CuGenDBv2

Gene ID	HG10019905
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	ribosome production factor 1-like
Genome location	Chr04:26682824..26687446
RNA-Seq Expression	HG10019905
Synteny	HG10019905
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0042134 - rRNA primary transcript binding (molecular function)
InterPro domains	IPR044281 - U3 snoRNP protein/Ribosome production factor 1

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008443155.1 PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo]

1.2e-30

38.96

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Query:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSP------------------------------------------------------
        MIKNKEKRAEVHANLK+QKKLEKRK+AKARDAAEKQALE GEE+ P                                                      
Subjt:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSP------------------------------------------------------

Query:  ---------------------------ASPILEYANAKDFTSLMVVHTSRRKLES-------------WKSNQSSARACIDQLHNRPWSWCWKIQ-----
                                      I+EYANAKDFTSLMVVHTSRRKL+              +K +    R  I   H  P     ++      
Subjt:  ---------------------------ASPILEYANAKDFTSLMVVHTSRRKLES-------------WKSNQSSARACIDQLHNRPWSWCWKIQ-----

Query:  --------------------------------------------FWKQGKKKEADLKKKSKDTKGEKVPQQKVVARLQECGPHFTMKSISLQRETFDSKA
                                                    F  +  KKEAD KKKSKDTKGEKVPQQKV+ARLQECGP FTMK ISLQ  TFDSK 
Subjt:  --------------------------------------------FWKQGKKKEADLKKKSKDTKGEKVPQQKVVARLQECGPHFTMKSISLQRETFDSKA

Query:  GEYEWVHK
        GEYEWVHK
Subjt:  GEYEWVHK

XP_008443158.1 PREDICTED: ribosome production factor 1 isoform X2 [Cucumis melo]

2.3e-34

43.48

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Query:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSP-------------------------------------------------ASPIL
        MIKNKEKRAEVHANLK+QKKLEKRK+AKARDAAEKQALE GEE+ P                                                    I+
Subjt:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSP-------------------------------------------------ASPIL

Query:  EYANAKDFTSLMVVHTSRRKLES-------------WKSNQSSARACIDQLHNRPWSWCWKIQ-------------------------------------
        EYANAKDFTSLMVVHTSRRKL+              +K +    R  I   H  P     ++                                      
Subjt:  EYANAKDFTSLMVVHTSRRKLES-------------WKSNQSSARACIDQLHNRPWSWCWKIQ-------------------------------------

Query:  ------------FWKQGKKKEADLKKKSKDTKGEKVPQQKVVARLQECGPHFTMKSISLQRETFDSKAGEYEWVHK
                    F  +  KKEAD KKKSKDTKGEKVPQQKV+ARLQECGP FTMK ISLQ  TFDSK GEYEWVHK
Subjt:  ------------FWKQGKKKEADLKKKSKDTKGEKVPQQKVVARLQECGPHFTMKSISLQRETFDSKAGEYEWVHK

XP_022155906.1 ribosome production factor 1-like [Momordica charantia]

9.4e-28

37.66

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Query:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSP------------------------------------------------------
        MIKNKEKR EVHANLK QKKLEKRK+AKARDA+EKQALE GEE  P                                                      
Subjt:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSP------------------------------------------------------

Query:  ---------------------------ASPILEYANAKDFTSLMVVHTSRRKLES-------------WKSNQSSARACIDQLHNRPWSW----------
                                      I+EYANAKDFTSLMVVHTSRRKL+              +K +    R  I   H  P S           
Subjt:  ---------------------------ASPILEYANAKDFTSLMVVHTSRRKLES-------------WKSNQSSARACIDQLHNRPWSW----------

Query:  ---------------------------------------CWKIQFWKQGKKKEADLKKKSKDTKGEKVPQQKVVARLQECGPHFTMKSISLQRETFDSKA
                                                 +  F  +  KKEAD K  SKD KGEKVPQQKV+ARLQECGP FTMK ISLQ  TFDSK 
Subjt:  ---------------------------------------CWKIQFWKQGKKKEADLKKKSKDTKGEKVPQQKVVARLQECGPHFTMKSISLQRETFDSKA

Query:  GEYEWVHK
        GEYEWVHK
Subjt:  GEYEWVHK

XP_031737500.1 ribosome production factor 1 [Cucumis sativus]

5.0e-29

38.44

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Query:  IKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSP-------------------------------------------------------
        IKNKEKRAEVHANLK+QKKLEKRK+AKARDAAEKQALE GEE+ P                                                       
Subjt:  IKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSP-------------------------------------------------------

Query:  --------------------------ASPILEYANAKDFTSLMVVHTSRRKLES-------------WKSNQSSARACIDQLHNRPWSWCWKIQ------
                                     I+EYANAKDFTSLMVVHTSRRKL+              +K +    R  I   H  P     ++       
Subjt:  --------------------------ASPILEYANAKDFTSLMVVHTSRRKLES-------------WKSNQSSARACIDQLHNRPWSWCWKIQ------

Query:  -------------------------------------------FWKQGKKKEADLKKKSKDTKGEKVPQQKVVARLQECGPHFTMKSISLQRETFDSKAG
                                                   F  +  KKEAD KKKSK TKGEKVPQQKV+ARLQECGP FTMK ISLQ  TFDSK G
Subjt:  -------------------------------------------FWKQGKKKEADLKKKSKDTKGEKVPQQKVVARLQECGPHFTMKSISLQRETFDSKAG

Query:  EYEWVHK
        EYEWVHK
Subjt:  EYEWVHK

XP_038906205.1 ribosome production factor 1 [Benincasa hispida]

1.1e-31

39.61

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Query:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSP------------------------------------------------------
        MIKNKEKRAEVHANLKNQKKLEKRK+AKARDAAEKQALE GEE+ P                                                      
Subjt:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSP------------------------------------------------------

Query:  ---------------------------ASPILEYANAKDFTSLMVVHTSRRKLES-------------WKSNQSSARACIDQLHNRPWSWCWKIQ-----
                                      I+EYANAKDFTSLMVVHTSRRKL+              +K +    R  I   H  P S   ++      
Subjt:  ---------------------------ASPILEYANAKDFTSLMVVHTSRRKLES-------------WKSNQSSARACIDQLHNRPWSWCWKIQ-----

Query:  --------------------------------------------FWKQGKKKEADLKKKSKDTKGEKVPQQKVVARLQECGPHFTMKSISLQRETFDSKA
                                                    F  +  KKEAD KKKSKDTKGEKVPQQKV+ARLQECGP FTMK ISLQ  TFDSK 
Subjt:  --------------------------------------------FWKQGKKKEADLKKKSKDTKGEKVPQQKVVARLQECGPHFTMKSISLQRETFDSKA

Query:  GEYEWVHK
        GEYEWVHK
Subjt:  GEYEWVHK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LH42 Brix domain-containing protein

2.4e-29

38.44

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Query:  IKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSP-------------------------------------------------------
        IKNKEKRAEVHANLK+QKKLEKRK+AKARDAAEKQALE GEE+ P                                                       
Subjt:  IKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSP-------------------------------------------------------

Query:  --------------------------ASPILEYANAKDFTSLMVVHTSRRKLES-------------WKSNQSSARACIDQLHNRPWSWCWKIQ------
                                     I+EYANAKDFTSLMVVHTSRRKL+              +K +    R  I   H  P     ++       
Subjt:  --------------------------ASPILEYANAKDFTSLMVVHTSRRKLES-------------WKSNQSSARACIDQLHNRPWSWCWKIQ------

Query:  -------------------------------------------FWKQGKKKEADLKKKSKDTKGEKVPQQKVVARLQECGPHFTMKSISLQRETFDSKAG
                                                   F  +  KKEAD KKKSK TKGEKVPQQKV+ARLQECGP FTMK ISLQ  TFDSK G
Subjt:  -------------------------------------------FWKQGKKKEADLKKKSKDTKGEKVPQQKVVARLQECGPHFTMKSISLQRETFDSKAG

Query:  EYEWVHK
        EYEWVHK
Subjt:  EYEWVHK

A0A1S3B7C9 ribosome production factor 1 isoform X2

1.1e-34

43.48

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Query:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSP-------------------------------------------------ASPIL
        MIKNKEKRAEVHANLK+QKKLEKRK+AKARDAAEKQALE GEE+ P                                                    I+
Subjt:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSP-------------------------------------------------ASPIL

Query:  EYANAKDFTSLMVVHTSRRKLES-------------WKSNQSSARACIDQLHNRPWSWCWKIQ-------------------------------------
        EYANAKDFTSLMVVHTSRRKL+              +K +    R  I   H  P     ++                                      
Subjt:  EYANAKDFTSLMVVHTSRRKLES-------------WKSNQSSARACIDQLHNRPWSWCWKIQ-------------------------------------

Query:  ------------FWKQGKKKEADLKKKSKDTKGEKVPQQKVVARLQECGPHFTMKSISLQRETFDSKAGEYEWVHK
                    F  +  KKEAD KKKSKDTKGEKVPQQKV+ARLQECGP FTMK ISLQ  TFDSK GEYEWVHK
Subjt:  ------------FWKQGKKKEADLKKKSKDTKGEKVPQQKVVARLQECGPHFTMKSISLQRETFDSKAGEYEWVHK

A0A1S3B854 ribosome production factor 1 isoform X1

5.7e-31

38.96

Show/hide

Query:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSP------------------------------------------------------
        MIKNKEKRAEVHANLK+QKKLEKRK+AKARDAAEKQALE GEE+ P                                                      
Subjt:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSP------------------------------------------------------

Query:  ---------------------------ASPILEYANAKDFTSLMVVHTSRRKLES-------------WKSNQSSARACIDQLHNRPWSWCWKIQ-----
                                      I+EYANAKDFTSLMVVHTSRRKL+              +K +    R  I   H  P     ++      
Subjt:  ---------------------------ASPILEYANAKDFTSLMVVHTSRRKLES-------------WKSNQSSARACIDQLHNRPWSWCWKIQ-----

Query:  --------------------------------------------FWKQGKKKEADLKKKSKDTKGEKVPQQKVVARLQECGPHFTMKSISLQRETFDSKA
                                                    F  +  KKEAD KKKSKDTKGEKVPQQKV+ARLQECGP FTMK ISLQ  TFDSK 
Subjt:  --------------------------------------------FWKQGKKKEADLKKKSKDTKGEKVPQQKVVARLQECGPHFTMKSISLQRETFDSKA

Query:  GEYEWVHK
        GEYEWVHK
Subjt:  GEYEWVHK

A0A5A7UHC7 Ribosome production factor 1 isoform X1

5.7e-31

38.96

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Query:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSP------------------------------------------------------
        MIKNKEKRAEVHANLK+QKKLEKRK+AKARDAAEKQALE GEE+ P                                                      
Subjt:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSP------------------------------------------------------

Query:  ---------------------------ASPILEYANAKDFTSLMVVHTSRRKLES-------------WKSNQSSARACIDQLHNRPWSWCWKIQ-----
                                      I+EYANAKDFTSLMVVHTSRRKL+              +K +    R  I   H  P     ++      
Subjt:  ---------------------------ASPILEYANAKDFTSLMVVHTSRRKLES-------------WKSNQSSARACIDQLHNRPWSWCWKIQ-----

Query:  --------------------------------------------FWKQGKKKEADLKKKSKDTKGEKVPQQKVVARLQECGPHFTMKSISLQRETFDSKA
                                                    F  +  KKEAD KKKSKDTKGEKVPQQKV+ARLQECGP FTMK ISLQ  TFDSK 
Subjt:  --------------------------------------------FWKQGKKKEADLKKKSKDTKGEKVPQQKVVARLQECGPHFTMKSISLQRETFDSKA

Query:  GEYEWVHK
        GEYEWVHK
Subjt:  GEYEWVHK

A0A6J1DT48 ribosome production factor 1-like

4.5e-28

37.66

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Query:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSP------------------------------------------------------
        MIKNKEKR EVHANLK QKKLEKRK+AKARDA+EKQALE GEE  P                                                      
Subjt:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSP------------------------------------------------------

Query:  ---------------------------ASPILEYANAKDFTSLMVVHTSRRKLES-------------WKSNQSSARACIDQLHNRPWSW----------
                                      I+EYANAKDFTSLMVVHTSRRKL+              +K +    R  I   H  P S           
Subjt:  ---------------------------ASPILEYANAKDFTSLMVVHTSRRKLES-------------WKSNQSSARACIDQLHNRPWSW----------

Query:  ---------------------------------------CWKIQFWKQGKKKEADLKKKSKDTKGEKVPQQKVVARLQECGPHFTMKSISLQRETFDSKA
                                                 +  F  +  KKEAD K  SKD KGEKVPQQKV+ARLQECGP FTMK ISLQ  TFDSK 
Subjt:  ---------------------------------------CWKIQFWKQGKKKEADLKKKSKDTKGEKVPQQKVVARLQECGPHFTMKSISLQRETFDSKA

Query:  GEYEWVHK
        GEYEWVHK
Subjt:  GEYEWVHK

SwissProt top hits

e value

%identity

Alignment

Q5R631 Ribosome production factor 1

1.6e-06

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Query:  LQECGPHFTMKSISLQRETFDSKAGEYEWVHKELCLHLTTSSGKF
        +QE GP FT+K  SLQ+ TFDSK GEYEWVHK     + TS  KF
Subjt:  LQECGPHFTMKSISLQRETFDSKAGEYEWVHKELCLHLTTSSGKF

Q6IQU6 Ribosome production factor 1

3.6e-06

71.88

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Query:  LQECGPHFTMKSISLQRETFDSKAGEYEWVHK
        +QE GP FT+K  SLQ+ TFDSK GEYEWVHK
Subjt:  LQECGPHFTMKSISLQRETFDSKAGEYEWVHK

Q7TND5 Ribosome production factor 1

1.6e-06

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Query:  LQECGPHFTMKSISLQRETFDSKAGEYEWVHKELCLHLTTSSGKF
        +QE GP FT+K  SLQ+ TFDSK GEYEWVHK     + TS  KF
Subjt:  LQECGPHFTMKSISLQRETFDSKAGEYEWVHKELCLHLTTSSGKF

Q8AVP1 Ribosome production factor 1

1.6e-06

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Query:  LQECGPHFTMKSISLQRETFDSKAGEYEWVHKELCLHLTTSSGKF
        +QE GP FT+K  SLQ+ TFDSK GEYEWVHK     + TS  KF
Subjt:  LQECGPHFTMKSISLQRETFDSKAGEYEWVHKELCLHLTTSSGKF

Q9H9Y2 Ribosome production factor 1

1.6e-06

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Query:  LQECGPHFTMKSISLQRETFDSKAGEYEWVHKELCLHLTTSSGKF
        +QE GP FT+K  SLQ+ TFDSK GEYEWVHK     + TS  KF
Subjt:  LQECGPHFTMKSISLQRETFDSKAGEYEWVHKELCLHLTTSSGKF

Arabidopsis top hits

e value

%identity

Alignment

AT4G01560.1 Ribosomal RNA processing Brix domain protein

3.7e-14

27.89

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Query:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEE---------------------------------------------------------
        MIKNK+KR++V+A  K++KKLEK+KK +ARDAAEK+ALE GEE                                                         
Subjt:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEE---------------------------------------------------------

Query:  -------------VSPAS-----------PILEYANAKDFTSLMVVHTSRRKLES----WKSNQSSARACIDQL--------HNRPWSWCWKI-------
                     V P S            I+EYA  KDFTSL+VVHT+RR+ ++       N  +A   +  L        H  P S   ++       
Subjt:  -------------VSPAS-----------PILEYANAKDFTSLMVVHTSRRKLES----WKSNQSSARACIDQL--------HNRPWSWCWKI-------

Query:  -------QFWKQGKKKEADLKKK----------------------SKDTKGEKVPQQKVVARLQECGPHFTMKSISLQRETFDSKAGEYEWVHK
               +F++     + + + +                      +K++K +K  ++ +  RLQECGP FT+K ++LQ  TFD+K GE+EWVHK
Subjt:  -------QFWKQGKKKEADLKKK----------------------SKDTKGEKVPQQKVVARLQECGPHFTMKSISLQRETFDSKAGEYEWVHK

Sequences

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CDS sequence

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ATGATAAAGAATAAAGAAAAGAGGGCAGAAGTGCATGCCAACCTCAAGAACCAGAAGAAGCTTGAGAAACGAAAGAAGGCCAAGGCTCGTGATGCTGCTGAGAAGCAAGC
TCTTGAACATGGAGAAGAAGTATCTCCAGCATCTCCGATTTTAGAATATGCAAATGCCAAGGACTTCACTTCTTTGATGGTTGTCCATACGAGTAGGAGAAAATTGGAAT
CATGGAAATCCAACCAGTCATCAGCCAGAGCTTGTATTGACCAACTTCACAACAGGCCTTGGTCTTGGTGTTGGAAGATACAATTTTGGAAGCAAGGAAAAAAAAAAGAG
GCTGACTTAAAAAAGAAGTCCAAGGATACCAAGGGTGAGAAAGTTCCTCAGCAGAAAGTAGTTGCCCGACTTCAGGAATGTGGTCCTCATTTCACAATGAAATCGATCAG
TTTGCAGCGCGAAACCTTCGATTCAAAAGCTGGGGAATATGAATGGGTTCATAAGGAATTATGTCTGCATTTGACTACAAGTTCTGGGAAGTTTGATTTTGTGGGGGCAA
AGACAAACAGAGTTGATGAATTATTTGCTTGGGCAAAAGAAAAGCAGTTGGCCGCTGAGATTTTCGCATATGATTCCAAGCCCAACGGTGAACGCAAAATCGGTAAAATC
CAAATTCACAGTTACACACCAAGAAATTAA

mRNA sequence

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Protein sequence

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MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSPASPILEYANAKDFTSLMVVHTSRRKLESWKSNQSSARACIDQLHNRPWSWCWKIQFWKQGKKKE
ADLKKKSKDTKGEKVPQQKVVARLQECGPHFTMKSISLQRETFDSKAGEYEWVHKELCLHLTTSSGKFDFVGAKTNRVDELFAWAKEKQLAAEIFAYDSKPNGERKIGKI
QIHSYTPRN

HG10019905 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome