; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10020012 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10020012
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionVQ domain-containing protein
Genome locationChr04:27929963..27930247
RNA-Seq ExpressionHG10020012
SyntenyHG10020012
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR008889 - VQ
IPR039607 - VQ motif-containing protein 8/17/18/20/21/25


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043778.1 protein MKS1-like [Cucumis melo var. makuwa]1.9e-2777.42Show/hide
Query:  MMNSTLARNQLQLRGARPPPLTVNKSSTKIFKKSTKNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVA-IAPSCSAT
        MMN T ARNQ QLRG RPPPLTVNKSST IFKKSTKN      N+RN  SP+I+YLRSPKIIHVRPEEFKSFVQRLTGN SSVA +A SCSA+
Subjt:  MMNSTLARNQLQLRGARPPPLTVNKSSTKIFKKSTKNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVA-IAPSCSAT

KAG6596645.1 VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]8.9e-2578.72Show/hide
Query:  MNSTLARNQ--LQLRGARPPPLTVNKSSTKIFKKSTKNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVA-IAPSCSAT
        MNS  ARNQ  L+LRG RPPPLTVNKSSTKIFKKST  N  P  NRR+   PVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVA +A S SAT
Subjt:  MNSTLARNQ--LQLRGARPPPLTVNKSSTKIFKKSTKNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVA-IAPSCSAT

KGN59247.1 hypothetical protein Csa_002000 [Cucumis sativus]3.8e-2875.53Show/hide
Query:  MMNSTLARNQLQLRGARPPPLTVNK-SSTKIFKKSTKNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVA-IAPSCSAT
        M+ S  ARN  QLRG RPPPLTVNK SST I KKSTKNNPLP +N+R+  SP+I+YLRSPK+IHVRPEEFKSFVQRLTGN SSVA +A SCSAT
Subjt:  MMNSTLARNQLQLRGARPPPLTVNK-SSTKIFKKSTKNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVA-IAPSCSAT

XP_008443599.1 PREDICTED: protein MKS1-like [Cucumis melo]5.5e-2777.17Show/hide
Query:  MNSTLARNQLQLRGARPPPLTVNKSSTKIFKKSTKNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVA-IAPSCSAT
        MN T ARNQ QLRG RPPPLTVNKSST IFKKSTKN      N+RN  SP+I+YLRSPKIIHVRPEEFKSFVQRLTGN SSVA +A SCSA+
Subjt:  MNSTLARNQLQLRGARPPPLTVNKSSTKIFKKSTKNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVA-IAPSCSAT

XP_041023984.1 protein MKS1-like [Juglans microcarpa x Juglans regia]1.0e-1257.89Show/hide
Query:  ARNQLQLRGARPPPLTVNKSSTKIFKKSTKNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSS
        ++ + QL+G+RP PLTV+KSSTKI K      P+P T      SPVIVYL+SPK+IHVRPEEF   VQRLTG  +S
Subjt:  ARNQLQLRGARPPPLTVNKSSTKIFKKSTKNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSS

TrEMBL top hitse value%identityAlignment
A0A0A0LEW5 VQ domain-containing protein1.9e-2875.53Show/hide
Query:  MMNSTLARNQLQLRGARPPPLTVNK-SSTKIFKKSTKNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVA-IAPSCSAT
        M+ S  ARN  QLRG RPPPLTVNK SST I KKSTKNNPLP +N+R+  SP+I+YLRSPK+IHVRPEEFKSFVQRLTGN SSVA +A SCSAT
Subjt:  MMNSTLARNQLQLRGARPPPLTVNK-SSTKIFKKSTKNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVA-IAPSCSAT

A0A1R3JJT0 VQ motif-containing protein8.4e-1353.57Show/hide
Query:  ARNQLQLRGARPPPLTVNKSSTKIFKKSTKNNPL--PFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAIAPS
        +R   +L+G RP PL V+ +S+KI KKS+  + L  P  NR     PV++YLRSPKIIHVRPEEF S VQRLTG  S+ A   S
Subjt:  ARNQLQLRGARPPPLTVNKSSTKIFKKSTKNNPL--PFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAIAPS

A0A1S3B975 protein MKS1-like2.7e-2777.17Show/hide
Query:  MNSTLARNQLQLRGARPPPLTVNKSSTKIFKKSTKNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVA-IAPSCSAT
        MN T ARNQ QLRG RPPPLTVNKSST IFKKSTKN      N+RN  SP+I+YLRSPKIIHVRPEEFKSFVQRLTGN SSVA +A SCSA+
Subjt:  MNSTLARNQLQLRGARPPPLTVNKSSTKIFKKSTKNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVA-IAPSCSAT

A0A2N9GB07 VQ domain-containing protein5.8e-1454.44Show/hide
Query:  MNSTLARNQLQLRGARPPPLTVNKSSTKIFKKSTKNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAIAPSCSA
        M+S   +  LQL+G RP PLTVNKSSTKI     K  PLP    R   SPVI+YL+SPK+IHVRPEEF   VQ+LTGN +   +A   S+
Subjt:  MNSTLARNQLQLRGARPPPLTVNKSSTKIFKKSTKNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAIAPSCSA

A0A5D3DP92 Protein MKS1-like9.2e-2877.42Show/hide
Query:  MMNSTLARNQLQLRGARPPPLTVNKSSTKIFKKSTKNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVA-IAPSCSAT
        MMN T ARNQ QLRG RPPPLTVNKSST IFKKSTKN      N+RN  SP+I+YLRSPKIIHVRPEEFKSFVQRLTGN SSVA +A SCSA+
Subjt:  MMNSTLARNQLQLRGARPPPLTVNKSSTKIFKKSTKNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVA-IAPSCSAT

SwissProt top hitse value%identityAlignment
F4HWF9 Nuclear speckle RNA-binding protein B4.7e-0534.83Show/hide
Query:  GARPPPLTVNKSSTKIFKKSTKNNPLPFTNRRNCH-----------SPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAIAPSCSAT
        G +P PL V   S KI KK     P P       H            PV +Y  +P+IIH  P  F + VQRLTG  S+   + S S++
Subjt:  GARPPPLTVNKSSTKIFKKSTKNNPLPFTNRRNCH-----------SPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAIAPSCSAT

Q8LGD5 Protein MKS12.7e-0843.21Show/hide
Query:  RNQLQLRGARPPPLTVNKSSTKIFKKSTKNNPLPFTNRRN-----CHSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSV
        + QLQ+ G RP PL+V+K S KI  K    +P P  NR          PV++Y  SPK++H    EF + VQRLTG  S V
Subjt:  RNQLQLRGARPPPLTVNKSSTKIFKKSTKNNPLPFTNRRN-----CHSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSV

Q9CA36 VQ motif-containing protein 8, chloroplastic5.6e-0644.12Show/hide
Query:  QLRGARPPPLTVNKSSTKIFKKST-KNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTG
        ++ G+RP  L +   S  I K S+ K+ P P        SPVI+Y  SPK+IH R E+F + VQRLTG
Subjt:  QLRGARPPPLTVNKSSTKIFKKST-KNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTG

Q9LS54 VQ motif-containing protein 201.2e-0542.62Show/hide
Query:  PPPLTVNKSSTKIFKKSTKNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTG
        PP L VNK S  I K     +P  F++      PVI+Y  +P+IIH  P++F + VQ+LTG
Subjt:  PPPLTVNKSSTKIFKKSTKNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTG

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding3.4e-0634.83Show/hide
Query:  GARPPPLTVNKSSTKIFKKSTKNNPLPFTNRRNCH-----------SPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAIAPSCSAT
        G +P PL V   S KI KK     P P       H            PV +Y  +P+IIH  P  F + VQRLTG  S+   + S S++
Subjt:  GARPPPLTVNKSSTKIFKKSTKNNPLPFTNRRNCH-----------SPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAIAPSCSAT

AT1G21326.1 VQ motif-containing protein2.3e-0738.2Show/hide
Query:  GARPPPLTVNKSSTKIFKKSTKNNPLPFTNRRNCH-----------SPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAIAPSCSAT
        G RP PL V   S KI KK     P P       H            PVI+Y  SP+IIH  P  F + VQRLTG  S+   + S S++
Subjt:  GARPPPLTVNKSSTKIFKKSTKNNPLPFTNRRNCH-----------SPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAIAPSCSAT

AT1G68450.1 VQ motif-containing protein4.0e-0744.12Show/hide
Query:  QLRGARPPPLTVNKSSTKIFKKST-KNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTG
        ++ G+RP  L +   S  I K S+ K+ P P        SPVI+Y  SPK+IH R E+F + VQRLTG
Subjt:  QLRGARPPPLTVNKSSTKIFKKST-KNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTG

AT3G18360.1 VQ motif-containing protein8.9e-0742.62Show/hide
Query:  PPPLTVNKSSTKIFKKSTKNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTG
        PP L VNK S  I K     +P  F++      PVI+Y  +P+IIH  P++F + VQ+LTG
Subjt:  PPPLTVNKSSTKIFKKSTKNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTG

AT3G18690.1 MAP kinase substrate 11.9e-0943.21Show/hide
Query:  RNQLQLRGARPPPLTVNKSSTKIFKKSTKNNPLPFTNRRN-----CHSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSV
        + QLQ+ G RP PL+V+K S KI  K    +P P  NR          PV++Y  SPK++H    EF + VQRLTG  S V
Subjt:  RNQLQLRGARPPPLTVNKSSTKIFKKSTKNNPLPFTNRRN-----CHSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAACTCCACCCTCGCGAGGAATCAATTGCAATTGCGAGGTGCGAGGCCGCCGCCATTGACGGTGAACAAATCCTCCACCAAGATTTTTAAGAAATCCACGAAGAA
TAATCCGCTACCGTTTACGAATCGACGCAATTGCCATTCTCCGGTAATCGTTTACCTCCGATCCCCAAAGATCATTCATGTCCGTCCTGAGGAATTCAAAAGCTTCGTTC
AACGCCTCACTGGAAACGGATCCTCTGTCGCCATCGCGCCGTCCTGTTCTGCTACTGAGCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGATGAACTCCACCCTCGCGAGGAATCAATTGCAATTGCGAGGTGCGAGGCCGCCGCCATTGACGGTGAACAAATCCTCCACCAAGATTTTTAAGAAATCCACGAAGAA
TAATCCGCTACCGTTTACGAATCGACGCAATTGCCATTCTCCGGTAATCGTTTACCTCCGATCCCCAAAGATCATTCATGTCCGTCCTGAGGAATTCAAAAGCTTCGTTC
AACGCCTCACTGGAAACGGATCCTCTGTCGCCATCGCGCCGTCCTGTTCTGCTACTGAGCTATGA
Protein sequenceShow/hide protein sequence
MMNSTLARNQLQLRGARPPPLTVNKSSTKIFKKSTKNNPLPFTNRRNCHSPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAIAPSCSATEL