KQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP KFYPA SCEIMN  D+EKKVVA E EEDEQ
Subjt:  MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYPA-SCEIMN--DLEKKVVAEE-EEDEQ

Query:  VLLLDSSCDDDFF-SSYESLEDILRRDMMENLGAISTSMINPLV
         LL+DSSCDDDF  SSYESLEDILRRD+MEN GAISTS+ NPLV
Subjt:  VLLLDSSCDDDFF-SSYESLEDILRRDMMENLGAISTSMINPLV

XP_022147780.1 sigma factor binding protein 2, chloroplastic-like [Momordica charantia]2.9e-2455.4Show/hide
Query:  MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYPASCEIMN-DLEKKVVAEEEED---EQ
        MD++L+VSE    M+  K  TRKRK   +K QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKF+ AS ++   +LEK    +++E+   + 
Subjt:  MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYPASCEIMN-DLEKKVVAEEEED---EQ

Query:  VLLLDSSCDDDFFSSYESLEDILRRDM-MENLGAISTSM
           ++ S DD   S YES E++L R+M MEN    S S+
Subjt:  VLLLDSSCDDDFFSSYESLEDILRRDM-MENLGAISTSM

XP_023539403.1 uncharacterized protein LOC111800056 [Cucurbita pepo subsp. pepo]2.5e-1547.45Show/hide
Query:  MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYP-ASCEIMNDLEKKVVAEEEEDEQVLL
        M+ SLV  ++    K+++   RKRK  D K QPLKVVYISNPMRV  SA+EFR LVQ+LTG+DA      KF P AS E      +K+  ++++D+Q LL
Subjt:  MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYP-ASCEIMNDLEKKVVAEEEEDEQVLL

Query:  L-------DSSCDDDFFSSYESLEDILRRDMMENLGA
        L       + S DD    SYESLE I  RDM++ L A
Subjt:  L-------DSSCDDDFFSSYESLEDILRRDMMENLGA

TrEMBL top hitse value%identityAlignment
A0A0A0LFH5 VQ domain-containing protein2.3e-5183.33Show/hide
Query:  MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYPA-SCEIMN--DLEKKVVAEE-EEDEQ
        MD+SL+VSELT TMKK   TTRKRKS +E KQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP KFYPA SCEIMN  D+EKKVVA E EEDEQ
Subjt:  MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYPA-SCEIMN--DLEKKVVAEE-EEDEQ

Query:  VLLLDSSCDDDFF-SSYESLEDILRRDMMENLGAISTSMINPLV
         LL+DSSCDDDF  SSYESLEDILRRD+MEN GAISTS+ NPLV
Subjt:  VLLLDSSCDDDFF-SSYESLEDILRRDMMENLGAISTSMINPLV

A0A1S3B8H6 uncharacterized protein LOC1034871671.2e-5283.1Show/hide
Query:  MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYPASCEI-MNDLEKKVVAEE-EEDEQVL
        MD++L+VSELT T  KKK TTRKRKS +E KQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KFYPASCEI MNDLEKKVVA++ E+DEQ L
Subjt:  MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYPASCEI-MNDLEKKVVAEE-EEDEQVL

Query:  LLDSSCDDDFF-SSYESLEDILRRDMMENLGAISTSMINPLV
        L+DSSCDDDF+ SS+ESLEDILRRD+MEN GAISTS+INPLV
Subjt:  LLDSSCDDDFF-SSYESLEDILRRDMMENLGAISTSMINPLV

A0A5D3DPQ4 Sigma factor binding protein 21.2e-5283.1Show/hide
Query:  MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYPASCEI-MNDLEKKVVAEE-EEDEQVL
        MD++L+VSELT T  KKK TTRKRKS +E KQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KFYPASCEI MNDLEKKVVA++ E+DEQ L
Subjt:  MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYPASCEI-MNDLEKKVVAEE-EEDEQVL

Query:  LLDSSCDDDFF-SSYESLEDILRRDMMENLGAISTSMINPLV
        L+DSSCDDDF+ SS+ESLEDILRRD+MEN GAISTS+INPLV
Subjt:  LLDSSCDDDFF-SSYESLEDILRRDMMENLGAISTSMINPLV

A0A6J1D137 sigma factor binding protein 2, chloroplastic-like1.4e-2455.4Show/hide
Query:  MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYPASCEIMN-DLEKKVVAEEEED---EQ
        MD++L+VSE    M+  K  TRKRK   +K QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKF+ AS ++   +LEK    +++E+   + 
Subjt:  MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYPASCEIMN-DLEKKVVAEEEED---EQ

Query:  VLLLDSSCDDDFFSSYESLEDILRRDM-MENLGAISTSM
           ++ S DD   S YES E++L R+M MEN    S S+
Subjt:  VLLLDSSCDDDFFSSYESLEDILRRDM-MENLGAISTSM

A0A6J1FKR4 uncharacterized protein LOC1114466391.1e-1346.27Show/hide
Query:  MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDA-EFPDPAKFYPASCEIMNDLEKKVVAEEEEDEQVLL
        M+ SLV  ++    K+++   R RK  D K QPLKVVYISNPMRV  SA+EFR LVQELTG+DA +FP  A    AS +      +K + ++++DEQ+LL
Subjt:  MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDA-EFPDPAKFYPASCEIMNDLEKKVVAEEEEDEQVLL

Query:  ----LDSSCDDDFFSSYESLEDILRRDMMENLGA
            ++ S D     SYES E I  RDM++ L A
Subjt:  ----LDSSCDDDFFSSYESLEDILRRDMMENLGA

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic4.1e-0531.58Show/hide
Query:  MDQS---LVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYPASCEIMNDLEKKVVAEEEEDEQV
        MDQS   L++++  ++    +   ++++      +P+KV YISNPMRV T  S+FR LVQELTG+DA    P+     + ++    E ++  E  + E  
Subjt:  MDQS---LVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYPASCEIMNDLEKKVVAEEEEDEQV

Query:  LLLDSSCDDDFFSS
            S  D++ F++
Subjt:  LLLDSSCDDDFFSS

Q9LDH1 Sigma factor binding protein 1, chloroplastic3.0e-0839.13Show/hide
Query:  MDQSLVVSELTATMKKKKTTTRKRKSRDEKK------QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYPASCEIMN------DLEKKVV
        M+ S      T ++ KKK +   RKS  +KK      +P+KV YISNPMRV T AS+FR LVQELTG+DA    P   Y  S +  N      +L  +V+
Subjt:  MDQSLVVSELTATMKKKKTTTRKRKSRDEKK------QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYPASCEIMN------DLEKKVV

Query:  AEEEEDEQVLLLDSSCDDDFFSSYESL--EDILRRDMM
         +E   E+    DS C       YE L  ED+   D M
Subjt:  AEEEEDEQVLLLDSSCDDDFFSSYESL--EDILRRDMM

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein2.9e-0631.58Show/hide
Query:  MDQS---LVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYPASCEIMNDLEKKVVAEEEEDEQV
        MDQS   L++++  ++    +   ++++      +P+KV YISNPMRV T  S+FR LVQELTG+DA    P+     + ++    E ++  E  + E  
Subjt:  MDQS---LVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYPASCEIMNDLEKKVVAEEEEDEQV

Query:  LLLDSSCDDDFFSS
            S  D++ F++
Subjt:  LLLDSSCDDDFFSS

AT3G56710.1 sigma factor binding protein 12.2e-0939.13Show/hide
Query:  MDQSLVVSELTATMKKKKTTTRKRKSRDEKK------QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYPASCEIMN------DLEKKVV
        M+ S      T ++ KKK +   RKS  +KK      +P+KV YISNPMRV T AS+FR LVQELTG+DA    P   Y  S +  N      +L  +V+
Subjt:  MDQSLVVSELTATMKKKKTTTRKRKSRDEKK------QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYPASCEIMN------DLEKKVV

Query:  AEEEEDEQVLLLDSSCDDDFFSSYESL--EDILRRDMM
         +E   E+    DS C       YE L  ED+   D M
Subjt:  AEEEEDEQVLLLDSSCDDDFFSSYESL--EDILRRDMM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCAGAGTTTAGTGGTAAGTGAGCTGACGGCGACGATGAAGAAGAAGAAAACAACGACGCGAAAAAGGAAATCACGCGATGAAAAGAAGCAACCCCTAAAAGTTGT
GTACATATCTAACCCCATGAGGGTTCATACTAGCGCGTCTGAATTTAGAGCCTTAGTCCAAGAACTGACCGGGAGAGATGCAGAGTTTCCCGACCCGGCTAAATTCTATC
CCGCCTCATGCGAGATCATGAATGATCTCGAGAAGAAAGTAGTAGCAGAAGAAGAAGAAGATGAGCAAGTGTTATTACTTGATTCAAGCTGTGATGATGATTTTTTTAGT
TCATATGAAAGCTTGGAGGATATATTGAGGAGAGATATGATGGAGAACTTGGGGGCCATCTCTACATCTATGATCAATCCTTTGGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCAGAGTTTAGTGGTAAGTGAGCTGACGGCGACGATGAAGAAGAAGAAAACAACGACGCGAAAAAGGAAATCACGCGATGAAAAGAAGCAACCCCTAAAAGTTGT
GTACATATCTAACCCCATGAGGGTTCATACTAGCGCGTCTGAATTTAGAGCCTTAGTCCAAGAACTGACCGGGAGAGATGCAGAGTTTCCCGACCCGGCTAAATTCTATC
CCGCCTCATGCGAGATCATGAATGATCTCGAGAAGAAAGTAGTAGCAGAAGAAGAAGAAGATGAGCAAGTGTTATTACTTGATTCAAGCTGTGATGATGATTTTTTTAGT
TCATATGAAAGCTTGGAGGATATATTGAGGAGAGATATGATGGAGAACTTGGGGGCCATCTCTACATCTATGATCAATCCTTTGGTTTAG
Protein sequenceShow/hide protein sequence
MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYPASCEIMNDLEKKVVAEEEEDEQVLLLDSSCDDDFFS
SYESLEDILRRDMMENLGAISTSMINPLV