CuGenDBv2

Gene ID	HG10019955
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	squamosa promoter-binding-like protein 9
Genome location	Chr04:27284443..27285081
RNA-Seq Expression	HG10019955
Synteny	HG10019955
Gene Ontology terms	GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR044817 - Squamosa promoter-binding-like protein

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0043720.1 squamosa promoter-binding-like protein 9 isoform X1 [Cucumis melo var. makuwa]

7.4e-96

86.85

Show/hide

Query:  MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGPGNPSGG-CINGVTDSSCALS
        + ENS+RVGSFLMDFSAYPKL GKDVW SGTKASERV GN+SI S+GKYVPHPWQSNSENN  ELLLPV SAGGTSFSGPGNPSGG CIN VTDSSCALS
Subjt:  MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGPGNPSGG-CINGVTDSSCALS

Query:  LLSNQTWGSRNRTTAVEVNALLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSFSGDVQFPHQVRRSYMELGHS
        LLSN++WGSRNRTT VEVNALLNAEG LVAQT T HAATNHFPTMSWGFKGNE P SS LDLTSDLGLNHQVS ALTSSFSGDVQFPH  RR YMELGHS
Subjt:  LLSNQTWGSRNRTTAVEVNALLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSFSGDVQFPHQVRRSYMELGHS

Query:  GTFDSTQHLHWSL
        G FDSTQHLHWSL
Subjt:  GTFDSTQHLHWSL

XP_004136576.1 squamosa promoter-binding-like protein 9 [Cucumis sativus]

2.6e-96

86.38

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Query:  MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGPGNPSGG-CINGVTDSSCALS
        + ENS+RVGSFLMDFSAYPKL GKDVWS+GTKASERVPGN ++SSMGKYVPHPWQSNSENN  ELLLPV SAGGTSFSGPGNPSGG CIN VTDSSCALS
Subjt:  MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGPGNPSGG-CINGVTDSSCALS

Query:  LLSNQTWGSRNRTTAVEVNALLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSFSGDVQFPHQVRRSYMELGHS
        LLSN++WGSRNRTT +EVNALLNAEG LVAQT TA AATNHFPTMSWGFKGNE P SS  DLTSDLGLNHQVS ALTSSFSGDVQFPH  RR YMELGHS
Subjt:  LLSNQTWGSRNRTTAVEVNALLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSFSGDVQFPHQVRRSYMELGHS

Query:  GTFDSTQHLHWSL
        G FDSTQHLHWSL
Subjt:  GTFDSTQHLHWSL

XP_008443072.1 PREDICTED: squamosa promoter-binding-like protein 9 isoform X1 [Cucumis melo]

7.4e-96

86.85

Show/hide

Query:  MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGPGNPSGG-CINGVTDSSCALS
        + ENS+RVGSFLMDFSAYPKL GKDVW SGTKASERV GN+SI S+GKYVPHPWQSNSENN  ELLLPV SAGGTSFSGPGNPSGG CIN VTDSSCALS
Subjt:  MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGPGNPSGG-CINGVTDSSCALS

Query:  LLSNQTWGSRNRTTAVEVNALLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSFSGDVQFPHQVRRSYMELGHS
        LLSN++WGSRNRTT VEVNALLNAEG LVAQT T HAATNHFPTMSWGFKGNE P SS LDLTSDLGLNHQVS ALTSSFSGDVQFPH  RR YMELGHS
Subjt:  LLSNQTWGSRNRTTAVEVNALLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSFSGDVQFPHQVRRSYMELGHS

Query:  GTFDSTQHLHWSL
        G FDSTQHLHWSL
Subjt:  GTFDSTQHLHWSL

XP_016899769.1 PREDICTED: squamosa promoter-binding-like protein 9 isoform X2 [Cucumis melo]

7.4e-96

86.85

Show/hide

Query:  MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGPGNPSGG-CINGVTDSSCALS
        + ENS+RVGSFLMDFSAYPKL GKDVW SGTKASERV GN+SI S+GKYVPHPWQSNSENN  ELLLPV SAGGTSFSGPGNPSGG CIN VTDSSCALS
Subjt:  MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGPGNPSGG-CINGVTDSSCALS

Query:  LLSNQTWGSRNRTTAVEVNALLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSFSGDVQFPHQVRRSYMELGHS
        LLSN++WGSRNRTT VEVNALLNAEG LVAQT T HAATNHFPTMSWGFKGNE P SS LDLTSDLGLNHQVS ALTSSFSGDVQFPH  RR YMELGHS
Subjt:  LLSNQTWGSRNRTTAVEVNALLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSFSGDVQFPHQVRRSYMELGHS

Query:  GTFDSTQHLHWSL
        G FDSTQHLHWSL
Subjt:  GTFDSTQHLHWSL

XP_038905618.1 squamosa promoter-binding-like protein 17 [Benincasa hispida]

1.4e-99

89.15

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Query:  MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGPGNPSGGCINGVTDSSCALSL
        + EN++RVGSFLMDFSAYPKLTGKDVWSSGTK SERVPGNQS++SMGKY+PHPWQSNS+NNPSELLLPV SAGGTS SGPGNPSG CINGVTDSSCALSL
Subjt:  MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGPGNPSGGCINGVTDSSCALSL

Query:  LSNQTWGSRNRTTAVEVNALLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSFSGDVQFPHQVRRSYMELGHSG
        LSNQTWGSRNRTTAVEVNALLNAEGALVAQT TAH A NHFPTMSWGFKGNE PASSSLDLTSDLGLN Q+SQ LT SFSGDVQFPHQ RR YMELGHSG
Subjt:  LSNQTWGSRNRTTAVEVNALLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSFSGDVQFPHQVRRSYMELGHSG

Query:  TFDSTQHLHWSL
         FDSTQHLHWSL
Subjt:  TFDSTQHLHWSL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LBC1 SBP-type domain-containing protein

1.2e-96

86.38

Show/hide

Query:  MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGPGNPSGG-CINGVTDSSCALS
        + ENS+RVGSFLMDFSAYPKL GKDVWS+GTKASERVPGN ++SSMGKYVPHPWQSNSENN  ELLLPV SAGGTSFSGPGNPSGG CIN VTDSSCALS
Subjt:  MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGPGNPSGG-CINGVTDSSCALS

Query:  LLSNQTWGSRNRTTAVEVNALLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSFSGDVQFPHQVRRSYMELGHS
        LLSN++WGSRNRTT +EVNALLNAEG LVAQT TA AATNHFPTMSWGFKGNE P SS  DLTSDLGLNHQVS ALTSSFSGDVQFPH  RR YMELGHS
Subjt:  LLSNQTWGSRNRTTAVEVNALLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSFSGDVQFPHQVRRSYMELGHS

Query:  GTFDSTQHLHWSL
        G FDSTQHLHWSL
Subjt:  GTFDSTQHLHWSL

A0A1S3B7Z5 squamosa promoter-binding-like protein 9 isoform X1

3.6e-96

86.85

Show/hide

Query:  MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGPGNPSGG-CINGVTDSSCALS
        + ENS+RVGSFLMDFSAYPKL GKDVW SGTKASERV GN+SI S+GKYVPHPWQSNSENN  ELLLPV SAGGTSFSGPGNPSGG CIN VTDSSCALS
Subjt:  MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGPGNPSGG-CINGVTDSSCALS

Query:  LLSNQTWGSRNRTTAVEVNALLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSFSGDVQFPHQVRRSYMELGHS
        LLSN++WGSRNRTT VEVNALLNAEG LVAQT T HAATNHFPTMSWGFKGNE P SS LDLTSDLGLNHQVS ALTSSFSGDVQFPH  RR YMELGHS
Subjt:  LLSNQTWGSRNRTTAVEVNALLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSFSGDVQFPHQVRRSYMELGHS

Query:  GTFDSTQHLHWSL
        G FDSTQHLHWSL
Subjt:  GTFDSTQHLHWSL

A0A1S4DUW0 squamosa promoter-binding-like protein 9 isoform X2

3.6e-96

86.85

Show/hide

Query:  MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGPGNPSGG-CINGVTDSSCALS
        + ENS+RVGSFLMDFSAYPKL GKDVW SGTKASERV GN+SI S+GKYVPHPWQSNSENN  ELLLPV SAGGTSFSGPGNPSGG CIN VTDSSCALS
Subjt:  MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGPGNPSGG-CINGVTDSSCALS

Query:  LLSNQTWGSRNRTTAVEVNALLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSFSGDVQFPHQVRRSYMELGHS
        LLSN++WGSRNRTT VEVNALLNAEG LVAQT T HAATNHFPTMSWGFKGNE P SS LDLTSDLGLNHQVS ALTSSFSGDVQFPH  RR YMELGHS
Subjt:  LLSNQTWGSRNRTTAVEVNALLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSFSGDVQFPHQVRRSYMELGHS

Query:  GTFDSTQHLHWSL
        G FDSTQHLHWSL
Subjt:  GTFDSTQHLHWSL

A0A5D3DP42 Squamosa promoter-binding-like protein 9 isoform X1

3.6e-96

86.85

Show/hide

Query:  MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGPGNPSGG-CINGVTDSSCALS
        + ENS+RVGSFLMDFSAYPKL GKDVW SGTKASERV GN+SI S+GKYVPHPWQSNSENN  ELLLPV SAGGTSFSGPGNPSGG CIN VTDSSCALS
Subjt:  MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGPGNPSGG-CINGVTDSSCALS

Query:  LLSNQTWGSRNRTTAVEVNALLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSFSGDVQFPHQVRRSYMELGHS
        LLSN++WGSRNRTT VEVNALLNAEG LVAQT T HAATNHFPTMSWGFKGNE P SS LDLTSDLGLNHQVS ALTSSFSGDVQFPH  RR YMELGHS
Subjt:  LLSNQTWGSRNRTTAVEVNALLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSFSGDVQFPHQVRRSYMELGHS

Query:  GTFDSTQHLHWSL
        G FDSTQHLHWSL
Subjt:  GTFDSTQHLHWSL

A0A6J1F585 squamosa promoter-binding-like protein 17 isoform X1

1.3e-85

82.06

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Query:  MIENSSRVGSFLMDFSAYPKLTGKDVW-SSGTKA-SERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGPGNPSGGCINGVTDSSCAL
        + ENSSRVGSFLMDFSAYPKLTGKDVW SSG KA SERVPGNQ I+SMGKY+P+PWQS    NPSELLLPVSSAGGTS+SGPGNPSG CINGVTDSSCAL
Subjt:  MIENSSRVGSFLMDFSAYPKLTGKDVW-SSGTKA-SERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGPGNPSGGCINGVTDSSCAL

Query:  SLLSNQTWGSRNRTTAVEVN-ALLNAEGALVAQTPTAHAATNHFP----TMSWGFKGNETPASSSLDLTSDLGLNHQVSQAL-TSSFSGDVQFPHQ-VRR
        SLLSNQTWGSRNR+T +EVN ALLNAEGALVAQT +AHAATNHFP      SW FKGNE+PAS SLDL SDLGLNHQVSQAL TSSFSGDVQFP+Q  RR
Subjt:  SLLSNQTWGSRNRTTAVEVN-ALLNAEGALVAQTPTAHAATNHFP----TMSWGFKGNETPASSSLDLTSDLGLNHQVSQAL-TSSFSGDVQFPHQ-VRR

Query:  SYMELGHS-GTFDST-QHLHWSL
         YMELG S G FDST QHLHWSL
Subjt:  SYMELGHS-GTFDST-QHLHWSL

SwissProt top hits

e value

%identity

Alignment

A3C057 Squamosa promoter-binding-like protein 17

4.8e-05

37.7

Show/hide

Query:  ENSSRVGSFLMDFSAYPKLTG--KDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGP--GNP-----SGGCINGV-T
        E   R  SF++DFS YP++    +D W +  + S+R+ G  SI   G +  HP +S             SS GG++   P   +P     SGGC+ GV T
Subjt:  ENSSRVGSFLMDFSAYPKLTG--KDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGP--GNP-----SGGCINGV-T

Query:  DSSCALSLLSNQTWGSRNRTTA
        DSSCALSLLS Q W +   T++
Subjt:  DSSCALSLLSNQTWGSRNRTTA

Q7EXZ2 Squamosa promoter-binding-like protein 14

2.5e-06

28.45

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Query:  RVGSFLMDFS----------AYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGPGNPSGGCINGV---TD
        R  SF +DFS          A+P +   D  S G +    V  +   S++  Y  + +               SS+G   F+GP  P GGC+ GV   TD
Subjt:  RVGSFLMDFS----------AYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGPGNPSGGCINGV---TD

Query:  SSCALSLLSNQTWGSRNRTTAVEVN------ALLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASS-SLDLTSDLGLNH-QVSQALTSSFSGDVQF
        SSCALSLLS Q W +   + A   N         + +G  VA  P+A A +   P+   G +G+E    S +  L  ++ L+      +  + FSG+++ 
Subjt:  SSCALSLLSNQTWGSRNRTTAVEVN------ALLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASS-SLDLTSDLGLNH-QVSQALTSSFSGDVQF

Query:  PHQ----VRRSYMELGHSGTFDSTQH-LHWSL
          Q         ++ G   TFD T + + WSL
Subjt:  PHQ----VRRSYMELGHSGTFDSTQH-LHWSL

Arabidopsis top hits

e value

%identity

Alignment

AT2G42200.1 squamosa promoter binding protein-like 9

5.4e-04

29.48

Show/hide

Query:  WQSNSENNPSELLLPVSSAGGTSFSGPG--NPSGGCINGVTDSSCALSLLS----------NQTWGSRNRTTAVEVNALLNAEGALVAQTPTAHAATNHF
        WQ N  N  S+  +     GGTSFS P   +       G+ DS+CALSLLS          N    + N       ++        +AQ P A  + + +
Subjt:  WQSNSENNPSELLLPVSSAGGTSFSGPG--NPSGGCINGVTDSSCALSLLS----------NQTWGSRNRTTAVEVNALLNAEGALVAQTPTAHAATNHF

Query:  PTMSWGFKGNETPASSSLDLTSDLGL-NHQVSQALTSSFSGDVQFPHQVRRSYMELGHSGTFD-STQHLHWSL
            W FK N+   S  L+L       N Q+S              HQ RR YME  ++  +D S+ H +WSL
Subjt:  PTMSWGFKGNETPASSSLDLTSDLGL-NHQVSQALTSSFSGDVQFPHQVRRSYMELGHSGTFD-STQHLHWSL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATAGAAAACAGCAGCAGAGTCGGAAGCTTTCTAATGGATTTCAGTGCATATCCAAAGCTAACAGGAAAAGATGTCTGGTCGTCTGGTACAAAAGCATCTGAACGGGT
ACCCGGAAACCAAAGCATCAGTTCCATGGGAAAATACGTCCCACATCCCTGGCAGAGCAACTCTGAGAACAATCCATCTGAACTTCTCTTGCCAGTTTCTTCTGCAGGTG
GAACCAGTTTTTCTGGTCCTGGGAATCCTTCTGGAGGATGCATCAATGGAGTTACTGACTCATCCTGTGCTCTCTCTCTTCTGTCAAACCAAACATGGGGCTCCAGAAAC
CGAACAACGGCTGTCGAGGTAAATGCCTTGTTGAATGCTGAAGGTGCACTTGTGGCTCAAACACCAACAGCTCATGCTGCTACCAATCATTTTCCGACCATGTCGTGGGG
TTTCAAGGGGAATGAAACTCCTGCTAGCAGCTCCCTGGACCTGACATCTGATCTCGGTCTGAATCATCAAGTTTCACAGGCTCTTACCAGTTCTTTCTCTGGTGATGTCC
AGTTTCCTCATCAAGTTAGGAGGTCATACATGGAACTTGGACATTCGGGTACCTTTGACTCAACCCAGCATCTACACTGGTCACTTTGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGPGNPSGGCINGVTDSSCALSLLSNQTWGSRN
RTTAVEVNALLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSFSGDVQFPHQVRRSYMELGHSGTFDSTQHLHWSL

HG10019955 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome