; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10019936 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10019936
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionArabinogalactan peptide 23
Genome locationChr04:27101597..27101770
RNA-Seq ExpressionHG10019936
SyntenyHG10019936
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043704.1 Arabinogalactan peptide 23 [Cucumis melo var. makuwa]1.1e-0978.69Show/hide
Query:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL
        MDMKK+TCAVLVAAAAVSATMA+ EGPA AP  SSD A AALP VGAFIGA    FFAYYL
Subjt:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL
KAG6596222.1 putative pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.3e-0768.85Show/hide
Query:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL
        M + KLTCA+L AAA V+A +AS E PA APGPSSDAAAAA+P VGAFIGA     FAYYL
Subjt:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL
KAG7027762.1 hypothetical protein SDJN02_08939, partial [Cucurbita argyrosperma subsp. argyrosperma]7.0e-0972.13Show/hide
Query:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL
        M MKK+TCA+L AAA VSA +AS E PA APGPSSDAAAAA+P VGAFIGA     FAYYL
Subjt:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL
XP_022746067.1 arabinogalactan peptide 23-like [Durio zibethinus]3.0e-0760.66Show/hide
Query:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL
        MDMKK++CAV+VAAA++SA MAS + PA+APGP+S AA+A LP +G+ +GA    FFAY+L
Subjt:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL
XP_038906349.1 arabinogalactan protein 23 [Benincasa hispida]1.8e-1281.97Show/hide
Query:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL
        MDMKK+TCAVLV+AA +SATMASGEGPA APG SSDAAAAALP VGAFIGA    FFAYYL
Subjt:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL
TrEMBL top hitse value%identityAlignment
A0A1R3GYJ0 Arabinogalactan peptide 23-like protein3.2e-0760.66Show/hide
Query:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL
        MDMKK++CAV+VAAA++SA +A+G+ PA+APGP+SD AA+ALP +G+ +GA    F AYYL
Subjt:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL
A0A1R3HIL4 Arabinogalactan peptide 23-like protein3.2e-0757.38Show/hide
Query:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL
        MDMKK++CAV+VAAA++SA +A+G+ PA+APGP++  AA+ALP +G+ +GA    F AYYL
Subjt:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL
A0A5D3DQ83 Arabinogalactan peptide 235.3e-1078.69Show/hide
Query:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL
        MDMKK+TCAVLVAAAAVSATMA+ EGPA AP  SSD A AALP VGAFIGA    FFAYYL
Subjt:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL
A0A6P5Z0H7 arabinogalactan peptide 23-like1.4e-0760.66Show/hide
Query:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL
        MDMKK++CAV+VAAA++SA MAS + PA+APGP+S AA+A LP +G+ +GA    FFAY+L
Subjt:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL
A0A6P6APJ2 arabinogalactan peptide 23-like3.2e-0759.02Show/hide
Query:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL
        MDMKK++CAV+V AA++SA MAS + PA+APGP+S AA++ LP +G+ +GA    FFAYYL
Subjt:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 232.9e-0554.1Show/hide
Query:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL
        M+MKK+ C VL AAA+++A MA+ E  A APGP+S AA+AALP +G+ +GA     F+YYL
Subjt:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL
Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)2.3e-0547.54Show/hide
Query:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL
        M+MKK+ C V+ AAA+++A MA+  G A APGP++  A+ A+P +G+ +GA     FAYYL
Subjt:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL
AT3G57690.1 arabinogalactan protein 232.0e-0654.1Show/hide
Query:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL
        M+MKK+ C VL AAA+++A MA+ E  A APGP+S AA+AALP +G+ +GA     F+YYL
Subjt:  MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGA----FFAYYL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACATGAAGAAGTTGACCTGCGCCGTCCTCGTCGCTGCTGCCGCCGTGAGTGCTACTATGGCCTCTGGTGAAGGCCCGGCTTCGGCACCCGGCCCATCCTCCGACGC
GGCTGCTGCTGCTTTGCCAACTGTTGGAGCCTTCATTGGTGCTTTCTTTGCCTACTACTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACATGAAGAAGTTGACCTGCGCCGTCCTCGTCGCTGCTGCCGCCGTGAGTGCTACTATGGCCTCTGGTGAAGGCCCGGCTTCGGCACCCGGCCCATCCTCCGACGC
GGCTGCTGCTGCTTTGCCAACTGTTGGAGCCTTCATTGGTGCTTTCTTTGCCTACTACTTGTAA
Protein sequenceShow/hide protein sequence
MDMKKLTCAVLVAAAAVSATMASGEGPASAPGPSSDAAAAALPTVGAFIGAFFAYYL