CuGenDBv2

Gene ID	HG10019870
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Non-reducing end alpha-L-arabinofuranosidase
Genome location	Chr04:26391102..26392231
RNA-Seq Expression	HG10019870
Synteny	HG10019870
Gene Ontology terms	GO:0046373 - L-arabinose metabolic process (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0046556 - alpha-L-arabinofuranosidase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0053917.1 alpha-L-arabinofuranosidase 1-like isoform X2 [Cucumis melo var. makuwa]

1.8e-34

98.73

Show/hide

Query:  MGSRKVSYYVLLLCFGIVVVSVSTFFAIGDDTVQPVRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG
        MGSRKVSYYVLLLCFGIVVVSVSTFFAIGDDTVQPVRL VNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG
Subjt:  MGSRKVSYYVLLLCFGIVVVSVSTFFAIGDDTVQPVRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG

XP_022934081.1 alpha-L-arabinofuranosidase 1-like isoform X1 [Cucurbita moschata]

1.5e-33

96.2

Show/hide

Query:  MGSRKVSYYVLLLCFGIVVVSVSTFFAIGDDTVQPVRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG
        MGSRKVSYYVLLLCFGIVVVSV TFFAIGDDT QPVRLVVNAS+ASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG
Subjt:  MGSRKVSYYVLLLCFGIVVVSVSTFFAIGDDTVQPVRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG

XP_023527313.1 alpha-L-arabinofuranosidase 1-like isoform X1 [Cucurbita pepo subsp. pepo]

1.5e-33

96.2

Show/hide

Query:  MGSRKVSYYVLLLCFGIVVVSVSTFFAIGDDTVQPVRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG
        MGSRKVSYYVLLLCFGIVVVSV TFFAIGDDT QPVRLVVNAS+ASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG
Subjt:  MGSRKVSYYVLLLCFGIVVVSVSTFFAIGDDTVQPVRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG

XP_023527314.1 alpha-L-arabinofuranosidase 1-like isoform X2 [Cucurbita pepo subsp. pepo]

1.5e-33

96.2

Show/hide

Query:  MGSRKVSYYVLLLCFGIVVVSVSTFFAIGDDTVQPVRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG
        MGSRKVSYYVLLLCFGIVVVSV TFFAIGDDT QPVRLVVNAS+ASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG
Subjt:  MGSRKVSYYVLLLCFGIVVVSVSTFFAIGDDTVQPVRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG

XP_038904676.1 alpha-L-arabinofuranosidase 1-like [Benincasa hispida]

5.3e-34

97.47

Show/hide

Query:  MGSRKVSYYVLLLCFGIVVVSVSTFFAIGDDTVQPVRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG
        M SRKVSYYVLLLCFGIVVVSVSTFFAIGDDTVQPVRL VNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG
Subjt:  MGSRKVSYYVLLLCFGIVVVSVSTFFAIGDDTVQPVRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG

TrEMBL top hits

e value

%identity

Alignment

A0A5D3DPL1 Non-reducing end alpha-L-arabinofuranosidase

8.8e-35

98.73

Show/hide

Query:  MGSRKVSYYVLLLCFGIVVVSVSTFFAIGDDTVQPVRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG
        MGSRKVSYYVLLLCFGIVVVSVSTFFAIGDDTVQPVRL VNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG
Subjt:  MGSRKVSYYVLLLCFGIVVVSVSTFFAIGDDTVQPVRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG

A0A6J1F0V3 Non-reducing end alpha-L-arabinofuranosidase

7.4e-34

96.2

Show/hide

Query:  MGSRKVSYYVLLLCFGIVVVSVSTFFAIGDDTVQPVRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG
        MGSRKVSYYVLLLCFGIVVVSV TFFAIGDDT QPVRLVVNAS+ASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG
Subjt:  MGSRKVSYYVLLLCFGIVVVSVSTFFAIGDDTVQPVRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG

A0A6J1F1K5 Non-reducing end alpha-L-arabinofuranosidase

7.4e-34

96.2

Show/hide

Query:  MGSRKVSYYVLLLCFGIVVVSVSTFFAIGDDTVQPVRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG
        MGSRKVSYYVLLLCFGIVVVSV TFFAIGDDT QPVRLVVNAS+ASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG
Subjt:  MGSRKVSYYVLLLCFGIVVVSVSTFFAIGDDTVQPVRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG

A0A6J1J058 Non-reducing end alpha-L-arabinofuranosidase

9.7e-34

94.94

Show/hide

Query:  MGSRKVSYYVLLLCFGIVVVSVSTFFAIGDDTVQPVRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG
        MGSRKVSYYVLLLCFGIVV+SV TFFAIGDDT QPVRLVVNAS+ASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG
Subjt:  MGSRKVSYYVLLLCFGIVVVSVSTFFAIGDDTVQPVRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG

A0A6J1J8A9 Non-reducing end alpha-L-arabinofuranosidase

9.7e-34

94.94

Show/hide

Query:  MGSRKVSYYVLLLCFGIVVVSVSTFFAIGDDTVQPVRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG
        MGSRKVSYYVLLLCFGIVV+SV TFFAIGDDT QPVRLVVNAS+ASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG
Subjt:  MGSRKVSYYVLLLCFGIVVVSVSTFFAIGDDTVQPVRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG

SwissProt top hits

e value

%identity

Alignment

Q8VZR2 Alpha-L-arabinofuranosidase 2

3.1e-13

79.55

Show/hide

Query:  VRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG
        V L V+AS+ + R IPETLFGIFFEEINHAGAGG+WAELVSNRG
Subjt:  VRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG

Q9SG80 Alpha-L-arabinofuranosidase 1

1.8e-13

Show/hide

Query:  DDTVQPVRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG
        +D    V L V+AS+   R IPETLFGIFFEEINHAGAGG+WAELVSNRG
Subjt:  DDTVQPVRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG

Arabidopsis top hits

e value

%identity

Alignment

AT3G10740.1 alpha-L-arabinofuranosidase 1

1.3e-14

Show/hide

Query:  DDTVQPVRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG
        +D    V L V+AS+   R IPETLFGIFFEEINHAGAGG+WAELVSNRG
Subjt:  DDTVQPVRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG

AT5G26120.1 alpha-L-arabinofuranosidase 2

2.2e-14

79.55

Show/hide

Query:  VRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG
        V L V+AS+ + R IPETLFGIFFEEINHAGAGG+WAELVSNRG
Subjt:  VRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGTTCTCGTAAAGTTTCATACTATGTTCTTCTGCTATGCTTCGGTATTGTGGTTGTTTCTGTTAGTACATTCTTTGCCATTGGAGATGATACCGTCCAGCCTGTTCG
GCTCGTTGTTAATGCTTCAGATGCATCAACACGGCAGATTCCTGAAACACTTTTTGGAATATTTTTTGAGGAGATTAATCATGCAGGGGCTGGTGGAATTTGGGCGGAGC
TTGTGAGCAACAGAGGTCAGATCTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGSRKVSYYVLLLCFGIVVVSVSTFFAIGDDTVQPVRLVVNASDASTRQIPETLFGIFFEEINHAGAGGIWAELVSNRGQI

HG10019870 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome