; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10019891 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019891
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionregulation of nuclear pre-mRNA domain-containing protein 1B-like
Genome locationChr04:26557454..26564151
RNA-Seq ExpressionHG10019891
SyntenyHG10019891
Gene Ontology termsGO:0031124 - mRNA 3'-end processing (biological process)
GO:0016591 - RNA polymerase II, holoenzyme (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
InterPro domainsIPR006569 - CID domain
IPR008942 - ENTH/VHS


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7027736.1 Regulation of nuclear pre-mRNA domain-containing protein 1B, partial [Cucurbita argyrosperma subsp. argyrosperma]6.9e-3895.24Show/hide
Query:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLV
        ALSRWCISHRKKAKQIVETWDKLFNSSQK+QRVSFLYLANDILQNSRRKGSEFVNEFWKVLP +LKYVYDHGDE GKKAVARLV
Subjt:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLV

XP_004136608.1 regulation of nuclear pre-mRNA domain-containing protein 1B [Cucumis sativus]3.6e-3994.19Show/hide
Query:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRL
        +LS+WCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDE GKKAVARLV +
Subjt:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRL

XP_008443180.1 PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucumis melo]3.6e-3994.19Show/hide
Query:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRL
        +LS+WCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDE GKKAVARLV +
Subjt:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRL

XP_022152017.1 regulation of nuclear pre-mRNA domain-containing protein 1B-like [Momordica charantia]6.2e-3996.43Show/hide
Query:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLV
        +LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGD+ GKKAVARLV
Subjt:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLV

XP_038904543.1 regulation of nuclear pre-mRNA domain-containing protein 1B-like [Benincasa hispida]1.6e-3995.35Show/hide
Query:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRL
        +LSRWCISHRKKAKQIVETWDK FNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLV +
Subjt:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRL

TrEMBL top hitse value%identityAlignment
A0A0A0LBI8 CID domain-containing protein2.4e-4495.74Show/hide
Query:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRLLFTCVEKK
        ALS+WCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDE GKKAVARLV LLFTC EKK
Subjt:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRLLFTCVEKK

A0A1S3B7H0 regulation of nuclear pre-mRNA domain-containing protein 1B-like1.8e-3994.19Show/hide
Query:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRL
        +LS+WCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDE GKKAVARLV +
Subjt:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRL

A0A6J1DF20 regulation of nuclear pre-mRNA domain-containing protein 1B-like3.0e-3996.43Show/hide
Query:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLV
        +LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGD+ GKKAVARLV
Subjt:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLV

A0A6J1I2G4 regulation of nuclear pre-mRNA domain-containing protein 1B-like3.3e-3895.24Show/hide
Query:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLV
        +LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLP +LKYVYDHGDE GKKAVARLV
Subjt:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLV

A0A6J1J690 regulation of nuclear pre-mRNA domain-containing protein 1A-like isoform X15.7e-3891.86Show/hide
Query:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRL
        +LSRWCISHRKKAKQIVETWDKLFNSSQ+EQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYD GDE GKKA ARLV +
Subjt:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRL

SwissProt top hitse value%identityAlignment
Q0P5J9 Regulation of nuclear pre-mRNA domain-containing protein 1A4.2e-1440.23Show/hide
Query:  RALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRL
        + LS W I HRK ++ IV  W++    ++  ++++FLYLAND++QNS+RKG EF  +F  V+  A K+V    DE  KK + R++ +
Subjt:  RALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRL

Q8VDS4 Regulation of nuclear pre-mRNA domain-containing protein 1A4.2e-1440.23Show/hide
Query:  RALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRL
        + LS W I HRK ++ IV  W++    ++  ++++FLYLAND++QNS+RKG EF  +F  V+  A K+V    DE  KK + R++ +
Subjt:  RALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRL

Q96P16 Regulation of nuclear pre-mRNA domain-containing protein 1A4.2e-1440.23Show/hide
Query:  RALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRL
        + LS W I HRK ++ IV  W++    ++  ++++FLYLAND++QNS+RKG EF  +F  V+  A K+V    DE  KK + R++ +
Subjt:  RALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRL

Q9CSU0 Regulation of nuclear pre-mRNA domain-containing protein 1B2.9e-1537.93Show/hide
Query:  TFTPFFLPSKVAALFESSYEISYGVGCGNRALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYD
        +F+   L  K++ L  S   +        + LS W I HRK A  IV  W +    ++  ++++FLYLAND++QNS+RKG EF  EF  VL  A  +V  
Subjt:  TFTPFFLPSKVAALFESSYEISYGVGCGNRALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYD

Query:  HGDEGGKKAVARLVRL
          DEG KK + RL+ +
Subjt:  HGDEGGKKAVARLVRL

Q9NQG5 Regulation of nuclear pre-mRNA domain-containing protein 1B2.9e-1537.93Show/hide
Query:  TFTPFFLPSKVAALFESSYEISYGVGCGNRALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYD
        +F+   L  K++ L  S   +        + LS W I HRK A  IV  W +    ++  ++++FLYLAND++QNS+RKG EF  EF  VL  A  +V  
Subjt:  TFTPFFLPSKVAALFESSYEISYGVGCGNRALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYD

Query:  HGDEGGKKAVARLVRL
          DEG KK + RL+ +
Subjt:  HGDEGGKKAVARLVRL

Arabidopsis top hitse value%identityAlignment
AT3G26990.1 ENTH/VHS family protein7.6e-2750.86Show/hide
Query:  TFTPFFLPSKVAALFESSYEISYGVGCGNRALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYD
        +F    L  K+A L  S   I          LS WCI H  KAK +VETW + F+ + +EQR+++LYLANDILQNSRRKGSEFV EFWKVLP AL+ + +
Subjt:  TFTPFFLPSKVAALFESSYEISYGVGCGNRALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYD

Query:  HGDEGGKKAVARLVRL
        +GD+ G+K+  RLV +
Subjt:  HGDEGGKKAVARLVRL

AT5G10060.1 ENTH/VHS family protein1.9e-2549.57Show/hide
Query:  FTPFFLPSKVAALFESSYEISYGVGCGNRALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDH
        F+   L  K+A L  S   I          LS WCI +R KA+ IV TW+K F+S++ +Q+V  LYLANDILQNS+R+G+EFV EFW VLP ALK +   
Subjt:  FTPFFLPSKVAALFESSYEISYGVGCGNRALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDH

Query:  GDEGGKKAVARLVRL
        GD+ GK AVAR++++
Subjt:  GDEGGKKAVARLVRL

AT5G65180.1 ENTH/VHS family protein1.9e-2559.77Show/hide
Query:  RALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRL
        + LS+WCI HR +A+ +V TW+K F+S+Q  Q+V  LYLANDILQNS+R+G+EFV EFWKVLPGALK +   GD+ GK  V+RLV +
Subjt:  RALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAAAGATAGACAAAAGTCTTCAATCTTGGCAAAACGACTTCTATCTAAGGGAGATAGGCTTACCTTTAAAATTGCCACCCAAACTAACCTTCCCGCCTACATTTAC
CCCCTTCTTTTTGCCTTCCAAAGTTGCTGCTCTCTTTGAAAGCTCTTACGAAATTTCCTACGGTGTGGGGTGTGGGAATAGGGCTTTATCAAGATGGTGCATTTCCCACC
GGAAAAAGGCCAAGCAGATTGTTGAAACATGGGATAAATTGTTCAACTCATCTCAGAAAGAGCAGCGTGTTTCATTTCTGTACTTGGCGAATGACATTTTGCAGAACAGC
AGGCGCAAGGGGAGTGAATTTGTGAATGAATTCTGGAAAGTTCTTCCTGGTGCTCTCAAGTATGTCTATGATCATGGCGATGAAGGTGGAAAGAAAGCAGTTGCCAGACT
TGTACGTCTTCTTTTTACTTGTGTAGAAAAAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTAAAGATAGACAAAAGTCTTCAATCTTGGCAAAACGACTTCTATCTAAGGGAGATAGGCTTACCTTTAAAATTGCCACCCAAACTAACCTTCCCGCCTACATTTAC
CCCCTTCTTTTTGCCTTCCAAAGTTGCTGCTCTCTTTGAAAGCTCTTACGAAATTTCCTACGGTGTGGGGTGTGGGAATAGGGCTTTATCAAGATGGTGCATTTCCCACC
GGAAAAAGGCCAAGCAGATTGTTGAAACATGGGATAAATTGTTCAACTCATCTCAGAAAGAGCAGCGTGTTTCATTTCTGTACTTGGCGAATGACATTTTGCAGAACAGC
AGGCGCAAGGGGAGTGAATTTGTGAATGAATTCTGGAAAGTTCTTCCTGGTGCTCTCAAGTATGTCTATGATCATGGCGATGAAGGTGGAAAGAAAGCAGTTGCCAGACT
TGTACGTCTTCTTTTTACTTGTGTAGAAAAAAAATGA
Protein sequenceShow/hide protein sequence
MVKIDKSLQSWQNDFYLREIGLPLKLPPKLTFPPTFTPFFLPSKVAALFESSYEISYGVGCGNRALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNS
RRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRLLFTCVEKK