CuGenDBv2

Gene ID	HG10020064
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA-directed DNA polymerase, family B, conserved site
Genome location	Chr04:28452746..28453297
RNA-Seq Expression	HG10020064
Synteny	HG10020064
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_011652029.2 uncharacterized protein LOC105434980 [Cucumis sativus]

1.1e-58

71.73

Show/hide

Query:  MDGGLNKIAT---VFIAAFLLSFLLLVAQILYILSRRRR--HLRVGEPNEKCIYLFCWRNQSRIEPKEIVSISKIDGDSEGAAVVVVETAAADDELEKWQ
        MDG LNKIAT   +FI  FLL FL L+AQILYIL RRRR   LR GEPN+K  +LF WRNQSRI+PKEI SISKID DSEGA   VVETA   DELEKWQ
Subjt:  MDGGLNKIAT---VFIAAFLLSFLLLVAQILYILSRRRR--HLRVGEPNEKCIYLFCWRNQSRIEPKEIVSISKIDGDSEGAAVVVVETAAADDELEKWQ

Query:  ELCGPSRTLFTINEEDEREGTIECLEY-DPIPKLKSD--EDTTPFHTPCASPPYFTPSSSPTRDARDFPADRGCSDENRTTPFSAIQITIH
        ELCGPSRTLFTI EE+EREG +EC EY +P  KLK+D  EDTTPFHTP ASPPYFTPSSSPT   RDFP  +GCS++N  TPFS IQIT H
Subjt:  ELCGPSRTLFTINEEDEREGTIECLEY-DPIPKLKSD--EDTTPFHTPCASPPYFTPSSSPTRDARDFPADRGCSDENRTTPFSAIQITIH

XP_016899627.1 PREDICTED: uncharacterized protein LOC103486669 [Cucumis melo]

1.8e-66

76.47

Show/hide

Query:  MDGGLNKIATVFIAAFLLSFLLLVAQILYILSRRRRHLRVG--EPNEKCIYLFCWRNQSRIEPKEIVSISKIDG-DSEGAAVVVVETAAADDELEKWQEL
        MDGGLNKIAT  I  FL  F  L+AQILYIL RRRR  R+G  EPN+KC YLF WRNQSRI+PKEI SISKIDG  SEGA VVVVET  A+DEL KWQEL
Subjt:  MDGGLNKIATVFIAAFLLSFLLLVAQILYILSRRRRHLRVG--EPNEKCIYLFCWRNQSRIEPKEIVSISKIDG-DSEGAAVVVVETAAADDELEKWQEL

Query:  CGPSRTLFTINEEDEREGTIECLEY-DPIPKLKSDEDTTPFHTPCASPPYFTPSSSPTRDARDFPADRGCSDENRTTPFSAIQITIH
        CGPSRTLFTI EE+EREG IEC EY +P PKLK+DEDTTPFHTPCASPPY TPSSSP   +RDFPADRGC D+N TTPFSAIQIT H
Subjt:  CGPSRTLFTINEEDEREGTIECLEY-DPIPKLKSDEDTTPFHTPCASPPYFTPSSSPTRDARDFPADRGCSDENRTTPFSAIQITIH

XP_022935266.1 uncharacterized protein LOC111442204 [Cucurbita moschata]

3.9e-45

57.53

Show/hide

Query:  MDGGLNKIATVFIAAFLLSFLLLVAQILYILSRRRRHLRVGEPNEKCIYLFCWRNQSRIEPKEIVSISKIDGDSEGAAVVVVETAAADDELEKWQELCGP
        MDGGLNKI  V IA FLL+FLLL+AQILY+LSRRR      +PNEKC Y FCWRNQ RIEPKEI  ISK   + E AA  VV        +E+WQEL GP
Subjt:  MDGGLNKIATVFIAAFLLSFLLLVAQILYILSRRRRHLRVGEPNEKCIYLFCWRNQSRIEPKEIVSISKIDGDSEGAAVVVVETAAADDELEKWQELCGP

Query:  SRTLFTINEEDEREGTIECLEYDPIPKLKSDEDTTPFHTPCASPPYF---TPSSSPTRDARDFPADRGCSDENRTTPFSAIQITIH
        SRTLFTI EE+E EG                  T  FHTPC SP Y+   +PSSSPTRDA +FP D  C D NRTTPF AI+I+ H
Subjt:  SRTLFTINEEDEREGTIECLEYDPIPKLKSDEDTTPFHTPCASPPYF---TPSSSPTRDARDFPADRGCSDENRTTPFSAIQITIH

XP_022983133.1 uncharacterized protein LOC111481774 [Cucurbita maxima]

3.6e-46

59.78

Show/hide

Query:  MDGGLNKIATVFIAAFLLSFLLLVAQILYILSRRRRHLRVGEPNEKCIYLFCWRNQSRIEPKEIVSISKIDGDSEGAAVVVVETAAADDELEKWQELCGP
        MDGGLNKI  V IA FLL+FLLLVAQILY+LSRRR      EPN+KC Y FCWRNQSRI+PKEI SISK   + E AAVVV          E+WQEL GP
Subjt:  MDGGLNKIATVFIAAFLLSFLLLVAQILYILSRRRRHLRVGEPNEKCIYLFCWRNQSRIEPKEIVSISKIDGDSEGAAVVVVETAAADDELEKWQELCGP

Query:  SRTLFTINEEDEREGTIECLEYDPIPKLKSDEDTTPFHTPCASPP-YFTPSSSPTRDARDFPADRGCSDENRTTPFSAIQITIH
        SRTLFTI EE+E EGT                 T  FHTPC SP  YFTPS SPTR+A +FP D  C D NRTTPF A++I+ H
Subjt:  SRTLFTINEEDEREGTIECLEYDPIPKLKSDEDTTPFHTPCASPP-YFTPSSSPTRDARDFPADRGCSDENRTTPFSAIQITIH

XP_038905411.1 uncharacterized protein LOC120091450 [Benincasa hispida]

9.0e-74

80.87

Show/hide

Query:  MDGGLNKIATVFIAAFLLSFLLLVAQILYILSRRRRHLRVGEPNEKCIYLFCW-RNQSRIEPKEIVSISKIDGDSEGAAVVVVETAAADDELEKWQELCG
        MDGGLNK AT  IA F+L+FLLLVAQILY LSRRR   R GEPNEKC Y+FCW RNQSRIEPKE+VSISK++GD EG AVVVVE AA D+ELEKWQELCG
Subjt:  MDGGLNKIATVFIAAFLLSFLLLVAQILYILSRRRRHLRVGEPNEKCIYLFCW-RNQSRIEPKEIVSISKIDGDSEGAAVVVVETAAADDELEKWQELCG

Query:  PSRTLFTI-NEEDEREGTIECLEYDPIPKLKSDEDTTPFHTPCASPPYFTPSSSPTRDARDFPADRGCSDENRTTPFSAIQIT
        PSRTLFTI  EE+EREG IEC  YDPIPKLK DEDTTPFHTPCASPPYFTPSSSPTRD+ DFPADRGCS++N TTPFS IQIT
Subjt:  PSRTLFTI-NEEDEREGTIECLEYDPIPKLKSDEDTTPFHTPCASPPYFTPSSSPTRDARDFPADRGCSDENRTTPFSAIQIT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LB13 Uncharacterized protein

2.6e-58

71.2

Show/hide

Query:  MDGGLNKIAT---VFIAAFLLSFLLLVAQILYILSRRRR--HLRVGEPNEKCIYLFCWRNQSRIEPKEIVSISKIDGDSEGAAVVVVETAAADDELEKWQ
        MDG LNKIAT   +FI  FLL FL L+AQILYIL RRRR   LR GEPN+K  +LF WRNQSRI+PKEI SISKID DSEGA   VVETA   DELEKWQ
Subjt:  MDGGLNKIAT---VFIAAFLLSFLLLVAQILYILSRRRR--HLRVGEPNEKCIYLFCWRNQSRIEPKEIVSISKIDGDSEGAAVVVVETAAADDELEKWQ

Query:  ELCGPSRTLFTINEEDEREGTIECLEY-DPIPKLKSD--EDTTPFHTPCASPPYFTPSSSPTRDARDFPADRGCSDENRTTPFSAIQITIH
        ELCGPSRTLFTI EE+EREG +EC EY +P  KLK+D  EDTTPFHTP ASPPYFTPSSSPT   RDFP  +GCS++N  TP S IQIT H
Subjt:  ELCGPSRTLFTINEEDEREGTIECLEY-DPIPKLKSD--EDTTPFHTPCASPPYFTPSSSPTRDARDFPADRGCSDENRTTPFSAIQITIH

A0A1S4DUG3 uncharacterized protein LOC103486669

8.8e-67

76.47

Show/hide

Query:  MDGGLNKIATVFIAAFLLSFLLLVAQILYILSRRRRHLRVG--EPNEKCIYLFCWRNQSRIEPKEIVSISKIDG-DSEGAAVVVVETAAADDELEKWQEL
        MDGGLNKIAT  I  FL  F  L+AQILYIL RRRR  R+G  EPN+KC YLF WRNQSRI+PKEI SISKIDG  SEGA VVVVET  A+DEL KWQEL
Subjt:  MDGGLNKIATVFIAAFLLSFLLLVAQILYILSRRRRHLRVG--EPNEKCIYLFCWRNQSRIEPKEIVSISKIDG-DSEGAAVVVVETAAADDELEKWQEL

Query:  CGPSRTLFTINEEDEREGTIECLEY-DPIPKLKSDEDTTPFHTPCASPPYFTPSSSPTRDARDFPADRGCSDENRTTPFSAIQITIH
        CGPSRTLFTI EE+EREG IEC EY +P PKLK+DEDTTPFHTPCASPPY TPSSSP   +RDFPADRGC D+N TTPFSAIQIT H
Subjt:  CGPSRTLFTINEEDEREGTIECLEY-DPIPKLKSDEDTTPFHTPCASPPYFTPSSSPTRDARDFPADRGCSDENRTTPFSAIQITIH

A0A5A7TPT7 Uncharacterized protein

8.8e-67

76.47

Show/hide

Query:  MDGGLNKIATVFIAAFLLSFLLLVAQILYILSRRRRHLRVG--EPNEKCIYLFCWRNQSRIEPKEIVSISKIDG-DSEGAAVVVVETAAADDELEKWQEL
        MDGGLNKIAT  I  FL  F  L+AQILYIL RRRR  R+G  EPN+KC YLF WRNQSRI+PKEI SISKIDG  SEGA VVVVET  A+DEL KWQEL
Subjt:  MDGGLNKIATVFIAAFLLSFLLLVAQILYILSRRRRHLRVG--EPNEKCIYLFCWRNQSRIEPKEIVSISKIDG-DSEGAAVVVVETAAADDELEKWQEL

Query:  CGPSRTLFTINEEDEREGTIECLEY-DPIPKLKSDEDTTPFHTPCASPPYFTPSSSPTRDARDFPADRGCSDENRTTPFSAIQITIH
        CGPSRTLFTI EE+EREG IEC EY +P PKLK+DEDTTPFHTPCASPPY TPSSSP   +RDFPADRGC D+N TTPFSAIQIT H
Subjt:  CGPSRTLFTINEEDEREGTIECLEY-DPIPKLKSDEDTTPFHTPCASPPYFTPSSSPTRDARDFPADRGCSDENRTTPFSAIQITIH

A0A6J1F429 uncharacterized protein LOC111442204

1.9e-45

57.53

Show/hide

Query:  MDGGLNKIATVFIAAFLLSFLLLVAQILYILSRRRRHLRVGEPNEKCIYLFCWRNQSRIEPKEIVSISKIDGDSEGAAVVVVETAAADDELEKWQELCGP
        MDGGLNKI  V IA FLL+FLLL+AQILY+LSRRR      +PNEKC Y FCWRNQ RIEPKEI  ISK   + E AA  VV        +E+WQEL GP
Subjt:  MDGGLNKIATVFIAAFLLSFLLLVAQILYILSRRRRHLRVGEPNEKCIYLFCWRNQSRIEPKEIVSISKIDGDSEGAAVVVVETAAADDELEKWQELCGP

Query:  SRTLFTINEEDEREGTIECLEYDPIPKLKSDEDTTPFHTPCASPPYF---TPSSSPTRDARDFPADRGCSDENRTTPFSAIQITIH
        SRTLFTI EE+E EG                  T  FHTPC SP Y+   +PSSSPTRDA +FP D  C D NRTTPF AI+I+ H
Subjt:  SRTLFTINEEDEREGTIECLEYDPIPKLKSDEDTTPFHTPCASPPYF---TPSSSPTRDARDFPADRGCSDENRTTPFSAIQITIH

A0A6J1J6W6 uncharacterized protein LOC111481774

1.7e-46

59.78

Show/hide

Query:  MDGGLNKIATVFIAAFLLSFLLLVAQILYILSRRRRHLRVGEPNEKCIYLFCWRNQSRIEPKEIVSISKIDGDSEGAAVVVVETAAADDELEKWQELCGP
        MDGGLNKI  V IA FLL+FLLLVAQILY+LSRRR      EPN+KC Y FCWRNQSRI+PKEI SISK   + E AAVVV          E+WQEL GP
Subjt:  MDGGLNKIATVFIAAFLLSFLLLVAQILYILSRRRRHLRVGEPNEKCIYLFCWRNQSRIEPKEIVSISKIDGDSEGAAVVVVETAAADDELEKWQELCGP

Query:  SRTLFTINEEDEREGTIECLEYDPIPKLKSDEDTTPFHTPCASPP-YFTPSSSPTRDARDFPADRGCSDENRTTPFSAIQITIH
        SRTLFTI EE+E EGT                 T  FHTPC SP  YFTPS SPTR+A +FP D  C D NRTTPF A++I+ H
Subjt:  SRTLFTINEEDEREGTIECLEYDPIPKLKSDEDTTPFHTPCASPP-YFTPSSSPTRDARDFPADRGCSDENRTTPFSAIQITIH

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G11640.1 unknown protein

8.8e-11

37.06

Show/hide

Query:  LNKIATVFIAAFLLSFLLLVAQILYILSRRRRHLRVGEPNEKCI-YLFCWR---NQSRIEPKEIVSISKIDGDSEGAAVVVVETAAADDELEKWQELCGP
        L     V +A  L   L+L A++ YI   R   L      E    +L C +   + SRIEP   +   +++ D   AAV   E AAAD    KW+     
Subjt:  LNKIATVFIAAFLLSFLLLVAQILYILSRRRRHLRVGEPNEKCI-YLFCWR---NQSRIEPKEIVSISKIDGDSEGAAVVVVETAAADDELEKWQELCGP

Query:  SRTLFTINEED----EREGTIECLEYD-------PIPKLKSDEDTTPFHTPCASPPYFTPSSSPTRDARD
        SR LFTI EED    + +  +   E D        IP ++   D TPF TPC SPPYFTPS SP RD  D
Subjt:  SRTLFTINEED----EREGTIECLEYD-------PIPKLKSDEDTTPFHTPCASPPYFTPSSSPTRDARD

AT3G52480.1 unknown protein

9.8e-10

29.7

Show/hide

Query:  GLNKIATVFIAAFLLSFLLLVAQILYILSRRRRHLR--------------------VGEPNEKCIY--LFCWRNQSRIEPKEIVSISKIDGDSEGAAVVV
        GL   AT+ +A F    + + AQ  Y+L  +RR  R                       P+++ +Y  LFC  N+          I         AA   
Subjt:  GLNKIATVFIAAFLLSFLLLVAQILYILSRRRRHLR--------------------VGEPNEKCIY--LFCWRNQSRIEPKEIVSISKIDGDSEGAAVVV

Query:  VETAAADDELEKWQELCGPSRTLFTINEEDEREGTIECLEYDPIPKL------KSDE---------------------DTTPFHTPCASPPYFTPSSSPT
        V   A+   +     LCGPS TLFTI E+   E      E DP   +      K DE                      TTPF TPCASPP++TPS SP 
Subjt:  VETAAADDELEKWQELCGPSRTLFTINEEDEREGTIECLEYDPIPKL------KSDE---------------------DTTPFHTPCASPPYFTPSSSPT

Query:  RD
        RD
Subjt:  RD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGACGGCGGCCTGAACAAGATCGCCACCGTATTCATCGCTGCCTTTTTACTCTCTTTCCTACTTCTCGTCGCTCAGATTCTTTACATTCTCTCTCGCCGCCGGCGCCA
CCTACGCGTCGGCGAACCCAATGAAAAATGTATCTACCTTTTCTGCTGGAGGAACCAATCGCGGATCGAACCGAAAGAAATCGTGTCCATTTCTAAAATTGACGGTGATT
CCGAAGGGGCGGCGGTGGTGGTGGTGGAGACGGCGGCGGCGGACGACGAGTTGGAGAAATGGCAAGAACTGTGTGGACCGTCAAGAACACTTTTCACTATCAACGAAGAA
GATGAAAGAGAAGGAACAATCGAATGTCTGGAGTACGATCCTATTCCTAAACTCAAATCGGATGAAGATACAACGCCGTTTCATACGCCCTGTGCTTCTCCTCCCTACTT
CACCCCCTCCTCTTCGCCTACACGTGACGCCCGCGATTTTCCGGCGGATAGAGGTTGTTCCGACGAAAATCGGACGACGCCGTTTTCGGCTATTCAAATTACCATCCACT
GA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDGGLNKIATVFIAAFLLSFLLLVAQILYILSRRRRHLRVGEPNEKCIYLFCWRNQSRIEPKEIVSISKIDGDSEGAAVVVVETAAADDELEKWQELCGPSRTLFTINEE
DEREGTIECLEYDPIPKLKSDEDTTPFHTPCASPPYFTPSSSPTRDARDFPADRGCSDENRTTPFSAIQITIH

HG10020064 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome